Wall clock time and date at job start Tue Mar 31 2020 17:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35929 * 116.99959 * 2 1 4 4 C 1.38851 * 120.40439 * 0.02562 * 3 2 1 5 5 N 1.31878 * 120.99820 * 180.02562 * 4 3 2 6 6 C 1.31675 * 121.94372 * 359.97438 * 5 4 3 7 7 C 1.39526 * 120.69291 * 0.02562 * 6 5 4 8 8 C 1.47851 * 120.53451 * 179.97438 * 7 6 5 9 9 O 1.21554 * 120.00012 * 184.39584 * 8 7 6 10 10 N 1.34778 * 119.99727 * 4.39134 * 8 7 6 11 11 C 1.46502 * 119.99824 * 175.17246 * 10 8 7 12 12 C 1.53005 * 110.43679 * 302.08989 * 11 10 8 13 13 N 1.46505 * 109.46804 * 304.28062 * 12 11 10 14 14 C 1.36936 * 120.00006 * 184.98135 * 13 12 11 15 15 H 1.07995 * 119.99799 * 4.99316 * 14 13 12 16 16 C 1.38804 * 120.00060 * 184.99283 * 14 13 12 17 17 N 1.31614 * 120.00466 * 184.88290 * 16 14 13 18 18 Si 1.86806 * 119.99962 * 4.87834 * 16 14 13 19 19 H 1.48505 * 109.47052 * 94.70957 * 18 16 14 20 20 H 1.48499 * 109.47222 * 214.70560 * 18 16 14 21 21 H 1.48492 * 109.47358 * 334.71318 * 18 16 14 22 22 C 1.54889 * 110.48968 * 179.40213 * 11 10 8 23 23 C 1.54887 * 102.74806 * 279.26848 * 22 11 10 24 24 C 1.54269 * 104.19507 * 322.05387 * 23 22 11 25 25 C 1.53868 * 106.59781 * 23.61098 * 24 23 22 26 26 C 1.38845 * 120.40397 * 180.25691 * 3 2 1 27 27 C 1.50696 * 120.88170 * 0.02677 * 26 3 2 28 28 H 1.09000 * 109.47363 * 59.99796 * 1 2 3 29 29 H 1.08999 * 109.47149 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47252 * 299.99780 * 1 2 3 31 31 H 1.08002 * 119.50017 * 359.97395 * 4 3 2 32 32 H 1.08003 * 119.65641 * 179.97438 * 6 5 4 33 33 H 0.96998 * 120.00036 * 354.89766 * 10 8 7 34 34 H 1.09001 * 109.46866 * 64.27707 * 12 11 10 35 35 H 1.08990 * 109.47187 * 184.28013 * 12 11 10 36 36 H 0.96999 * 119.99448 * 4.98062 * 13 12 11 37 37 H 0.96996 * 120.00782 * 179.97438 * 17 16 14 38 38 H 1.09001 * 110.75129 * 37.57882 * 22 11 10 39 39 H 1.08997 * 110.75820 * 160.94619 * 22 11 10 40 40 H 1.09000 * 110.48198 * 203.37674 * 23 22 11 41 41 H 1.08994 * 110.49004 * 80.72977 * 23 22 11 42 42 H 1.09002 * 110.03064 * 264.33044 * 24 23 22 43 43 H 1.09000 * 110.03211 * 142.90148 * 24 23 22 44 44 H 1.09008 * 110.03539 * 240.71531 * 25 24 23 45 45 H 1.09001 * 110.03107 * 119.28485 * 25 24 23 46 46 H 1.09002 * 109.47182 * 263.19563 * 27 26 3 47 47 H 1.08993 * 109.47206 * 23.19179 * 27 26 3 48 48 H 1.09000 * 109.47167 * 143.19619 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2980 2.3810 0.0005 5 7 1.8845 3.5621 0.0000 6 6 3.1951 3.6892 -0.0005 7 6 4.0198 2.5637 -0.0011 8 6 5.4910 2.7105 -0.0022 9 8 6.1999 1.7264 -0.0834 10 7 6.0460 3.9354 0.0867 11 6 7.5006 4.0746 0.1922 12 6 8.0224 3.3175 1.4151 13 7 7.3276 3.7903 2.6151 14 6 7.7007 3.3284 3.8491 15 1 8.5580 2.6788 3.9458 16 6 6.9772 3.6952 4.9754 17 7 7.3905 3.3309 6.1706 18 14 5.4166 4.7060 4.7948 19 1 4.2407 3.7995 4.7622 20 1 5.2930 5.6357 5.9460 21 1 5.4753 5.4859 3.5325 22 6 7.8983 5.5697 0.2663 23 6 7.8549 6.0089 -1.2184 24 6 8.4116 4.7938 -1.9888 25 6 8.1864 3.5640 -1.0919 26 6 3.4320 1.2936 -0.0054 27 6 4.2809 0.0485 -0.0119 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2196 2.3226 0.0005 32 1 3.6364 4.6750 -0.0013 33 1 5.4827 4.7250 0.0768 34 1 7.8406 2.2505 1.2866 35 1 9.0927 3.4935 1.5219 36 1 6.6033 4.4306 2.5355 37 1 6.8851 3.5874 6.9578 38 1 7.1756 6.1328 0.8569 39 1 8.9031 5.6825 0.6733 40 1 8.4868 6.8829 -1.3762 41 1 6.8299 6.2178 -1.5247 42 1 9.4766 4.9278 -2.1781 43 1 7.8769 4.6721 -2.9308 44 1 9.1422 3.1011 -0.8460 45 1 7.5423 2.8453 -1.5987 46 1 4.5903 -0.1857 1.0067 47 1 3.7035 -0.7828 -0.4163 48 1 5.1630 0.2134 -0.6307 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753505273.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:05 Heat of formation + Delta-G solvation = -20.936600 kcal Electronic energy + Delta-G solvation = -30151.485854 eV Core-core repulsion = 26207.268814 eV Total energy + Delta-G solvation = -3944.217040 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.16325 -40.04092 -38.37263 -37.46905 -34.49617 -33.77781 -33.35663 -31.47003 -30.61467 -28.76726 -28.51241 -27.88866 -27.60454 -24.68338 -24.04446 -22.48283 -21.88795 -21.06750 -20.33332 -19.29974 -18.38327 -17.67625 -17.39583 -16.56088 -16.44665 -16.18982 -15.82684 -15.11454 -14.72576 -14.58991 -14.41290 -14.34531 -14.03393 -13.66547 -13.29690 -13.03846 -12.94802 -12.72843 -12.71312 -12.62116 -12.30120 -12.20380 -11.88462 -11.83957 -11.68944 -11.33433 -11.15153 -11.01400 -10.88807 -10.72148 -10.57849 -10.39201 -10.09986 -9.94501 -9.57258 -9.52253 -9.20674 -8.84369 -8.68410 -8.61140 -7.12619 -5.72413 -3.05658 0.53691 1.09744 2.79712 2.95462 3.32359 3.34788 3.40745 3.45779 3.76447 4.16725 4.35585 4.56851 4.59981 4.61505 4.66355 4.72393 4.79732 4.83612 4.92593 5.06265 5.10358 5.21774 5.39072 5.47199 5.49265 5.58316 5.60036 5.67798 5.68692 5.79970 5.85068 5.89528 5.92684 6.00875 6.10262 6.14113 6.15931 6.23404 6.34412 6.44796 6.47785 6.56186 6.82794 6.94340 7.00202 7.66093 7.69160 8.06872 8.39778 8.47187 9.27842 9.99811 10.21106 11.46470 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.008888 B = 0.005064 C = 0.003856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3149.399440 B = 5528.105111 C = 7258.908529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.305 6.305 3 C 0.064 3.936 4 C 0.036 3.964 5 N -0.458 5.458 6 C 0.099 3.901 7 C -0.149 4.149 8 C 0.572 3.428 9 O -0.513 6.513 10 N -0.707 5.707 11 C 0.166 3.834 12 C 0.150 3.850 13 N -0.752 5.752 14 C -0.234 4.234 15 H 0.089 0.911 16 C 0.003 3.997 17 N -0.935 5.935 18 Si 0.884 3.116 19 H -0.288 1.288 20 H -0.292 1.292 21 H -0.280 1.280 22 C -0.120 4.120 23 C -0.126 4.126 24 C -0.122 4.122 25 C -0.123 4.123 26 C -0.008 4.008 27 C -0.120 4.120 28 H 0.057 0.943 29 H 0.104 0.896 30 H 0.058 0.942 31 H 0.161 0.839 32 H 0.159 0.841 33 H 0.394 0.606 34 H 0.048 0.952 35 H 0.036 0.964 36 H 0.360 0.640 37 H 0.258 0.742 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.065 0.935 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.058 0.942 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.082 0.918 47 H 0.065 0.935 48 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.220 0.095 -19.401 21.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.217 6.217 3 C 0.017 3.983 4 C -0.121 4.121 5 N -0.167 5.167 6 C -0.060 4.060 7 C -0.154 4.154 8 C 0.358 3.642 9 O -0.389 6.389 10 N -0.358 5.358 11 C 0.081 3.919 12 C 0.022 3.978 13 N -0.398 5.398 14 C -0.365 4.365 15 H 0.107 0.893 16 C -0.192 4.192 17 N -0.583 5.583 18 Si 0.715 3.285 19 H -0.215 1.215 20 H -0.218 1.218 21 H -0.207 1.207 22 C -0.158 4.158 23 C -0.164 4.164 24 C -0.160 4.160 25 C -0.162 4.162 26 C -0.017 4.017 27 C -0.176 4.176 28 H 0.075 0.925 29 H 0.122 0.878 30 H 0.077 0.923 31 H 0.178 0.822 32 H 0.176 0.824 33 H 0.229 0.771 34 H 0.066 0.934 35 H 0.054 0.946 36 H 0.193 0.807 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.107 0.893 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.093 0.907 45 H 0.094 0.906 46 H 0.101 0.899 47 H 0.083 0.917 48 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -10.007 -0.221 -19.264 21.709 hybrid contribution -1.390 0.645 0.244 1.552 sum -11.398 0.424 -19.019 22.177 Atomic orbital electron populations 1.23134 0.78089 1.04439 1.01511 1.86103 1.21426 1.25535 1.88635 1.19769 0.92407 0.85998 1.00138 1.23023 1.00595 0.87137 1.01312 1.67487 1.11876 1.26009 1.11362 1.22790 0.88821 0.98068 0.96347 1.20807 0.95250 0.93718 1.05648 1.17704 0.86322 0.83614 0.76569 1.90686 1.62608 1.37179 1.48447 1.45833 1.07927 1.07448 1.74613 1.21507 0.78574 0.96005 0.95846 1.21047 0.95165 0.97520 0.84094 1.42667 1.41849 1.52740 1.02503 1.19060 1.10312 1.24579 0.82503 0.89311 1.24651 0.98688 1.00656 0.95202 1.69698 1.40470 1.51178 0.96993 0.86552 0.85339 0.80143 0.76437 1.21461 1.21816 1.20706 1.22749 1.03202 0.93706 0.96121 1.22412 1.00794 0.97815 0.95332 1.22136 1.00740 0.94800 0.98336 1.22442 1.01240 0.97625 0.94889 1.19875 0.90737 0.96059 0.95005 1.21026 0.99788 0.92205 1.04570 0.92475 0.87801 0.92331 0.82229 0.82419 0.77146 0.93420 0.94570 0.80676 0.93207 0.90969 0.89264 0.91606 0.91985 0.91886 0.92312 0.90671 0.90633 0.89921 0.91659 0.87564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.82 101.05 0.99 1.15 16 2 O -0.30 -3.54 9.56 -19.52 -0.19 -3.73 16 3 C 0.06 0.85 6.68 -39.13 -0.26 0.59 16 4 C 0.04 0.45 10.21 -17.30 -0.18 0.27 16 5 N -0.46 -6.35 10.34 -12.80 -0.13 -6.48 16 6 C 0.10 1.36 10.71 -17.14 -0.18 1.18 16 7 C -0.15 -2.27 5.89 -104.84 -0.62 -2.89 16 8 C 0.57 9.33 6.99 -12.33 -0.09 9.24 16 9 O -0.51 -9.41 10.29 5.32 0.05 -9.35 16 10 N -0.71 -10.30 4.53 -47.00 -0.21 -10.51 16 11 C 0.17 2.51 0.40 -130.15 -0.05 2.46 16 12 C 0.15 2.99 4.78 -4.04 -0.02 2.97 16 13 N -0.75 -17.94 5.09 -59.91 -0.30 -18.25 16 14 C -0.23 -6.77 10.47 -15.06 -0.16 -6.93 16 15 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 16 C 0.00 0.10 5.50 -17.44 -0.10 0.00 16 17 N -0.93 -29.94 13.97 55.49 0.78 -29.16 16 18 Si 0.88 22.73 28.02 -169.99 -4.76 17.97 16 19 H -0.29 -7.56 7.11 56.52 0.40 -7.15 16 20 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 21 H -0.28 -6.56 6.14 56.52 0.35 -6.21 16 22 C -0.12 -1.58 5.62 -24.74 -0.14 -1.72 16 23 C -0.13 -1.30 6.79 -25.07 -0.17 -1.47 16 24 C -0.12 -1.30 6.80 -25.61 -0.17 -1.47 16 25 C -0.12 -1.63 5.67 -25.61 -0.15 -1.78 16 26 C -0.01 -0.12 5.97 -103.76 -0.62 -0.74 16 27 C -0.12 -1.76 8.85 36.00 0.32 -1.44 16 28 H 0.06 0.31 7.67 -51.93 -0.40 -0.09 16 29 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.37 7.67 -51.93 -0.40 -0.03 16 31 H 0.16 1.43 6.30 -52.49 -0.33 1.10 16 32 H 0.16 1.75 6.43 -52.48 -0.34 1.41 16 33 H 0.39 4.80 6.57 -40.82 -0.27 4.53 16 34 H 0.05 1.07 6.40 -51.93 -0.33 0.73 16 35 H 0.04 0.73 8.09 -51.93 -0.42 0.31 16 36 H 0.36 8.33 4.99 -40.82 -0.20 8.13 16 37 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 38 H 0.07 0.98 8.09 -51.93 -0.42 0.56 16 39 H 0.09 1.22 8.02 -51.93 -0.42 0.81 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.07 1.01 7.84 -51.92 -0.41 0.60 16 45 H 0.07 1.08 6.56 -51.93 -0.34 0.74 16 46 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 47 H 0.06 0.84 7.43 -51.93 -0.39 0.45 16 48 H 0.11 1.64 5.71 -51.93 -0.30 1.34 16 LS Contribution 376.29 15.07 5.67 5.67 Total: -1.00 -34.96 376.29 -7.79 -42.75 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -7.11 Total: 11.65 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: -1.59 Total: -0.55 kcal Atomic # 7 Polarization: -64.53 SS G_CDS: 0.13 Total: -64.40 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: -0.13 Total: -13.08 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -4.76 Total: 17.97 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.96 -7.79 -42.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753505273.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.812 kcal (2) G-P(sol) polarization free energy of solvation -34.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds