Wall clock time and date at job start Tue Mar 31 2020 18:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40199 * 120.36712 * 2 1 4 4 C 1.35348 * 119.95222 * 179.77292 * 3 2 1 5 5 N 1.35763 * 120.69553 * 0.52972 * 4 3 2 6 6 C 1.46500 * 119.62253 * 179.71959 * 5 4 3 7 7 C 1.50699 * 109.47474 * 269.72777 * 6 5 4 8 8 O 1.21286 * 119.99302 * 0.02562 * 7 6 5 9 9 N 1.34770 * 120.00187 * 179.97438 * 7 6 5 10 10 C 1.46505 * 120.00002 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47161 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.70059 * 298.96669 * 11 10 9 13 13 C 1.52759 * 109.50626 * 178.84943 * 11 10 9 14 14 C 1.53039 * 109.38055 * 185.70800 * 13 11 10 15 15 C 1.53039 * 109.54291 * 61.23893 * 14 13 11 16 16 C 1.53193 * 109.31205 * 298.64127 * 15 14 13 17 17 N 1.46924 * 109.58371 * 59.32445 * 11 10 9 18 18 C 1.36941 * 120.63613 * 353.41673 * 17 11 10 19 19 H 1.07997 * 119.99308 * 30.60534 * 18 17 11 20 20 C 1.38806 * 120.00343 * 210.60959 * 18 17 11 21 21 N 1.31627 * 119.99933 * 22.31919 * 20 18 17 22 22 Si 1.86799 * 120.00086 * 202.32162 * 20 18 17 23 23 H 1.48501 * 109.47156 * 179.97438 * 22 20 18 24 24 H 1.48501 * 109.46897 * 299.99739 * 22 20 18 25 25 H 1.48495 * 109.47155 * 59.99714 * 22 20 18 26 26 C 1.34662 * 120.75403 * 359.44349 * 5 4 3 27 27 O 1.22061 * 119.98692 * 180.27685 * 26 5 4 28 28 C 1.36399 * 120.37126 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.47274 * 269.97517 * 1 2 3 30 30 H 1.08998 * 109.47181 * 29.97774 * 1 2 3 31 31 H 1.08997 * 109.46968 * 149.97640 * 1 2 3 32 32 H 1.08008 * 120.02275 * 0.02641 * 3 2 1 33 33 H 1.07992 * 119.65261 * 180.25057 * 4 3 2 34 34 H 1.09009 * 109.47039 * 149.72678 * 6 5 4 35 35 H 1.09001 * 109.47400 * 29.73052 * 6 5 4 36 36 H 0.97002 * 120.00221 * 359.97438 * 9 7 6 37 37 H 1.08996 * 109.46932 * 60.00023 * 10 9 7 38 38 H 1.09000 * 109.46980 * 299.99990 * 10 9 7 39 39 H 1.08996 * 109.56993 * 65.67431 * 13 11 10 40 40 H 1.09001 * 109.38759 * 305.63074 * 13 11 10 41 41 H 1.09002 * 109.46174 * 301.21783 * 14 13 11 42 42 H 1.08997 * 109.45116 * 181.25658 * 14 13 11 43 43 H 1.08994 * 109.50500 * 178.68242 * 15 14 13 44 44 H 1.09004 * 109.49421 * 58.58741 * 15 14 13 45 45 H 1.09006 * 109.58170 * 294.84115 * 16 15 14 46 46 H 1.09004 * 109.70357 * 174.49236 * 16 15 14 47 47 H 0.96994 * 119.99998 * 5.29587 * 21 20 18 48 48 H 1.07997 * 120.34232 * 359.94977 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2157 1.2096 0.0000 4 6 3.5692 1.1998 0.0046 5 7 4.2538 0.0275 -0.0015 6 6 5.7187 0.0443 -0.0025 7 6 6.2201 0.0502 -1.4236 8 8 5.4313 0.0416 -2.3449 9 7 7.5448 0.0659 -1.6707 10 6 8.0322 0.0722 -3.0523 11 6 9.5622 0.0897 -3.0533 12 1 9.9196 0.9914 -2.5561 13 6 10.0716 0.0672 -4.4933 14 6 11.5968 -0.0589 -4.4905 15 6 12.0008 -1.3703 -3.8129 16 6 11.5137 -1.3611 -2.3605 17 7 10.0687 -1.0955 -2.3480 18 6 9.2098 -1.9397 -1.6960 19 1 8.2009 -2.0691 -2.0588 20 6 9.6360 -2.6288 -0.5690 21 7 10.6566 -2.1796 0.1303 22 14 8.7610 -4.1938 -0.0448 23 1 9.4045 -4.7342 1.1796 24 1 7.3344 -3.8926 0.2370 25 1 8.8489 -5.1988 -1.1344 26 6 3.6017 -1.1507 -0.0010 27 8 4.2313 -2.1965 -0.0014 28 6 2.1966 -1.1768 -0.0005 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6821 2.1487 0.0004 33 1 4.1102 2.1344 0.0087 34 1 6.0926 -0.8415 0.5112 35 1 6.0721 0.9384 0.5112 36 1 8.1757 0.0739 -0.9339 37 1 7.6581 0.9579 -3.5655 38 1 7.6791 -0.8219 -3.5661 39 1 9.7838 0.9901 -4.9967 40 1 9.6371 -0.7839 -5.0176 41 1 12.0295 0.7799 -3.9453 42 1 11.9633 -0.0525 -5.5170 43 1 13.0859 -1.4705 -3.8321 44 1 11.5481 -2.2082 -4.3432 45 1 12.0336 -0.5801 -1.8057 46 1 11.7113 -2.3294 -1.9005 47 1 11.0622 -1.3280 -0.0958 48 1 1.6683 -2.1187 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752822212.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:55 Heat of formation + Delta-G solvation = -18.981767 kcal Electronic energy + Delta-G solvation = -29754.733940 eV Core-core repulsion = 25810.601667 eV Total energy + Delta-G solvation = -3944.132272 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.33459 -39.18818 -37.88548 -36.87622 -35.21236 -34.25315 -33.37349 -31.22532 -30.29468 -29.76446 -29.33634 -27.23431 -25.65491 -24.46535 -23.64620 -22.10982 -21.68183 -20.94104 -20.07497 -19.16292 -17.73428 -17.46370 -17.22065 -16.66769 -15.95293 -15.60247 -15.27535 -14.93216 -14.43221 -14.23082 -14.14785 -13.98951 -13.70280 -13.57378 -13.48148 -13.31100 -13.09120 -12.82771 -12.51306 -12.32276 -12.28750 -12.01050 -11.68967 -11.67323 -11.54301 -11.41229 -11.12671 -10.66083 -10.44990 -10.26965 -10.08904 -10.02018 -9.99017 -9.77572 -9.75255 -9.36474 -9.13643 -8.54836 -8.27707 -7.86872 -6.92174 -6.08147 -3.33157 0.87876 1.96543 2.61912 2.99807 3.56392 3.60669 3.62271 3.75439 3.92653 4.48424 4.55141 4.61060 4.79555 4.96417 5.03531 5.15836 5.18570 5.23202 5.31586 5.37103 5.37685 5.47580 5.51217 5.55814 5.59177 5.68331 5.81315 5.90265 5.95563 6.00337 6.09814 6.16853 6.21718 6.27098 6.36347 6.45401 6.50317 6.56249 6.56716 6.66194 6.80749 7.02388 7.07537 7.17247 7.18906 8.03231 8.07587 8.24331 8.53856 8.69602 9.02542 9.77089 10.22006 11.16809 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015278 B = 0.003591 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.237958 B = 7794.990412 C = 9063.612653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.010 3.990 3 C -0.238 4.238 4 C 0.150 3.850 5 N -0.478 5.478 6 C 0.069 3.931 7 C 0.497 3.503 8 O -0.553 6.553 9 N -0.684 5.684 10 C 0.139 3.861 11 C 0.163 3.837 12 H 0.030 0.970 13 C -0.128 4.128 14 C -0.107 4.107 15 C -0.139 4.139 16 C 0.152 3.848 17 N -0.595 5.595 18 C -0.350 4.350 19 H 0.062 0.938 20 C -0.013 4.013 21 N -0.915 5.915 22 Si 1.047 2.953 23 H -0.286 1.286 24 H -0.282 1.282 25 H -0.294 1.294 26 C 0.518 3.482 27 O -0.540 6.540 28 C -0.247 4.247 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.142 0.858 33 H 0.158 0.842 34 H 0.133 0.867 35 H 0.117 0.883 36 H 0.415 0.585 37 H 0.055 0.945 38 H 0.066 0.934 39 H 0.052 0.948 40 H 0.061 0.939 41 H 0.053 0.947 42 H 0.047 0.953 43 H 0.048 0.952 44 H 0.057 0.943 45 H 0.017 0.983 46 H 0.077 0.923 47 H 0.269 0.731 48 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.373 11.232 -0.302 15.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.007 3.993 3 C -0.262 4.262 4 C 0.022 3.978 5 N -0.188 5.188 6 C -0.057 4.057 7 C 0.281 3.719 8 O -0.433 6.433 9 N -0.335 5.335 10 C 0.015 3.985 11 C 0.056 3.944 12 H 0.047 0.953 13 C -0.168 4.168 14 C -0.145 4.145 15 C -0.178 4.178 16 C 0.026 3.974 17 N -0.321 5.321 18 C -0.479 4.479 19 H 0.080 0.920 20 C -0.216 4.216 21 N -0.555 5.555 22 Si 0.876 3.124 23 H -0.212 1.212 24 H -0.208 1.208 25 H -0.221 1.221 26 C 0.320 3.680 27 O -0.421 6.421 28 C -0.268 4.268 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.160 0.840 33 H 0.176 0.824 34 H 0.151 0.849 35 H 0.135 0.865 36 H 0.253 0.747 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.071 0.929 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.075 0.925 45 H 0.035 0.965 46 H 0.095 0.905 47 H 0.080 0.920 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -11.460 9.254 0.167 14.731 hybrid contribution 0.387 1.231 -0.959 1.608 sum -11.072 10.485 -0.792 15.269 Atomic orbital electron populations 1.20893 0.90612 1.03351 1.02824 1.20142 0.96527 0.92726 0.89919 1.20426 0.92321 0.98699 1.14735 1.21864 0.93546 0.89605 0.92739 1.45084 1.07527 1.07150 1.59063 1.21840 0.79019 1.07428 0.97372 1.20439 0.83396 0.77537 0.90543 1.90682 1.55587 1.51274 1.45729 1.45892 1.05857 1.71659 1.10091 1.21253 0.93979 1.00696 0.82594 1.20613 0.90890 0.90845 0.92008 0.95294 1.21869 0.96176 1.00757 0.98008 1.21354 0.95707 0.98216 0.99182 1.22076 0.98924 0.97019 0.99806 1.20955 0.84203 1.00189 0.92026 1.44150 1.02556 1.24326 1.61041 1.20012 0.96987 1.22874 1.08018 0.91999 1.25736 0.99666 1.03891 0.92322 1.70824 1.25210 1.21616 1.37804 0.83751 0.76060 0.76449 0.76105 1.21169 1.20777 1.22112 1.17115 0.89309 0.82650 0.78969 1.91031 1.68986 1.30127 1.51965 1.21909 0.92351 0.99426 1.13158 0.90331 0.90954 0.90972 0.84029 0.82415 0.84925 0.86519 0.74727 0.92692 0.91570 0.92888 0.91997 0.92865 0.93405 0.93293 0.92470 0.96529 0.90464 0.92010 0.83760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.90 10.03 36.00 0.36 -0.54 16 2 C 0.01 0.12 5.89 -104.55 -0.62 -0.50 16 3 C -0.24 -2.39 9.71 -39.88 -0.39 -2.78 16 4 C 0.15 1.69 10.28 -16.84 -0.17 1.51 16 5 N -0.48 -7.35 2.07 -121.06 -0.25 -7.60 16 6 C 0.07 1.06 5.81 -5.19 -0.03 1.03 16 7 C 0.50 9.34 7.90 -10.99 -0.09 9.25 16 8 O -0.55 -12.12 16.43 5.55 0.09 -12.03 16 9 N -0.68 -12.85 3.79 -60.29 -0.23 -13.07 16 10 C 0.14 2.63 4.43 -4.04 -0.02 2.61 16 11 C 0.16 3.08 3.01 -67.82 -0.20 2.88 16 12 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 13 C -0.13 -2.13 5.34 -26.83 -0.14 -2.27 16 14 C -0.11 -1.70 5.88 -26.69 -0.16 -1.86 16 15 C -0.14 -2.53 6.08 -26.61 -0.16 -2.69 16 16 C 0.15 3.32 4.68 -3.71 -0.02 3.30 16 17 N -0.60 -13.39 2.81 -165.03 -0.46 -13.86 16 18 C -0.35 -8.87 6.84 -15.06 -0.10 -8.97 16 19 H 0.06 1.68 5.88 -52.49 -0.31 1.37 16 20 C -0.01 -0.35 4.74 -17.43 -0.08 -0.43 16 21 N -0.91 -25.41 12.50 55.49 0.69 -24.72 16 22 Si 1.05 25.75 29.97 -169.99 -5.10 20.66 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 C 0.52 9.49 7.40 -15.45 -0.11 9.37 16 27 O -0.54 -12.46 16.64 4.86 0.08 -12.38 16 28 C -0.25 -3.61 9.65 -39.38 -0.38 -3.99 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.44 8.10 -51.93 -0.42 0.02 16 31 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 32 H 0.14 0.96 8.06 -52.48 -0.42 0.54 16 33 H 0.16 1.19 8.03 -52.49 -0.42 0.77 16 34 H 0.13 2.32 7.39 -51.92 -0.38 1.94 16 35 H 0.12 1.23 8.01 -51.93 -0.42 0.81 16 36 H 0.41 7.96 7.32 -40.82 -0.30 7.66 16 37 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.07 1.44 7.47 -51.93 -0.39 1.05 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 45 H 0.02 0.37 7.81 -51.93 -0.41 -0.04 16 46 H 0.08 1.93 6.45 -51.93 -0.33 1.60 16 47 H 0.27 7.39 6.58 -40.82 -0.27 7.12 16 48 H 0.14 1.95 8.06 -52.49 -0.42 1.53 16 LS Contribution 383.73 15.07 5.78 5.78 Total: -1.00 -34.36 383.73 -9.22 -43.57 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -7.51 Total: 7.70 kcal Atomic # 6 Polarization: 8.25 SS G_CDS: -2.31 Total: 5.93 kcal Atomic # 7 Polarization: -59.00 SS G_CDS: -0.25 Total: -59.25 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: 0.17 Total: -24.40 kcal Atomic # 14 Polarization: 25.75 SS G_CDS: -5.10 Total: 20.66 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.36 -9.22 -43.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752822212.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.591 kcal (2) G-P(sol) polarization free energy of solvation -34.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds