Wall clock time and date at job start Tue Mar 31 2020 18:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40195 * 120.36378 * 2 1 4 4 C 1.35352 * 119.94402 * 179.76609 * 3 2 1 5 5 N 1.35765 * 120.70293 * 0.51304 * 4 3 2 6 6 C 1.46501 * 119.62469 * 179.76180 * 5 4 3 7 7 C 1.50700 * 109.46827 * 269.72472 * 6 5 4 8 8 O 1.21280 * 120.00058 * 359.97438 * 7 6 5 9 9 N 1.34775 * 119.99856 * 180.02562 * 7 6 5 10 10 C 1.46497 * 120.00083 * 179.97438 * 9 7 6 11 11 C 1.53005 * 109.47062 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46967 * 180.02562 * 11 10 9 13 13 H 1.08999 * 110.78170 * 308.24051 * 12 11 10 14 14 C 1.55158 * 110.72145 * 184.99928 * 12 11 10 15 15 C 1.54909 * 101.61642 * 206.15534 * 14 12 11 16 16 N 1.47423 * 104.83351 * 36.99324 * 15 14 12 17 17 C 1.36936 * 125.64594 * 155.90840 * 16 15 14 18 18 H 1.08007 * 120.00033 * 179.97438 * 17 16 15 19 19 C 1.38813 * 120.00281 * 359.97114 * 17 16 15 20 20 N 1.31616 * 120.00050 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99983 * 180.02562 * 19 17 16 22 22 H 1.48510 * 109.47129 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47513 * 119.99988 * 21 19 17 24 24 H 1.48502 * 109.47290 * 240.00176 * 21 19 17 25 25 C 1.47016 * 108.70440 * 335.86643 * 16 15 14 26 26 C 1.34656 * 120.74960 * 359.48053 * 5 4 3 27 27 O 1.22058 * 119.98404 * 180.28064 * 26 5 4 28 28 C 1.36397 * 120.36669 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47406 * 269.97865 * 1 2 3 30 30 H 1.08999 * 109.47501 * 29.98288 * 1 2 3 31 31 H 1.09003 * 109.47257 * 149.98130 * 1 2 3 32 32 H 1.08003 * 120.02820 * 0.03732 * 3 2 1 33 33 H 1.07999 * 119.64884 * 180.27335 * 4 3 2 34 34 H 1.08998 * 109.46992 * 149.72161 * 6 5 4 35 35 H 1.09005 * 109.47036 * 29.71900 * 6 5 4 36 36 H 0.97002 * 120.00212 * 359.97438 * 9 7 6 37 37 H 1.09007 * 109.46821 * 60.00505 * 10 9 7 38 38 H 1.08996 * 109.47722 * 300.00172 * 10 9 7 39 39 H 1.08996 * 109.47404 * 60.00468 * 11 10 9 40 40 H 1.09005 * 109.47092 * 300.00001 * 11 10 9 41 41 H 1.09002 * 111.00366 * 88.06052 * 14 12 11 42 42 H 1.09002 * 111.00429 * 324.25114 * 14 12 11 43 43 H 1.09000 * 110.36449 * 155.82966 * 15 14 12 44 44 H 1.09002 * 110.36579 * 278.03887 * 15 14 12 45 45 H 0.96996 * 120.00056 * 180.02562 * 20 19 17 46 46 H 1.09000 * 109.88531 * 120.47268 * 25 16 15 47 47 H 1.08996 * 109.88671 * 241.49081 * 25 16 15 48 48 H 1.07999 * 120.35151 * 359.95245 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2157 1.2096 0.0000 4 6 3.5692 1.1997 0.0048 5 7 4.2538 0.0274 -0.0008 6 6 5.7187 0.0442 -0.0008 7 6 6.2210 0.0500 -1.4216 8 8 5.4330 0.0405 -2.3434 9 7 7.5460 0.0648 -1.6678 10 6 8.0344 0.0698 -3.0490 11 6 9.5643 0.0862 -3.0489 12 6 10.0743 0.0922 -4.4914 13 1 9.6172 -0.7130 -5.0665 14 6 11.6216 -0.0177 -4.5271 15 6 11.9520 0.6692 -5.8757 16 7 10.9865 1.7783 -5.9809 17 6 11.1571 2.9173 -6.7216 18 1 10.3868 3.6743 -6.7334 19 6 12.3200 3.0991 -7.4574 20 7 13.2586 2.1765 -7.4435 21 14 12.5530 4.6532 -8.4673 22 1 11.3607 5.5256 -8.3155 23 1 13.7597 5.3763 -7.9919 24 1 12.7232 4.2931 -9.8979 25 6 9.8098 1.4585 -5.1596 26 6 3.6017 -1.1507 -0.0008 27 8 4.2313 -2.1964 -0.0007 28 6 2.1965 -1.1768 -0.0005 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3634 0.8901 -0.5135 31 1 -0.3634 -0.8898 -0.5141 32 1 1.6821 2.1487 0.0006 33 1 4.1103 2.1344 0.0092 34 1 6.0922 -0.8414 0.5131 35 1 6.0718 0.9385 0.5130 36 1 8.1763 0.0720 -0.9305 37 1 7.6611 0.9556 -3.5630 38 1 7.6811 -0.8243 -3.5626 39 1 9.9372 -0.7997 -2.5350 40 1 9.9180 0.9802 -2.5352 41 1 11.9393 -1.0603 -4.5315 42 1 12.0709 0.5219 -3.6933 43 1 12.9719 1.0538 -5.8656 44 1 11.8195 -0.0310 -6.7005 45 1 14.0714 2.3037 -7.9573 46 1 9.6719 2.2235 -4.3955 47 1 8.9225 1.4002 -5.7900 48 1 1.6683 -2.1188 -0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753337265.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:38 Heat of formation + Delta-G solvation = -44.167641 kcal Electronic energy + Delta-G solvation = -27682.722150 eV Core-core repulsion = 23737.497736 eV Total energy + Delta-G solvation = -3945.224414 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.52043 -40.59575 -39.40669 -38.10887 -36.65022 -36.14146 -34.80262 -32.68955 -31.46691 -30.78762 -30.32617 -28.58661 -27.50954 -26.32867 -24.66161 -23.72186 -22.69811 -21.99368 -21.77941 -20.77595 -18.91395 -18.73204 -18.53328 -18.42752 -17.12596 -17.03420 -16.77744 -16.63266 -16.36190 -16.18406 -15.56990 -15.19997 -15.06503 -14.99624 -14.76102 -14.27555 -14.16488 -13.86794 -13.66100 -13.51620 -13.37960 -13.31899 -13.13694 -12.97517 -12.87299 -12.82754 -12.71504 -12.47088 -12.25334 -11.98020 -11.79565 -11.62262 -11.45248 -11.32930 -11.19908 -11.09327 -10.76077 -10.57581 -10.19291 -8.99280 -8.88587 -7.78420 -5.22842 -0.12678 0.91196 1.43724 1.44933 1.46231 1.47446 1.56602 2.14322 2.48571 2.69334 3.30673 3.58501 3.66597 3.72612 3.73117 3.76504 3.88297 3.92189 4.08977 4.16322 4.17805 4.30008 4.32777 4.34280 4.40550 4.61585 4.69104 4.72783 4.78557 4.82730 4.87732 4.89996 5.01293 5.09373 5.10457 5.17195 5.24039 5.24598 5.35841 5.43463 5.48902 5.50609 5.65242 5.67821 5.82804 6.04477 6.31493 6.42794 6.95738 7.10703 7.12415 7.78749 8.42707 9.23515 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021912 B = 0.001857 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.546784 B =15073.436268 C =15930.533989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.032 3.968 3 C -0.232 4.232 4 C 0.140 3.860 5 N -0.484 5.484 6 C 0.073 3.927 7 C 0.494 3.506 8 O -0.582 6.582 9 N -0.707 5.707 10 C 0.125 3.875 11 C -0.098 4.098 12 C -0.086 4.086 13 H 0.072 0.928 14 C -0.121 4.121 15 C 0.148 3.852 16 N -0.629 5.629 17 C -0.239 4.239 18 H 0.078 0.922 19 C -0.070 4.070 20 N -0.949 5.949 21 Si 0.981 3.019 22 H -0.267 1.267 23 H -0.288 1.288 24 H -0.294 1.294 25 C 0.135 3.865 26 C 0.503 3.497 27 O -0.611 6.611 28 C -0.293 4.293 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.071 0.929 32 H 0.181 0.819 33 H 0.203 0.797 34 H 0.132 0.868 35 H 0.179 0.821 36 H 0.422 0.578 37 H 0.054 0.946 38 H 0.051 0.949 39 H 0.096 0.904 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.072 0.928 44 H -0.020 1.020 45 H 0.247 0.753 46 H 0.031 0.969 47 H 0.008 0.992 48 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.805 -0.861 23.860 31.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.028 3.972 3 C -0.254 4.254 4 C 0.014 3.986 5 N -0.193 5.193 6 C -0.052 4.052 7 C 0.280 3.720 8 O -0.462 6.462 9 N -0.360 5.360 10 C 0.001 3.999 11 C -0.136 4.136 12 C -0.106 4.106 13 H 0.091 0.909 14 C -0.160 4.160 15 C 0.023 3.977 16 N -0.355 5.355 17 C -0.368 4.368 18 H 0.096 0.904 19 C -0.262 4.262 20 N -0.599 5.599 21 Si 0.809 3.191 22 H -0.192 1.192 23 H -0.215 1.215 24 H -0.221 1.221 25 C 0.010 3.990 26 C 0.308 3.692 27 O -0.499 6.499 28 C -0.315 4.315 29 H 0.117 0.883 30 H 0.111 0.889 31 H 0.090 0.910 32 H 0.198 0.802 33 H 0.220 0.780 34 H 0.149 0.851 35 H 0.197 0.803 36 H 0.260 0.740 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.114 0.886 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.090 0.910 43 H 0.090 0.910 44 H -0.002 1.002 45 H 0.057 0.943 46 H 0.049 0.951 47 H 0.026 0.974 48 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -20.804 -1.413 23.077 31.103 hybrid contribution 0.671 0.312 -1.112 1.335 sum -20.134 -1.101 21.966 29.817 Atomic orbital electron populations 1.21041 0.88089 1.04485 1.04374 1.20642 0.98498 0.92158 0.85868 1.21066 0.92578 0.99777 1.11997 1.22703 0.94405 0.89746 0.91756 1.45082 1.08105 1.07390 1.58747 1.22056 0.78937 1.10159 0.94052 1.21331 0.82918 0.75631 0.92135 1.90755 1.56618 1.51113 1.47713 1.45772 1.06487 1.74130 1.09620 1.21277 0.94866 1.01204 0.82568 1.21626 0.92251 1.04401 0.95347 1.22024 0.96226 0.96113 0.96206 0.90912 1.22876 0.94723 1.00612 0.97754 1.21762 0.95961 0.87504 0.92443 1.44872 1.17480 1.18871 1.54270 1.19501 1.01597 0.95506 1.20221 0.90383 1.25662 0.96774 1.01713 1.02100 1.70071 1.08770 1.35160 1.45906 0.84968 0.77736 0.78767 0.77607 1.19164 1.21455 1.22091 1.21571 0.89015 0.95556 0.92857 1.17483 0.90273 0.82716 0.78716 1.90895 1.70212 1.32218 1.56623 1.21906 0.91712 1.00749 1.17103 0.88293 0.88865 0.90991 0.80155 0.77993 0.85055 0.80333 0.74002 0.92796 0.93051 0.88598 0.89903 0.89845 0.91010 0.90978 1.00184 0.94347 0.95097 0.97366 0.84299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.90 10.03 71.24 0.71 -0.19 16 2 C 0.03 0.46 5.89 -19.82 -0.12 0.34 16 3 C -0.23 -2.35 9.71 22.08 0.21 -2.13 16 4 C 0.14 1.54 10.28 83.42 0.86 2.40 16 5 N -0.48 -8.89 2.07 -655.06 -1.36 -10.25 16 6 C 0.07 0.97 5.82 85.63 0.50 1.47 16 7 C 0.49 10.78 7.90 87.66 0.69 11.47 16 8 O -0.58 -19.30 16.43 -3.03 -0.05 -19.34 16 9 N -0.71 -12.31 5.56 -463.06 -2.57 -14.89 16 10 C 0.12 2.93 5.56 86.38 0.48 3.41 16 11 C -0.10 -2.13 4.73 30.60 0.14 -1.98 16 12 C -0.09 -2.74 2.93 -9.58 -0.03 -2.77 16 13 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 14 C -0.12 -4.27 6.53 31.99 0.21 -4.06 16 15 C 0.15 7.41 5.89 86.86 0.51 7.92 16 16 N -0.63 -33.14 3.39 -691.88 -2.35 -35.48 16 17 C -0.24 -13.73 10.27 84.03 0.86 -12.87 16 18 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 19 C -0.07 -4.06 5.49 84.86 0.47 -3.59 16 20 N -0.95 -57.41 10.09 21.65 0.22 -57.19 16 21 Si 0.98 46.27 29.55 68.60 2.03 48.30 16 22 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 23 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 24 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 25 C 0.13 5.58 6.24 86.75 0.54 6.13 16 26 C 0.50 13.47 7.40 84.82 0.63 14.10 16 27 O -0.61 -21.56 16.64 -5.51 -0.09 -21.65 16 28 C -0.29 -6.40 9.65 22.40 0.22 -6.19 16 29 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.09 0.38 8.10 -2.39 -0.02 0.36 16 31 H 0.07 0.58 8.09 -2.39 -0.02 0.56 16 32 H 0.18 0.53 8.06 -2.91 -0.02 0.50 16 33 H 0.20 0.44 8.03 -2.91 -0.02 0.42 16 34 H 0.13 1.80 7.39 -2.39 -0.02 1.78 16 35 H 0.18 0.27 8.01 -2.38 -0.02 0.25 16 36 H 0.42 3.83 8.47 -92.71 -0.79 3.05 16 37 H 0.05 1.49 7.69 -2.38 -0.02 1.47 16 38 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.08 1.68 7.93 -2.38 -0.02 1.66 16 41 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 42 H 0.07 2.38 8.05 -2.39 -0.02 2.36 16 43 H 0.07 4.09 5.88 -2.39 -0.01 4.07 16 44 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 45 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 46 H 0.03 1.22 7.68 -2.39 -0.02 1.21 16 47 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 48 H 0.14 2.99 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -90.93 393.94 2.89 -88.04 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: 0.17 Total: 9.01 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: 6.89 Total: 13.46 kcal Atomic # 7 Polarization: -111.75 SS G_CDS: -6.06 Total: -117.81 kcal Atomic # 8 Polarization: -40.85 SS G_CDS: -0.14 Total: -40.99 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -90.93 2.89 -88.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753337265.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.871 kcal (2) G-P(sol) polarization free energy of solvation -90.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds