Wall clock time and date at job start Tue Mar 31 2020 18:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.40193 * 120.36648 * 2 1 4 4 C 1.35355 * 119.94492 * 179.97438 * 3 2 1 5 5 N 1.35757 * 120.70536 * 359.97438 * 4 3 2 6 6 C 1.46495 * 119.62952 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.47486 * 89.99714 * 6 5 4 8 8 O 1.21287 * 119.99746 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00317 * 180.02562 * 7 6 5 10 10 C 1.46496 * 120.00205 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.47409 * 179.97438 * 10 9 7 12 12 C 1.52992 * 109.47075 * 179.97438 * 11 10 9 13 13 H 1.08996 * 110.64390 * 54.30539 * 12 11 10 14 14 C 1.55165 * 110.71813 * 177.44345 * 12 11 10 15 15 C 1.55122 * 101.48453 * 153.73800 * 14 12 11 16 16 N 1.47420 * 104.94483 * 323.22029 * 15 14 12 17 17 C 1.36936 * 125.65295 * 203.97225 * 16 15 14 18 18 H 1.08001 * 120.00437 * 180.02562 * 17 16 15 19 19 C 1.38812 * 119.99622 * 0.03984 * 17 16 15 20 20 N 1.31618 * 120.00326 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99961 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47086 * 89.99802 * 21 19 17 23 23 H 1.48501 * 109.47037 * 209.99978 * 21 19 17 24 24 H 1.48498 * 109.47034 * 329.99973 * 21 19 17 25 25 C 1.47028 * 108.70407 * 24.00546 * 16 15 14 26 26 C 1.34663 * 120.74759 * 0.02562 * 5 4 3 27 27 O 1.22064 * 119.98095 * 179.97438 * 26 5 4 28 28 C 1.36399 * 120.36580 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.47126 * 90.00074 * 1 2 3 30 30 H 1.09002 * 109.46628 * 209.99679 * 1 2 3 31 31 H 1.09000 * 109.46635 * 329.99574 * 1 2 3 32 32 H 1.07997 * 120.02960 * 0.28029 * 3 2 1 33 33 H 1.08003 * 119.64137 * 179.97438 * 4 3 2 34 34 H 1.09000 * 109.47687 * 210.00012 * 6 5 4 35 35 H 1.09008 * 109.46593 * 329.99807 * 6 5 4 36 36 H 0.97006 * 119.99915 * 359.97438 * 9 7 6 37 37 H 1.08996 * 109.47040 * 299.99315 * 10 9 7 38 38 H 1.09000 * 109.47505 * 59.99202 * 10 9 7 39 39 H 1.08996 * 109.46973 * 299.99984 * 11 10 9 40 40 H 1.09008 * 109.46777 * 59.99759 * 11 10 9 41 41 H 1.09005 * 111.00214 * 271.93677 * 14 12 11 42 42 H 1.08996 * 111.00225 * 35.79141 * 14 12 11 43 43 H 1.09002 * 110.41760 * 204.29369 * 15 14 12 44 44 H 1.08998 * 110.30268 * 82.08807 * 15 14 12 45 45 H 0.96999 * 120.00264 * 179.97438 * 20 19 17 46 46 H 1.09001 * 109.88681 * 239.52809 * 25 16 15 47 47 H 1.08994 * 110.00949 * 118.42856 * 25 16 15 48 48 H 1.07999 * 120.34861 * 359.97224 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2158 1.2096 0.0000 4 6 3.5693 1.1996 0.0005 5 7 4.2539 0.0273 0.0016 6 6 5.7187 0.0441 0.0027 7 6 6.2200 0.0505 1.4239 8 8 5.4312 0.0415 2.3451 9 7 7.5448 0.0663 1.6711 10 6 8.0321 0.0720 3.0526 11 6 9.5620 0.0896 3.0538 12 6 10.0708 0.0962 4.4966 13 1 9.6469 -0.7368 5.0574 14 6 11.6214 0.0493 4.5321 15 6 11.9200 0.7340 5.8916 16 7 10.9064 1.7977 6.0124 17 6 11.0257 2.9316 6.7707 18 1 10.2228 3.6535 6.7929 19 6 12.1790 3.1533 7.5108 20 7 13.1579 2.2740 7.4832 21 14 12.3416 4.6998 8.5459 22 1 11.8142 4.4404 9.9096 23 1 13.7722 5.0883 8.6340 24 1 11.5677 5.8001 7.9169 25 6 9.7457 1.4390 5.1843 26 6 3.6017 -1.1508 0.0016 27 8 4.2313 -2.1966 0.0021 28 6 2.1966 -1.1769 -0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3632 0.8900 0.5139 32 1 1.6823 2.1486 0.0046 33 1 4.1103 2.1344 0.0001 34 1 6.0927 -0.8419 -0.5104 35 1 6.0722 0.9380 -0.5114 36 1 8.1757 0.0731 0.9343 37 1 7.6579 0.9576 3.5662 38 1 7.6789 -0.8222 3.5662 39 1 9.9359 -0.7962 2.5403 40 1 9.9154 0.9837 2.5401 41 1 11.9814 -0.9795 4.5223 42 1 12.0484 0.6190 3.7069 43 1 12.9219 1.1634 5.8891 44 1 11.8171 0.0177 6.7066 45 1 13.9640 2.4291 8.0001 46 1 9.5749 2.2089 4.4318 47 1 8.8602 1.3299 5.8105 48 1 1.6683 -2.1188 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753337264.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:34 Heat of formation + Delta-G solvation = -44.104379 kcal Electronic energy + Delta-G solvation = -27699.608981 eV Core-core repulsion = 23754.387311 eV Total energy + Delta-G solvation = -3945.221670 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.52152 -40.59721 -39.40180 -38.10870 -36.64904 -36.14168 -34.80202 -32.68671 -31.46800 -30.78686 -30.32434 -28.57545 -27.50683 -26.33171 -24.66243 -23.73885 -22.70197 -21.99652 -21.77096 -20.76519 -18.91266 -18.72857 -18.53402 -18.42780 -17.13703 -17.03381 -16.77687 -16.62821 -16.35533 -16.18956 -15.57268 -15.20013 -15.06481 -14.99291 -14.75900 -14.27644 -14.16493 -13.86254 -13.66134 -13.51465 -13.37662 -13.31943 -13.14094 -12.97650 -12.87389 -12.84055 -12.69258 -12.47182 -12.25489 -12.00393 -11.79021 -11.61862 -11.45831 -11.32612 -11.19719 -11.09356 -10.75347 -10.57642 -10.19381 -8.99353 -8.88556 -7.78072 -5.22616 -0.12767 0.91099 1.43680 1.44929 1.47155 1.47400 1.55925 2.14148 2.48832 2.69230 3.30764 3.58418 3.66596 3.72468 3.73074 3.76475 3.88229 3.92682 4.08949 4.15845 4.17711 4.29767 4.32978 4.34233 4.40484 4.61422 4.69411 4.72814 4.78518 4.82714 4.87161 4.89921 5.00961 5.09494 5.10415 5.16993 5.23965 5.24735 5.35742 5.43245 5.48828 5.50431 5.65140 5.67826 5.82921 6.04362 6.31699 6.42683 6.95626 7.10826 7.12347 7.78930 8.42896 9.23562 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021341 B = 0.001875 C = 0.001769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.718510 B =14933.555164 C =15825.738124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.032 3.968 3 C -0.232 4.232 4 C 0.140 3.860 5 N -0.484 5.484 6 C 0.073 3.927 7 C 0.494 3.506 8 O -0.583 6.583 9 N -0.707 5.707 10 C 0.125 3.875 11 C -0.098 4.098 12 C -0.086 4.086 13 H 0.072 0.928 14 C -0.121 4.121 15 C 0.148 3.852 16 N -0.629 5.629 17 C -0.240 4.240 18 H 0.078 0.922 19 C -0.070 4.070 20 N -0.949 5.949 21 Si 0.981 3.019 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.268 1.268 25 C 0.135 3.865 26 C 0.503 3.497 27 O -0.611 6.611 28 C -0.293 4.293 29 H 0.099 0.901 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.181 0.819 33 H 0.203 0.797 34 H 0.132 0.868 35 H 0.179 0.821 36 H 0.422 0.578 37 H 0.053 0.947 38 H 0.051 0.949 39 H 0.096 0.904 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.071 0.929 43 H 0.072 0.928 44 H -0.020 1.020 45 H 0.247 0.753 46 H 0.031 0.969 47 H 0.008 0.992 48 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.361 -1.059 -23.978 31.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.028 3.972 3 C -0.254 4.254 4 C 0.014 3.986 5 N -0.193 5.193 6 C -0.052 4.052 7 C 0.280 3.720 8 O -0.462 6.462 9 N -0.360 5.360 10 C 0.001 3.999 11 C -0.136 4.136 12 C -0.106 4.106 13 H 0.091 0.909 14 C -0.159 4.159 15 C 0.023 3.977 16 N -0.355 5.355 17 C -0.369 4.369 18 H 0.096 0.904 19 C -0.262 4.262 20 N -0.599 5.599 21 Si 0.809 3.191 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.193 1.193 25 C 0.010 3.990 26 C 0.308 3.692 27 O -0.499 6.499 28 C -0.315 4.315 29 H 0.117 0.883 30 H 0.090 0.910 31 H 0.111 0.889 32 H 0.198 0.802 33 H 0.220 0.780 34 H 0.150 0.850 35 H 0.197 0.803 36 H 0.260 0.740 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.114 0.886 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.090 0.910 43 H 0.090 0.910 44 H -0.002 1.002 45 H 0.057 0.943 46 H 0.049 0.951 47 H 0.026 0.974 48 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -20.354 -1.607 -23.200 30.905 hybrid contribution 0.607 0.310 1.137 1.325 sum -19.747 -1.297 -22.064 29.638 Atomic orbital electron populations 1.21043 0.88084 1.04482 1.04377 1.20644 0.98502 0.92156 0.85858 1.21063 0.92569 0.99779 1.12012 1.22698 0.94411 0.89753 0.91740 1.45083 1.08103 1.07387 1.58740 1.22056 0.78945 1.10165 0.94033 1.21338 0.82923 0.75631 0.92143 1.90757 1.56566 1.51121 1.47772 1.45770 1.06493 1.74122 1.09607 1.21276 0.94920 1.01190 0.82557 1.21626 0.92235 1.04407 0.95366 1.22017 0.96161 0.96296 0.96122 0.90920 1.22910 0.94705 1.00656 0.97674 1.21803 0.95242 0.88241 0.92376 1.44860 1.16154 1.21204 1.53251 1.19460 1.00953 0.96955 1.19581 0.90420 1.25664 0.96532 1.01925 1.02093 1.70063 1.07407 1.36769 1.45626 0.85037 0.76705 0.79018 0.78322 1.21631 1.21677 1.19299 1.21553 0.89309 0.95393 0.92734 1.17486 0.90274 0.82716 0.78712 1.90896 1.70211 1.32212 1.56625 1.21904 0.91710 1.00749 1.17110 0.88287 0.90986 0.88869 0.80165 0.78016 0.85037 0.80335 0.73995 0.92824 0.93072 0.88560 0.89911 0.89772 0.91007 0.90952 1.00221 0.94335 0.95140 0.97399 0.84292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.91 10.03 71.24 0.71 -0.19 16 2 C 0.03 0.46 5.89 -19.82 -0.12 0.34 16 3 C -0.23 -2.37 9.71 22.08 0.21 -2.15 16 4 C 0.14 1.56 10.28 83.42 0.86 2.42 16 5 N -0.48 -8.93 2.07 -655.06 -1.36 -10.29 16 6 C 0.07 0.98 5.81 85.63 0.50 1.48 16 7 C 0.49 10.83 7.89 87.66 0.69 11.52 16 8 O -0.58 -19.37 16.43 -3.05 -0.05 -19.42 16 9 N -0.71 -12.38 5.56 -463.07 -2.57 -14.95 16 10 C 0.12 2.94 5.54 86.38 0.48 3.42 16 11 C -0.10 -2.13 4.72 30.59 0.14 -1.99 16 12 C -0.09 -2.75 2.95 -9.60 -0.03 -2.78 16 13 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 14 C -0.12 -4.25 6.55 32.06 0.21 -4.04 16 15 C 0.15 7.41 5.89 86.93 0.51 7.92 16 16 N -0.63 -33.17 3.40 -691.56 -2.35 -35.51 16 17 C -0.24 -13.82 10.27 84.03 0.86 -12.96 16 18 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 19 C -0.07 -4.03 5.49 84.86 0.47 -3.57 16 20 N -0.95 -57.36 10.09 21.65 0.22 -57.15 16 21 Si 0.98 46.26 29.55 68.60 2.03 48.29 16 22 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 23 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 24 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 25 C 0.14 5.60 6.11 86.73 0.53 6.13 16 26 C 0.50 13.50 7.40 84.82 0.63 14.13 16 27 O -0.61 -21.58 16.64 -5.52 -0.09 -21.68 16 28 C -0.29 -6.42 9.65 22.40 0.22 -6.20 16 29 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.07 0.59 8.09 -2.39 -0.02 0.57 16 31 H 0.09 0.38 8.10 -2.39 -0.02 0.36 16 32 H 0.18 0.55 8.06 -2.91 -0.02 0.52 16 33 H 0.20 0.47 8.04 -2.91 -0.02 0.45 16 34 H 0.13 1.81 7.39 -2.39 -0.02 1.79 16 35 H 0.18 0.29 8.01 -2.38 -0.02 0.27 16 36 H 0.42 3.85 8.47 -92.70 -0.79 3.07 16 37 H 0.05 1.50 7.58 -2.39 -0.02 1.48 16 38 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.08 1.68 8.00 -2.38 -0.02 1.66 16 41 H 0.08 2.53 8.14 -2.38 -0.02 2.51 16 42 H 0.07 2.38 8.05 -2.39 -0.02 2.36 16 43 H 0.07 4.10 5.87 -2.39 -0.01 4.08 16 44 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 45 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 46 H 0.03 1.21 7.73 -2.39 -0.02 1.19 16 47 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 48 H 0.14 3.00 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -90.91 393.83 2.88 -88.03 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: 0.17 Total: 9.20 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: 6.88 Total: 13.47 kcal Atomic # 7 Polarization: -111.83 SS G_CDS: -6.06 Total: -117.89 kcal Atomic # 8 Polarization: -40.96 SS G_CDS: -0.14 Total: -41.10 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -90.91 2.88 -88.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753337264.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.925 kcal (2) G-P(sol) polarization free energy of solvation -90.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds