Wall clock time and date at job start Tue Mar 31 2020 18:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40195 * 120.36378 * 2 1 4 4 C 1.35352 * 119.94402 * 179.76609 * 3 2 1 5 5 N 1.35765 * 120.70293 * 0.51304 * 4 3 2 6 6 C 1.46501 * 119.62469 * 179.76180 * 5 4 3 7 7 C 1.50700 * 109.46827 * 269.72472 * 6 5 4 8 8 O 1.21280 * 120.00058 * 359.97438 * 7 6 5 9 9 N 1.34775 * 119.99856 * 180.02562 * 7 6 5 10 10 C 1.46497 * 120.00083 * 179.97438 * 9 7 6 11 11 C 1.53005 * 109.47062 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46967 * 180.02562 * 11 10 9 13 13 H 1.08999 * 110.78170 * 308.24051 * 12 11 10 14 14 C 1.55158 * 110.72145 * 184.99928 * 12 11 10 15 15 C 1.54909 * 101.61642 * 206.15534 * 14 12 11 16 16 N 1.47423 * 104.83351 * 36.99324 * 15 14 12 17 17 C 1.36936 * 125.64594 * 155.90840 * 16 15 14 18 18 H 1.08007 * 120.00033 * 179.97438 * 17 16 15 19 19 C 1.38813 * 120.00281 * 359.97114 * 17 16 15 20 20 N 1.31616 * 120.00050 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99983 * 180.02562 * 19 17 16 22 22 H 1.48510 * 109.47129 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47513 * 119.99988 * 21 19 17 24 24 H 1.48502 * 109.47290 * 240.00176 * 21 19 17 25 25 C 1.47016 * 108.70440 * 335.86643 * 16 15 14 26 26 C 1.34656 * 120.74960 * 359.48053 * 5 4 3 27 27 O 1.22058 * 119.98404 * 180.28064 * 26 5 4 28 28 C 1.36397 * 120.36669 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47406 * 269.97865 * 1 2 3 30 30 H 1.08999 * 109.47501 * 29.98288 * 1 2 3 31 31 H 1.09003 * 109.47257 * 149.98130 * 1 2 3 32 32 H 1.08003 * 120.02820 * 0.03732 * 3 2 1 33 33 H 1.07999 * 119.64884 * 180.27335 * 4 3 2 34 34 H 1.08998 * 109.46992 * 149.72161 * 6 5 4 35 35 H 1.09005 * 109.47036 * 29.71900 * 6 5 4 36 36 H 0.97002 * 120.00212 * 359.97438 * 9 7 6 37 37 H 1.09007 * 109.46821 * 60.00505 * 10 9 7 38 38 H 1.08996 * 109.47722 * 300.00172 * 10 9 7 39 39 H 1.08996 * 109.47404 * 60.00468 * 11 10 9 40 40 H 1.09005 * 109.47092 * 300.00001 * 11 10 9 41 41 H 1.09002 * 111.00366 * 88.06052 * 14 12 11 42 42 H 1.09002 * 111.00429 * 324.25114 * 14 12 11 43 43 H 1.09000 * 110.36449 * 155.82966 * 15 14 12 44 44 H 1.09002 * 110.36579 * 278.03887 * 15 14 12 45 45 H 0.96996 * 120.00056 * 180.02562 * 20 19 17 46 46 H 1.09000 * 109.88531 * 120.47268 * 25 16 15 47 47 H 1.08996 * 109.88671 * 241.49081 * 25 16 15 48 48 H 1.07999 * 120.35151 * 359.95245 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2157 1.2096 0.0000 4 6 3.5692 1.1997 0.0048 5 7 4.2538 0.0274 -0.0008 6 6 5.7187 0.0442 -0.0008 7 6 6.2210 0.0500 -1.4216 8 8 5.4330 0.0405 -2.3434 9 7 7.5460 0.0648 -1.6678 10 6 8.0344 0.0698 -3.0490 11 6 9.5643 0.0862 -3.0489 12 6 10.0743 0.0922 -4.4914 13 1 9.6172 -0.7130 -5.0665 14 6 11.6216 -0.0177 -4.5271 15 6 11.9520 0.6692 -5.8757 16 7 10.9865 1.7783 -5.9809 17 6 11.1571 2.9173 -6.7216 18 1 10.3868 3.6743 -6.7334 19 6 12.3200 3.0991 -7.4574 20 7 13.2586 2.1765 -7.4435 21 14 12.5530 4.6532 -8.4673 22 1 11.3607 5.5256 -8.3155 23 1 13.7597 5.3763 -7.9919 24 1 12.7232 4.2931 -9.8979 25 6 9.8098 1.4585 -5.1596 26 6 3.6017 -1.1507 -0.0008 27 8 4.2313 -2.1964 -0.0007 28 6 2.1965 -1.1768 -0.0005 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3634 0.8901 -0.5135 31 1 -0.3634 -0.8898 -0.5141 32 1 1.6821 2.1487 0.0006 33 1 4.1103 2.1344 0.0092 34 1 6.0922 -0.8414 0.5131 35 1 6.0718 0.9385 0.5130 36 1 8.1763 0.0720 -0.9305 37 1 7.6611 0.9556 -3.5630 38 1 7.6811 -0.8243 -3.5626 39 1 9.9372 -0.7997 -2.5350 40 1 9.9180 0.9802 -2.5352 41 1 11.9393 -1.0603 -4.5315 42 1 12.0709 0.5219 -3.6933 43 1 12.9719 1.0538 -5.8656 44 1 11.8195 -0.0310 -6.7005 45 1 14.0714 2.3037 -7.9573 46 1 9.6719 2.2235 -4.3955 47 1 8.9225 1.4002 -5.7900 48 1 1.6683 -2.1188 -0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753337265.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:39 Heat of formation + Delta-G solvation = -17.688433 kcal Electronic energy + Delta-G solvation = -27681.573925 eV Core-core repulsion = 23737.497736 eV Total energy + Delta-G solvation = -3944.076189 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -41.78731 -39.65434 -37.83396 -37.29160 -35.72249 -35.19557 -33.11013 -31.31696 -30.58409 -29.75767 -28.98988 -27.56486 -26.21063 -24.61883 -24.03153 -22.49963 -21.90430 -20.94899 -20.10628 -19.38519 -17.96426 -17.84065 -17.66661 -16.88081 -16.34213 -15.87510 -15.79433 -15.42560 -15.13211 -14.62445 -14.56170 -14.38866 -13.98378 -13.91414 -13.68122 -13.57480 -13.08520 -12.73355 -12.54502 -12.47163 -12.29230 -12.11030 -11.97462 -11.90596 -11.71666 -11.58994 -11.10318 -10.91070 -10.78160 -10.55121 -10.23744 -10.14807 -10.06824 -9.96043 -9.82941 -9.74165 -9.46087 -9.23631 -8.64143 -8.27005 -6.81011 -5.64200 -3.05562 0.50745 1.59438 2.13192 2.31605 2.93807 3.39677 3.42275 3.45176 3.47741 4.13776 4.22423 4.33778 4.41201 4.49928 4.63009 4.70521 4.88508 4.90760 4.96780 5.07275 5.13998 5.20679 5.27020 5.43402 5.48470 5.57464 5.61296 5.62494 5.73063 5.77804 5.85625 6.00407 6.05328 6.12238 6.19327 6.20337 6.31026 6.38371 6.61244 6.63869 6.74933 6.76984 6.97871 7.21282 7.54376 7.64865 7.77162 7.87302 7.93093 8.38096 9.23858 9.84961 10.50389 11.39775 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021912 B = 0.001857 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.546784 B =15073.436268 C =15930.533989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.016 3.984 3 C -0.229 4.229 4 C 0.144 3.856 5 N -0.482 5.482 6 C 0.070 3.930 7 C 0.498 3.502 8 O -0.526 6.526 9 N -0.723 5.723 10 C 0.118 3.882 11 C -0.116 4.116 12 C -0.098 4.098 13 H 0.072 0.928 14 C -0.138 4.138 15 C 0.151 3.849 16 N -0.605 5.605 17 C -0.220 4.220 18 H 0.077 0.923 19 C -0.014 4.014 20 N -0.922 5.922 21 Si 0.914 3.086 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.140 3.860 26 C 0.522 3.478 27 O -0.553 6.553 28 C -0.248 4.248 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.146 0.854 33 H 0.162 0.838 34 H 0.130 0.870 35 H 0.122 0.878 36 H 0.401 0.599 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.105 0.895 44 H 0.011 0.989 45 H 0.251 0.749 46 H 0.021 0.979 47 H 0.019 0.981 48 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.823 -2.908 21.508 29.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.012 3.988 3 C -0.252 4.252 4 C 0.018 3.982 5 N -0.193 5.193 6 C -0.056 4.056 7 C 0.281 3.719 8 O -0.401 6.401 9 N -0.375 5.375 10 C -0.005 4.005 11 C -0.154 4.154 12 C -0.118 4.118 13 H 0.091 0.909 14 C -0.177 4.177 15 C 0.026 3.974 16 N -0.331 5.331 17 C -0.349 4.349 18 H 0.095 0.905 19 C -0.209 4.209 20 N -0.572 5.572 21 Si 0.745 3.255 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C 0.014 3.986 26 C 0.325 3.675 27 O -0.435 6.435 28 C -0.270 4.270 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.163 0.837 33 H 0.179 0.821 34 H 0.148 0.852 35 H 0.140 0.860 36 H 0.235 0.765 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.123 0.877 44 H 0.029 0.971 45 H 0.062 0.938 46 H 0.039 0.961 47 H 0.037 0.963 48 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -19.817 -3.494 20.667 28.846 hybrid contribution 0.442 0.862 -0.351 1.031 sum -19.376 -2.632 20.316 28.197 Atomic orbital electron populations 1.20933 0.90317 1.03681 1.03048 1.20217 0.96822 0.92659 0.89101 1.20538 0.92350 0.98977 1.13318 1.21902 0.93661 0.89454 0.93232 1.45022 1.07124 1.07339 1.59784 1.21804 0.79915 1.07365 0.96472 1.20650 0.83062 0.77060 0.91092 1.90777 1.55201 1.48456 1.45702 1.45977 1.06369 1.75167 1.09998 1.21550 0.94753 1.02854 0.81318 1.21793 0.92812 1.02406 0.98361 1.22107 0.97318 0.98729 0.93623 0.90923 1.23040 0.93602 0.99724 1.01336 1.21921 0.97642 0.87980 0.89876 1.44527 1.15517 1.19163 1.53925 1.19137 1.01477 0.94494 1.19782 0.90507 1.24795 0.96882 0.98544 1.00663 1.69814 1.08567 1.33490 1.45280 0.86000 0.77542 0.82253 0.79731 1.20550 1.21768 1.21774 1.21368 0.91111 0.92843 0.93252 1.17088 0.89383 0.82397 0.78640 1.90956 1.69137 1.30281 1.53123 1.21916 0.92215 0.99604 1.13250 0.90101 0.90691 0.90775 0.83653 0.82096 0.85216 0.85972 0.76453 0.90848 0.91378 0.91510 0.91095 0.92468 0.92199 0.87686 0.97129 0.93830 0.96067 0.96324 0.83545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.58 10.03 36.01 0.36 -0.22 16 2 C 0.02 0.12 5.89 -104.55 -0.62 -0.50 16 3 C -0.23 -1.51 9.71 -39.88 -0.39 -1.89 16 4 C 0.14 1.02 10.28 -16.84 -0.17 0.84 16 5 N -0.48 -4.74 2.07 -121.06 -0.25 -4.99 16 6 C 0.07 0.55 5.82 -5.19 -0.03 0.52 16 7 C 0.50 5.79 7.90 -10.99 -0.09 5.71 16 8 O -0.53 -8.70 16.43 5.56 0.09 -8.61 16 9 N -0.72 -7.17 5.56 -60.29 -0.33 -7.50 16 10 C 0.12 1.48 5.56 -4.04 -0.02 1.46 16 11 C -0.12 -1.44 4.73 -26.73 -0.13 -1.56 16 12 C -0.10 -1.65 2.93 -88.75 -0.26 -1.91 16 13 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 14 C -0.14 -2.55 6.53 -24.58 -0.16 -2.71 16 15 C 0.15 3.68 5.89 -2.53 -0.01 3.67 16 16 N -0.61 -15.71 3.39 -170.04 -0.58 -16.29 16 17 C -0.22 -6.24 10.27 -15.06 -0.15 -6.39 16 18 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 19 C -0.01 -0.39 5.49 -17.43 -0.10 -0.48 16 20 N -0.92 -27.14 10.09 55.49 0.56 -26.58 16 21 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 C 0.14 2.92 6.24 -3.04 -0.02 2.91 16 26 C 0.52 6.74 7.40 -15.45 -0.11 6.63 16 27 O -0.55 -9.11 16.64 4.87 0.08 -9.03 16 28 C -0.25 -2.59 9.65 -39.38 -0.38 -2.97 16 29 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.27 8.10 -51.93 -0.42 -0.15 16 31 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 32 H 0.15 0.56 8.06 -52.48 -0.42 0.14 16 33 H 0.16 0.58 8.03 -52.49 -0.42 0.16 16 34 H 0.13 0.99 7.39 -51.93 -0.38 0.60 16 35 H 0.12 0.39 8.01 -51.93 -0.42 -0.02 16 36 H 0.40 2.58 8.47 -40.82 -0.35 2.23 16 37 H 0.07 1.05 7.69 -51.93 -0.40 0.65 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.86 7.93 -51.93 -0.41 0.45 16 41 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.06 1.07 8.05 -51.93 -0.42 0.65 16 43 H 0.11 2.88 5.88 -51.93 -0.31 2.57 16 44 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 46 H 0.02 0.43 7.68 -51.93 -0.40 0.04 16 47 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.15 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 393.94 15.07 5.94 5.94 Total: -1.00 -38.36 393.94 -9.49 -47.85 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -7.69 Total: -1.11 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -2.28 Total: 3.10 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: -0.60 Total: -55.37 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: 0.17 Total: -17.64 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -38.36 -9.49 -47.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753337265.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.157 kcal (2) G-P(sol) polarization free energy of solvation -38.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds