Wall clock time and date at job start Tue Mar 31 2020 18:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40199 * 120.36712 * 2 1 4 4 C 1.35348 * 119.95222 * 179.77292 * 3 2 1 5 5 N 1.35763 * 120.69553 * 0.52972 * 4 3 2 6 6 C 1.46500 * 119.62253 * 179.71959 * 5 4 3 7 7 C 1.50699 * 109.47474 * 269.72777 * 6 5 4 8 8 O 1.21286 * 119.99302 * 0.02562 * 7 6 5 9 9 N 1.34770 * 120.00187 * 179.97438 * 7 6 5 10 10 C 1.46505 * 120.00002 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47161 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.70059 * 298.96669 * 11 10 9 13 13 C 1.52759 * 109.50626 * 178.84943 * 11 10 9 14 14 C 1.53039 * 109.38055 * 185.70800 * 13 11 10 15 15 C 1.53039 * 109.54291 * 61.23893 * 14 13 11 16 16 C 1.53193 * 109.31205 * 298.64127 * 15 14 13 17 17 N 1.46924 * 109.58371 * 59.32445 * 11 10 9 18 18 C 1.36941 * 120.63613 * 353.41673 * 17 11 10 19 19 H 1.07997 * 119.99308 * 30.60534 * 18 17 11 20 20 C 1.38806 * 120.00343 * 210.60959 * 18 17 11 21 21 N 1.31627 * 119.99933 * 22.31919 * 20 18 17 22 22 Si 1.86799 * 120.00086 * 202.32162 * 20 18 17 23 23 H 1.48501 * 109.47156 * 179.97438 * 22 20 18 24 24 H 1.48501 * 109.46897 * 299.99739 * 22 20 18 25 25 H 1.48495 * 109.47155 * 59.99714 * 22 20 18 26 26 C 1.34662 * 120.75403 * 359.44349 * 5 4 3 27 27 O 1.22061 * 119.98692 * 180.27685 * 26 5 4 28 28 C 1.36399 * 120.37126 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.47274 * 269.97517 * 1 2 3 30 30 H 1.08998 * 109.47181 * 29.97774 * 1 2 3 31 31 H 1.08997 * 109.46968 * 149.97640 * 1 2 3 32 32 H 1.08008 * 120.02275 * 0.02641 * 3 2 1 33 33 H 1.07992 * 119.65261 * 180.25057 * 4 3 2 34 34 H 1.09009 * 109.47039 * 149.72678 * 6 5 4 35 35 H 1.09001 * 109.47400 * 29.73052 * 6 5 4 36 36 H 0.97002 * 120.00221 * 359.97438 * 9 7 6 37 37 H 1.08996 * 109.46932 * 60.00023 * 10 9 7 38 38 H 1.09000 * 109.46980 * 299.99990 * 10 9 7 39 39 H 1.08996 * 109.56993 * 65.67431 * 13 11 10 40 40 H 1.09001 * 109.38759 * 305.63074 * 13 11 10 41 41 H 1.09002 * 109.46174 * 301.21783 * 14 13 11 42 42 H 1.08997 * 109.45116 * 181.25658 * 14 13 11 43 43 H 1.08994 * 109.50500 * 178.68242 * 15 14 13 44 44 H 1.09004 * 109.49421 * 58.58741 * 15 14 13 45 45 H 1.09006 * 109.58170 * 294.84115 * 16 15 14 46 46 H 1.09004 * 109.70357 * 174.49236 * 16 15 14 47 47 H 0.96994 * 119.99998 * 5.29587 * 21 20 18 48 48 H 1.07997 * 120.34232 * 359.94977 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2157 1.2096 0.0000 4 6 3.5692 1.1998 0.0046 5 7 4.2538 0.0275 -0.0015 6 6 5.7187 0.0443 -0.0025 7 6 6.2201 0.0502 -1.4236 8 8 5.4313 0.0416 -2.3449 9 7 7.5448 0.0659 -1.6707 10 6 8.0322 0.0722 -3.0523 11 6 9.5622 0.0897 -3.0533 12 1 9.9196 0.9914 -2.5561 13 6 10.0716 0.0672 -4.4933 14 6 11.5968 -0.0589 -4.4905 15 6 12.0008 -1.3703 -3.8129 16 6 11.5137 -1.3611 -2.3605 17 7 10.0687 -1.0955 -2.3480 18 6 9.2098 -1.9397 -1.6960 19 1 8.2009 -2.0691 -2.0588 20 6 9.6360 -2.6288 -0.5690 21 7 10.6566 -2.1796 0.1303 22 14 8.7610 -4.1938 -0.0448 23 1 9.4045 -4.7342 1.1796 24 1 7.3344 -3.8926 0.2370 25 1 8.8489 -5.1988 -1.1344 26 6 3.6017 -1.1507 -0.0010 27 8 4.2313 -2.1965 -0.0014 28 6 2.1966 -1.1768 -0.0005 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6821 2.1487 0.0004 33 1 4.1102 2.1344 0.0087 34 1 6.0926 -0.8415 0.5112 35 1 6.0721 0.9384 0.5112 36 1 8.1757 0.0739 -0.9339 37 1 7.6581 0.9579 -3.5655 38 1 7.6791 -0.8219 -3.5661 39 1 9.7838 0.9901 -4.9967 40 1 9.6371 -0.7839 -5.0176 41 1 12.0295 0.7799 -3.9453 42 1 11.9633 -0.0525 -5.5170 43 1 13.0859 -1.4705 -3.8321 44 1 11.5481 -2.2082 -4.3432 45 1 12.0336 -0.5801 -1.8057 46 1 11.7113 -2.3294 -1.9005 47 1 11.0622 -1.3280 -0.0958 48 1 1.6683 -2.1187 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752822212.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:54 Heat of formation + Delta-G solvation = -41.040239 kcal Electronic energy + Delta-G solvation = -29755.690467 eV Core-core repulsion = 25810.601667 eV Total energy + Delta-G solvation = -3945.088799 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.51735 -40.71444 -39.46660 -38.12780 -36.31399 -35.78649 -35.22031 -32.69680 -31.57587 -31.31169 -30.45643 -28.40314 -27.29033 -26.07351 -24.65637 -23.77900 -22.86466 -22.38621 -21.55880 -20.75805 -19.37900 -18.57198 -18.48671 -18.24695 -17.27655 -17.01246 -16.69714 -16.30748 -15.97188 -15.83986 -15.55505 -15.17795 -15.11440 -15.01936 -14.96980 -14.67781 -14.15753 -14.04653 -13.88647 -13.67267 -13.41973 -13.27009 -13.16123 -12.96353 -12.86620 -12.81414 -12.63269 -12.46215 -12.05030 -11.99001 -11.77297 -11.65707 -11.35603 -11.25522 -11.11214 -10.97859 -10.55778 -10.50167 -9.96381 -8.99517 -8.84326 -8.13957 -5.37093 -0.11451 0.91649 1.43057 1.50532 1.53191 1.57514 1.72273 2.29065 2.55295 2.71925 3.21805 3.45048 3.58723 3.70911 3.74739 3.86218 3.88801 4.04633 4.08350 4.16891 4.17435 4.29502 4.33194 4.40143 4.42591 4.51064 4.62902 4.69113 4.79069 4.84564 4.87630 4.88856 5.00690 5.08232 5.09913 5.14474 5.24358 5.26169 5.28958 5.35067 5.47301 5.49168 5.61139 5.68207 5.96944 6.07392 6.46148 6.56494 6.98641 7.08438 7.16780 7.78985 8.25239 9.07928 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015278 B = 0.003591 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.237958 B = 7794.990412 C = 9063.612653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.036 3.964 3 C -0.228 4.228 4 C 0.138 3.862 5 N -0.481 5.481 6 C 0.073 3.927 7 C 0.496 3.504 8 O -0.587 6.587 9 N -0.684 5.684 10 C 0.143 3.857 11 C 0.163 3.837 12 H 0.043 0.957 13 C -0.124 4.124 14 C -0.101 4.101 15 C -0.132 4.132 16 C 0.155 3.845 17 N -0.609 5.609 18 C -0.325 4.325 19 H 0.041 0.959 20 C -0.047 4.047 21 N -0.937 5.937 22 Si 1.078 2.922 23 H -0.285 1.285 24 H -0.298 1.298 25 H -0.293 1.293 26 C 0.495 3.505 27 O -0.617 6.617 28 C -0.293 4.293 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.071 0.929 32 H 0.190 0.810 33 H 0.203 0.797 34 H 0.104 0.896 35 H 0.173 0.827 36 H 0.413 0.587 37 H 0.079 0.921 38 H 0.030 0.970 39 H 0.086 0.914 40 H 0.045 0.955 41 H 0.064 0.936 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.041 0.959 45 H 0.015 0.985 46 H 0.038 0.962 47 H 0.264 0.736 48 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.360 15.257 -1.116 19.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.032 3.968 3 C -0.250 4.250 4 C 0.012 3.988 5 N -0.190 5.190 6 C -0.053 4.053 7 C 0.281 3.719 8 O -0.469 6.469 9 N -0.334 5.334 10 C 0.019 3.981 11 C 0.057 3.943 12 H 0.061 0.939 13 C -0.164 4.164 14 C -0.138 4.138 15 C -0.171 4.171 16 C 0.030 3.970 17 N -0.335 5.335 18 C -0.455 4.455 19 H 0.058 0.942 20 C -0.247 4.247 21 N -0.579 5.579 22 Si 0.908 3.092 23 H -0.211 1.211 24 H -0.225 1.225 25 H -0.220 1.220 26 C 0.301 3.699 27 O -0.506 6.506 28 C -0.314 4.314 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.090 0.910 32 H 0.207 0.793 33 H 0.220 0.780 34 H 0.122 0.878 35 H 0.190 0.810 36 H 0.250 0.750 37 H 0.097 0.903 38 H 0.049 0.951 39 H 0.105 0.895 40 H 0.064 0.936 41 H 0.083 0.917 42 H 0.095 0.905 43 H 0.088 0.912 44 H 0.060 0.940 45 H 0.033 0.967 46 H 0.057 0.943 47 H 0.075 0.925 48 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -12.458 13.338 -0.663 18.263 hybrid contribution 0.566 0.120 -0.761 0.956 sum -11.892 13.458 -1.424 18.016 Atomic orbital electron populations 1.21033 0.87484 1.04662 1.04451 1.20676 0.98723 0.91831 0.85616 1.21088 0.92038 0.99925 1.11920 1.22765 0.94630 0.89463 0.91930 1.45096 1.07472 1.07844 1.58558 1.21872 0.79567 1.08677 0.95145 1.20972 0.82957 0.76335 0.91635 1.90651 1.56252 1.52803 1.47166 1.45899 1.06029 1.71441 1.09999 1.21224 0.94194 1.00049 0.82626 1.20801 0.90619 0.89556 0.93278 0.93899 1.21839 0.96723 1.01825 0.95977 1.21339 0.94989 0.96835 1.00686 1.21970 1.00037 0.98173 0.96925 1.20846 0.83875 0.98010 0.94313 1.44300 1.02608 1.25457 1.61101 1.19831 0.96302 1.22424 1.06952 0.94178 1.26131 1.00236 1.05265 0.93055 1.70860 1.26391 1.21878 1.38766 0.83268 0.74543 0.75554 0.75839 1.21097 1.22482 1.22036 1.17732 0.90646 0.82670 0.78896 1.90966 1.70429 1.32666 1.56489 1.21849 0.90939 1.01100 1.17555 0.88245 0.88321 0.91019 0.79294 0.77980 0.87774 0.80975 0.74957 0.90276 0.95106 0.89515 0.93592 0.91698 0.90546 0.91190 0.93991 0.96662 0.94310 0.92530 0.84316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.38 10.03 71.24 0.71 -0.66 16 2 C 0.04 0.72 5.89 -19.82 -0.12 0.60 16 3 C -0.23 -3.63 9.71 22.08 0.21 -3.41 16 4 C 0.14 2.67 10.28 83.42 0.86 3.53 16 5 N -0.48 -14.75 2.07 -655.06 -1.36 -16.11 16 6 C 0.07 2.26 5.81 85.63 0.50 2.76 16 7 C 0.50 18.89 7.90 87.66 0.69 19.58 16 8 O -0.59 -26.14 16.43 -3.05 -0.05 -26.19 16 9 N -0.68 -25.92 3.79 -463.06 -1.75 -27.67 16 10 C 0.14 5.38 4.43 86.38 0.38 5.77 16 11 C 0.16 5.95 3.01 44.83 0.13 6.08 16 12 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 13 C -0.12 -3.80 5.34 30.53 0.16 -3.63 16 14 C -0.10 -2.87 5.88 30.62 0.18 -2.69 16 15 C -0.13 -4.59 6.08 30.67 0.19 -4.40 16 16 C 0.15 6.78 4.68 86.36 0.40 7.18 16 17 N -0.61 -27.56 2.81 -676.02 -1.90 -29.46 16 18 C -0.32 -17.00 6.84 84.03 0.57 -16.42 16 19 H 0.04 2.29 5.88 -2.91 -0.02 2.27 16 20 C -0.05 -2.60 4.74 84.86 0.40 -2.20 16 21 N -0.94 -53.45 12.50 21.65 0.27 -53.18 16 22 Si 1.08 55.03 29.97 68.60 2.06 57.09 16 23 H -0.29 -14.44 7.11 99.48 0.71 -13.74 16 24 H -0.30 -15.91 7.11 99.48 0.71 -15.21 16 25 H -0.29 -14.74 7.11 99.48 0.71 -14.03 16 26 C 0.49 19.27 7.40 84.82 0.63 19.89 16 27 O -0.62 -31.34 16.64 -5.52 -0.09 -31.43 16 28 C -0.29 -8.91 9.65 22.40 0.22 -8.69 16 29 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.10 0.69 8.10 -2.39 -0.02 0.67 16 31 H 0.07 0.88 8.09 -2.39 -0.02 0.86 16 32 H 0.19 1.28 8.06 -2.91 -0.02 1.26 16 33 H 0.20 2.00 8.03 -2.91 -0.02 1.97 16 34 H 0.10 3.92 7.39 -2.38 -0.02 3.91 16 35 H 0.17 3.23 8.01 -2.39 -0.02 3.21 16 36 H 0.41 16.02 7.32 -92.71 -0.68 15.34 16 37 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 38 H 0.03 1.37 7.47 -2.39 -0.02 1.35 16 39 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 44 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.02 0.67 7.81 -2.38 -0.02 0.65 16 46 H 0.04 1.98 6.45 -2.39 -0.02 1.97 16 47 H 0.26 14.86 6.58 -92.71 -0.61 14.25 16 48 H 0.14 4.13 8.06 -2.91 -0.02 4.10 16 Total: -1.00 -82.89 383.73 3.75 -79.15 By element: Atomic # 1 Polarization: 24.08 SS G_CDS: 0.44 Total: 24.53 kcal Atomic # 6 Polarization: 17.15 SS G_CDS: 6.13 Total: 23.28 kcal Atomic # 7 Polarization: -121.68 SS G_CDS: -4.74 Total: -126.42 kcal Atomic # 8 Polarization: -57.48 SS G_CDS: -0.14 Total: -57.62 kcal Atomic # 14 Polarization: 55.03 SS G_CDS: 2.06 Total: 57.09 kcal Total: -82.89 3.75 -79.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752822212.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.107 kcal (2) G-P(sol) polarization free energy of solvation -82.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds