Wall clock time and date at job start Tue Mar 31 2020 17:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38601 * 120.32495 * 2 1 4 4 N 1.31499 * 120.90253 * 179.97438 * 3 2 1 5 5 C 1.32743 * 121.64465 * 0.02928 * 4 3 2 6 6 C 1.48165 * 119.72800 * 179.97438 * 5 4 3 7 7 O 1.21513 * 120.00214 * 191.91711 * 6 5 4 8 8 N 1.34778 * 119.99888 * 11.91178 * 6 5 4 9 9 C 1.47163 * 120.97835 * 1.56129 * 8 6 5 10 10 C 1.53291 * 108.38541 * 129.44145 * 9 8 6 11 11 O 1.42965 * 109.22300 * 52.29708 * 10 9 8 12 12 C 1.42963 * 114.17016 * 297.42034 * 11 10 9 13 13 H 1.09006 * 109.51247 * 302.66122 * 12 11 10 14 14 C 1.52998 * 109.51325 * 182.55417 * 12 11 10 15 15 H 1.08999 * 109.46899 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.47099 * 60.00462 * 14 12 11 17 17 N 1.46487 * 109.47242 * 299.99885 * 14 12 11 18 18 C 1.36936 * 120.00270 * 204.99920 * 17 14 12 19 19 H 1.08002 * 120.00011 * 0.02562 * 18 17 14 20 20 C 1.38815 * 120.00525 * 180.02562 * 18 17 14 21 21 N 1.31622 * 119.99609 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00294 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47308 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46701 * 120.00212 * 22 20 18 25 25 H 1.48501 * 109.47277 * 240.00296 * 22 20 18 26 26 C 1.47151 * 120.98595 * 181.53229 * 8 6 5 27 27 C 1.39277 * 120.55174 * 0.24713 * 5 4 3 28 28 C 1.38592 * 120.32550 * 179.97438 * 2 1 3 29 29 C 1.50698 * 120.75337 * 0.02562 * 28 2 1 30 30 H 1.09006 * 109.46794 * 90.00073 * 1 2 3 31 31 H 1.08997 * 109.46893 * 209.99463 * 1 2 3 32 32 H 1.08996 * 109.47442 * 330.00160 * 1 2 3 33 33 H 1.07996 * 119.55146 * 359.97438 * 3 2 1 34 34 H 1.08999 * 109.67549 * 249.15784 * 9 8 6 35 35 H 1.08993 * 109.68163 * 9.71183 * 9 8 6 36 36 H 1.09002 * 109.51236 * 292.37796 * 10 9 8 37 37 H 1.08996 * 109.51401 * 172.22011 * 10 9 8 38 38 H 1.08997 * 109.47377 * 180.02562 * 16 14 12 39 39 H 1.08999 * 109.46912 * 299.99583 * 16 14 12 40 40 H 1.09004 * 109.47433 * 59.99604 * 16 14 12 41 41 H 0.97002 * 120.00238 * 25.00238 * 17 14 12 42 42 H 0.97000 * 120.00027 * 180.02562 * 21 20 18 43 43 H 1.08996 * 109.67960 * 110.83757 * 26 8 6 44 44 H 1.08994 * 109.67808 * 350.28344 * 26 8 6 45 45 H 1.08005 * 120.46885 * 179.72334 * 27 5 4 46 46 H 1.09003 * 109.46684 * 90.00750 * 29 28 2 47 47 H 1.09000 * 109.46718 * 209.99806 * 29 28 2 48 48 H 1.08997 * 109.47107 * 330.00210 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1964 0.0000 4 7 3.5217 1.2096 0.0005 5 6 4.2295 0.0866 0.0005 6 6 5.7097 0.1511 0.0005 7 8 6.3616 -0.8511 -0.2169 8 7 6.3333 1.3214 0.2414 9 6 5.5659 2.5410 0.5407 10 6 6.1390 3.1724 1.8145 11 8 7.5520 3.3317 1.6664 12 6 8.2655 2.1036 1.5035 13 1 8.0672 1.4517 2.3544 14 6 9.7658 2.3916 1.4190 15 1 10.3091 1.4549 1.2944 16 6 10.2259 3.0814 2.7049 17 7 10.0315 3.2656 0.2739 18 6 11.2653 3.2599 -0.3201 19 1 12.0424 2.6106 0.0554 20 6 11.5173 4.0885 -1.4049 21 7 10.5704 4.8802 -1.8622 22 14 13.2006 4.0812 -2.2147 23 1 14.0815 3.1106 -1.5168 24 1 13.0624 3.6876 -3.6399 25 1 13.7959 5.4391 -2.1316 26 6 7.8014 1.4174 0.2137 27 6 3.5923 -1.1518 -0.0053 28 6 2.2067 -1.1963 0.0005 29 6 1.4779 -2.5153 0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5137 32 1 -0.3634 0.8899 0.5138 33 1 1.6648 2.1305 -0.0004 34 1 5.6541 3.2428 -0.2886 35 1 4.5177 2.2861 0.6967 36 1 5.9330 2.5244 2.6665 37 1 5.6779 4.1466 1.9772 38 1 11.2946 3.2870 2.6445 39 1 9.6826 4.0181 2.8290 40 1 10.0282 2.4310 3.5570 41 1 9.3335 3.8485 -0.0636 42 1 10.7463 5.4589 -2.6205 43 1 8.1145 2.0062 -0.6484 44 1 8.2334 0.4186 0.1533 45 1 4.1695 -2.0647 -0.0098 46 1 1.3028 -2.8336 -1.0272 47 1 2.0811 -3.2636 0.5148 48 1 0.5231 -2.4028 0.5139 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734181002.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:44 Heat of formation + Delta-G solvation = -34.852349 kcal Electronic energy + Delta-G solvation = -29254.496909 eV Core-core repulsion = 25309.676437 eV Total energy + Delta-G solvation = -3944.820472 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.13223 -40.83748 -39.49913 -37.14872 -36.15122 -35.34640 -34.17127 -33.45756 -31.68401 -30.15629 -29.79876 -28.93349 -27.90671 -25.93531 -25.02253 -24.37761 -23.80428 -22.73135 -21.24836 -20.62601 -19.36299 -18.61835 -18.03164 -17.45529 -17.04703 -16.91033 -16.55833 -16.31344 -15.99051 -15.86792 -15.70668 -15.39796 -15.12438 -14.95550 -14.65319 -14.35601 -14.15102 -13.93919 -13.90510 -13.69492 -13.50786 -13.46503 -13.12471 -12.92375 -12.79866 -12.55177 -12.51769 -12.47923 -12.44600 -12.13392 -11.83024 -11.69909 -11.59753 -11.43659 -11.12056 -10.96371 -10.55734 -10.02249 -9.97469 -9.58667 -8.95946 -7.90032 -5.17768 -0.46083 0.13173 1.46735 1.47616 1.54214 1.57426 1.72024 2.57228 2.67020 2.78468 2.96793 3.43517 3.49678 3.69455 3.72591 3.84076 3.86114 3.91810 3.97738 4.04685 4.11098 4.22647 4.29875 4.43817 4.52498 4.57079 4.63034 4.64386 4.70300 4.72806 4.80170 4.85128 4.89229 4.95258 4.99419 5.05701 5.08102 5.13843 5.17975 5.22682 5.36801 5.44524 5.53356 5.59679 5.75438 6.19815 6.26168 6.32622 6.59081 6.92702 7.37996 8.13842 8.39497 9.33562 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019443 B = 0.002671 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.749051 B =10480.734326 C =10730.076985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.106 4.106 3 C 0.093 3.907 4 N -0.467 5.467 5 C 0.054 3.946 6 C 0.559 3.441 7 O -0.576 6.576 8 N -0.591 5.591 9 C 0.035 3.965 10 C 0.044 3.956 11 O -0.385 6.385 12 C 0.094 3.906 13 H 0.075 0.925 14 C 0.173 3.827 15 H 0.060 0.940 16 C -0.147 4.147 17 N -0.727 5.727 18 C -0.233 4.233 19 H 0.077 0.923 20 C -0.078 4.078 21 N -0.968 5.968 22 Si 0.970 3.030 23 H -0.266 1.266 24 H -0.297 1.297 25 H -0.294 1.294 26 C 0.091 3.909 27 C -0.116 4.116 28 C -0.051 4.051 29 C -0.118 4.118 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.197 0.803 34 H 0.056 0.944 35 H 0.179 0.821 36 H 0.060 0.940 37 H 0.125 0.875 38 H 0.040 0.960 39 H 0.044 0.956 40 H 0.067 0.933 41 H 0.377 0.623 42 H 0.248 0.752 43 H 0.059 0.941 44 H 0.083 0.917 45 H 0.140 0.860 46 H 0.089 0.911 47 H 0.075 0.925 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.559 -11.901 8.772 31.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.108 4.108 3 C -0.066 4.066 4 N -0.179 5.179 5 C -0.081 4.081 6 C 0.348 3.652 7 O -0.457 6.457 8 N -0.321 5.321 9 C -0.087 4.087 10 C -0.033 4.033 11 O -0.304 6.304 12 C 0.035 3.965 13 H 0.093 0.907 14 C 0.064 3.936 15 H 0.078 0.922 16 C -0.207 4.207 17 N -0.367 5.367 18 C -0.365 4.365 19 H 0.095 0.905 20 C -0.270 4.270 21 N -0.620 5.620 22 Si 0.800 3.200 23 H -0.190 1.190 24 H -0.225 1.225 25 H -0.222 1.222 26 C -0.032 4.032 27 C -0.137 4.137 28 C -0.058 4.058 29 C -0.174 4.174 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.214 0.786 34 H 0.075 0.925 35 H 0.195 0.805 36 H 0.078 0.922 37 H 0.143 0.857 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.086 0.914 41 H 0.209 0.791 42 H 0.057 0.943 43 H 0.077 0.923 44 H 0.102 0.898 45 H 0.158 0.842 46 H 0.108 0.892 47 H 0.094 0.906 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -26.447 -11.536 8.636 30.118 hybrid contribution 0.924 -0.329 -1.060 1.444 sum -25.524 -11.865 7.575 29.148 Atomic orbital electron populations 1.20962 0.86839 1.05158 1.04133 1.21438 0.99765 0.92552 0.97016 1.23511 0.88534 0.99903 0.94627 1.67178 1.09660 1.28212 1.12833 1.20704 0.92184 0.91155 1.04033 1.18505 0.87483 0.82559 0.76638 1.90726 1.67150 1.35671 1.52109 1.48145 1.06814 1.09829 1.67317 1.24012 1.02038 0.84871 0.97749 1.23250 0.80915 1.02936 0.96202 1.88039 1.19458 1.29577 1.93310 1.22606 0.92820 0.86067 0.95011 0.90736 1.20506 0.90566 0.93939 0.88558 0.92177 1.22160 1.00380 1.00790 0.97380 1.42509 1.12286 1.47840 1.34102 1.19678 0.90741 1.17477 1.08637 0.90548 1.25522 1.01199 0.99920 1.00372 1.69856 1.33954 1.29755 1.28386 0.85115 0.80073 0.77063 0.77792 1.18994 1.22465 1.22174 1.22161 0.79636 1.01736 0.99674 1.22035 0.95651 0.97833 0.98164 1.20590 0.91995 0.97971 0.95266 1.20993 1.01060 0.91178 1.04180 0.89238 0.89295 0.89120 0.78603 0.92536 0.80534 0.92195 0.85712 0.94050 0.93653 0.91379 0.79091 0.94303 0.92277 0.89810 0.84247 0.89217 0.90635 0.88126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.37 9.65 71.23 0.69 0.32 16 2 C -0.11 -1.19 5.91 -19.69 -0.12 -1.31 16 3 C 0.09 1.33 10.86 84.83 0.92 2.25 16 4 N -0.47 -10.50 6.09 -184.91 -1.13 -11.62 16 5 C 0.05 1.47 6.60 41.90 0.28 1.74 16 6 C 0.56 19.73 7.68 86.88 0.67 20.39 16 7 O -0.58 -23.64 15.85 -3.75 -0.06 -23.70 16 8 N -0.59 -20.86 3.02 -820.40 -2.48 -23.33 16 9 C 0.03 1.03 6.17 86.35 0.53 1.56 16 10 C 0.04 1.22 6.99 72.08 0.50 1.72 16 11 O -0.39 -14.30 9.22 -148.98 -1.37 -15.67 16 12 C 0.09 3.51 2.53 30.69 0.08 3.59 16 13 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 14 C 0.17 7.31 2.74 44.99 0.12 7.44 16 15 H 0.06 2.51 8.08 -2.39 -0.02 2.49 16 16 C -0.15 -5.59 9.35 71.98 0.67 -4.92 16 17 N -0.73 -38.39 4.29 -322.96 -1.38 -39.78 16 18 C -0.23 -13.40 9.93 84.03 0.83 -12.56 16 19 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 20 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 21 N -0.97 -61.71 13.06 21.65 0.28 -61.43 16 22 Si 0.97 48.12 29.55 68.60 2.03 50.15 16 23 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 24 H -0.30 -14.83 7.11 99.48 0.71 -14.12 16 25 H -0.29 -14.57 7.11 99.48 0.71 -13.86 16 26 C 0.09 3.67 5.87 86.35 0.51 4.18 16 27 C -0.12 -2.55 9.33 22.61 0.21 -2.34 16 28 C -0.05 -0.72 5.91 -19.69 -0.12 -0.84 16 29 C -0.12 -0.87 9.67 71.24 0.69 -0.18 16 30 H 0.09 0.19 8.14 -2.38 -0.02 0.17 16 31 H 0.09 0.09 6.06 -2.39 -0.01 0.07 16 32 H 0.09 0.06 8.09 -2.39 -0.02 0.04 16 33 H 0.20 1.37 8.06 -2.91 -0.02 1.35 16 34 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.18 4.40 3.92 -74.28 -0.29 4.11 16 36 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.13 2.81 8.14 -2.39 -0.02 2.79 16 38 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.04 1.81 7.68 -2.39 -0.02 1.79 16 40 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.38 21.84 7.20 -92.71 -0.67 21.18 16 42 H 0.25 15.33 8.31 -92.71 -0.77 14.56 16 43 H 0.06 2.84 7.26 -2.39 -0.02 2.82 16 44 H 0.08 3.49 7.07 -2.39 -0.02 3.48 16 45 H 0.14 3.18 7.69 -2.91 -0.02 3.16 16 46 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 47 H 0.07 0.57 8.10 -2.39 -0.02 0.55 16 48 H 0.10 0.28 6.07 -2.39 -0.01 0.26 16 Total: -1.00 -78.04 383.65 2.85 -75.18 By element: Atomic # 1 Polarization: 33.32 SS G_CDS: 0.03 Total: 33.35 kcal Atomic # 6 Polarization: 9.92 SS G_CDS: 6.94 Total: 16.86 kcal Atomic # 7 Polarization: -131.46 SS G_CDS: -4.71 Total: -136.17 kcal Atomic # 8 Polarization: -37.94 SS G_CDS: -1.43 Total: -39.38 kcal Atomic # 14 Polarization: 48.12 SS G_CDS: 2.03 Total: 50.15 kcal Total: -78.04 2.85 -75.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734181002.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.331 kcal (2) G-P(sol) polarization free energy of solvation -78.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds