Wall clock time and date at job start Tue Mar 31 2020 17:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52991 * 109.45933 * 2 1 4 4 N 1.46506 * 109.47260 * 60.02814 * 3 2 1 5 5 C 1.34772 * 119.99895 * 179.97438 * 4 3 2 6 6 O 1.21585 * 120.00149 * 0.02562 * 5 4 3 7 7 C 1.47518 * 119.99638 * 179.97438 * 5 4 3 8 8 C 1.36829 * 126.94092 * 180.02562 * 7 5 4 9 9 C 1.41254 * 103.84403 * 179.97438 * 8 7 5 10 10 C 1.50702 * 126.70490 * 180.02562 * 9 8 7 11 11 C 1.52996 * 117.49582 * 343.72582 * 10 9 8 12 12 C 1.52998 * 117.49641 * 275.06786 * 10 9 8 13 13 N 1.30133 * 106.59246 * 359.97438 * 9 8 7 14 14 O 1.20883 * 111.97922 * 0.02562 * 13 9 8 15 15 C 1.53037 * 109.44884 * 119.97000 * 2 1 3 16 16 C 1.53194 * 109.31611 * 58.64514 * 15 2 1 17 17 N 1.46927 * 108.77116 * 54.63628 * 16 15 2 18 18 C 1.36932 * 120.62864 * 126.41590 * 17 16 15 19 19 H 1.08003 * 120.00271 * 332.60706 * 18 17 16 20 20 C 1.38811 * 120.00207 * 152.60379 * 18 17 16 21 21 N 1.31625 * 120.00006 * 159.34102 * 20 18 17 22 22 Si 1.86802 * 119.99949 * 339.34592 * 20 18 17 23 23 H 1.48498 * 109.47311 * 92.93903 * 22 20 18 24 24 H 1.48502 * 109.46886 * 212.93862 * 22 20 18 25 25 H 1.48498 * 109.47027 * 332.93892 * 22 20 18 26 26 C 1.46922 * 118.74184 * 306.38809 * 17 16 15 27 27 C 1.53041 * 109.45717 * 240.02667 * 2 1 3 28 28 H 1.08993 * 109.46897 * 60.00183 * 1 2 3 29 29 H 1.09001 * 109.46724 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46850 * 299.99673 * 1 2 3 31 31 H 1.09003 * 109.47701 * 300.02446 * 3 2 1 32 32 H 1.09006 * 109.47093 * 180.02562 * 3 2 1 33 33 H 0.96990 * 119.99539 * 0.02562 * 4 3 2 34 34 H 1.08002 * 128.07613 * 359.97438 * 8 7 5 35 35 H 1.09000 * 115.55169 * 129.39974 * 10 9 8 36 36 H 1.08998 * 117.50138 * 0.02562 * 11 10 9 37 37 H 1.09003 * 117.49794 * 145.02244 * 11 10 9 38 38 H 1.08999 * 117.50382 * 214.98034 * 12 10 9 39 39 H 1.08999 * 117.50265 * 359.97438 * 12 10 9 40 40 H 1.08999 * 109.49794 * 178.59820 * 15 2 1 41 41 H 1.09003 * 109.49545 * 298.69086 * 15 2 1 42 42 H 1.09002 * 109.58728 * 294.84993 * 16 15 2 43 43 H 1.08997 * 109.58702 * 174.42068 * 16 15 2 44 44 H 0.97002 * 119.99751 * 180.02562 * 21 20 18 45 45 H 1.09004 * 109.58879 * 293.82655 * 26 17 16 46 46 H 1.08994 * 109.70542 * 173.46792 * 26 17 16 47 47 H 1.09000 * 109.49499 * 61.31463 * 27 2 1 48 48 H 1.09006 * 109.49649 * 181.40617 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0397 1.4425 0.0000 4 7 1.5518 2.1329 1.1965 5 6 1.8777 3.4231 1.4101 6 8 2.5762 4.0142 0.6095 7 6 1.3859 4.1183 2.6146 8 6 1.6271 5.4173 2.9705 9 6 0.9323 5.5680 4.1910 10 6 0.8547 6.8139 5.0354 11 6 1.8780 7.9177 4.7615 12 6 1.9909 7.0661 6.0284 13 7 0.3714 4.4212 4.4434 14 8 0.6082 3.6032 3.5855 15 6 2.0396 -0.7209 1.2501 16 6 1.4990 -2.1542 1.2643 17 7 1.8620 -2.8089 0.0000 18 6 2.5253 -4.0069 0.0001 19 1 3.1631 -4.2710 0.8308 20 6 2.3779 -4.8820 -1.0673 21 7 3.2825 -5.8131 -1.2846 22 14 0.8960 -4.7379 -2.1953 23 1 1.2377 -3.8738 -3.3537 24 1 0.5107 -6.0873 -2.6811 25 1 -0.2385 -4.1383 -1.4480 26 6 1.4993 -2.1542 -1.2642 27 6 2.0399 -0.7209 -1.2500 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6760 1.9565 -0.8898 32 1 3.1298 1.4427 -0.0005 33 1 0.9949 1.6612 1.8353 34 1 2.2122 6.1551 2.4415 35 1 -0.1489 7.1200 5.3306 36 1 2.6072 7.7431 3.9703 37 1 1.5478 8.9501 4.8769 38 1 1.7350 7.5385 6.9768 39 1 2.7944 6.3308 6.0714 40 1 3.1293 -0.7432 1.2384 41 1 1.6956 -0.1934 2.1398 42 1 0.4141 -2.1345 1.3673 43 1 1.9375 -2.7018 2.0985 44 1 3.1797 -6.4244 -2.0308 45 1 0.4143 -2.1346 -1.3675 46 1 1.9359 -2.7012 -2.0998 47 1 1.6960 -0.1935 -2.1398 48 1 3.1296 -0.7432 -1.2382 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754721000.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:51 Heat of formation + Delta-G solvation = 54.145461 kcal Electronic energy + Delta-G solvation = -28708.070248 eV Core-core repulsion = 24767.109010 eV Total energy + Delta-G solvation = -3940.961238 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -46.15035 -41.23167 -40.00722 -38.57337 -36.83382 -34.85622 -34.37405 -33.43002 -32.80266 -31.91008 -28.96895 -28.14930 -26.01396 -25.75596 -24.92786 -24.12443 -23.30600 -22.90773 -22.55668 -21.03788 -19.80647 -19.46330 -18.90811 -18.29528 -17.52090 -17.28929 -17.04971 -16.49373 -16.43401 -15.93589 -15.59076 -15.46152 -15.39545 -15.17774 -14.93208 -14.77466 -14.54371 -14.07360 -13.93183 -13.59110 -13.21882 -13.18709 -12.93538 -12.85800 -12.42864 -12.40382 -12.24740 -12.22488 -12.17707 -12.09613 -11.74736 -11.54913 -11.52347 -11.41694 -11.16607 -11.09992 -10.99711 -10.74055 -10.64511 -10.22512 -8.86498 -8.14343 -5.44806 -0.34496 0.88907 1.31253 1.42401 1.44785 1.51600 1.82885 2.10574 2.43554 2.61875 2.98340 3.08610 3.39323 3.43393 3.69435 3.77227 3.79895 3.84086 3.86690 3.94201 4.02998 4.19461 4.30597 4.38779 4.40317 4.52112 4.57663 4.71061 4.72072 4.75583 4.76875 4.79933 4.84643 4.95626 4.97812 5.04408 5.06182 5.07283 5.14666 5.20424 5.23252 5.29212 5.34642 5.39723 5.63195 5.90077 6.15256 6.20277 6.82007 6.96200 6.97917 7.67010 8.06941 9.05766 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.031031 B = 0.002204 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.113785 B =12701.886262 C =12924.625585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.056 4.056 3 C 0.138 3.862 4 N -0.695 5.695 5 C 0.608 3.392 6 O -0.545 6.545 7 C -0.088 4.088 8 C -0.144 4.144 9 C 0.044 3.956 10 C -0.109 4.109 11 C -0.149 4.149 12 C -0.162 4.162 13 N -0.360 5.360 14 O 0.116 5.884 15 C -0.116 4.116 16 C 0.142 3.858 17 N -0.619 5.619 18 C -0.244 4.244 19 H 0.048 0.952 20 C -0.040 4.040 21 N -0.960 5.960 22 Si 0.949 3.051 23 H -0.275 1.275 24 H -0.315 1.315 25 H -0.258 1.258 26 C 0.121 3.879 27 C -0.116 4.116 28 H 0.066 0.934 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.417 0.583 34 H 0.198 0.802 35 H 0.133 0.867 36 H 0.103 0.897 37 H 0.126 0.874 38 H 0.120 0.880 39 H 0.088 0.912 40 H 0.050 0.950 41 H 0.085 0.915 42 H 0.043 0.957 43 H 0.048 0.952 44 H 0.260 0.740 45 H 0.040 0.960 46 H 0.044 0.956 47 H 0.084 0.916 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.184 29.424 10.437 32.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.056 4.056 3 C 0.015 3.985 4 N -0.347 5.347 5 C 0.392 3.608 6 O -0.423 6.423 7 C -0.154 4.154 8 C -0.167 4.167 9 C -0.114 4.114 10 C -0.128 4.128 11 C -0.186 4.186 12 C -0.200 4.200 13 N -0.061 5.061 14 O 0.044 5.956 15 C -0.155 4.155 16 C 0.018 3.982 17 N -0.344 5.344 18 C -0.374 4.374 19 H 0.066 0.934 20 C -0.234 4.234 21 N -0.607 5.607 22 Si 0.778 3.222 23 H -0.201 1.201 24 H -0.244 1.244 25 H -0.182 1.182 26 C -0.003 4.003 27 C -0.155 4.155 28 H 0.085 0.915 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.255 0.745 34 H 0.216 0.784 35 H 0.151 0.849 36 H 0.121 0.879 37 H 0.144 0.856 38 H 0.138 0.862 39 H 0.107 0.893 40 H 0.068 0.932 41 H 0.103 0.897 42 H 0.061 0.939 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.057 0.943 46 H 0.062 0.938 47 H 0.102 0.898 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.429 29.236 10.779 32.033 hybrid contribution -0.023 -0.831 -0.899 1.225 sum -7.452 28.405 9.880 30.984 Atomic orbital electron populations 1.21972 0.93099 1.02291 1.02841 1.20581 0.96873 0.92445 0.95737 1.21480 0.99137 0.91027 0.86872 1.45897 1.52184 1.10548 1.26059 1.16523 0.79944 0.81959 0.82399 1.90871 1.39017 1.66966 1.45432 1.24144 1.01321 0.95553 0.94407 1.23060 1.01824 0.95884 0.95883 1.23102 0.97702 0.94767 0.95796 1.20308 0.98329 0.91591 1.02554 1.23209 0.99572 0.96368 0.99423 1.23137 0.98481 1.02954 0.95418 1.73710 1.20387 1.01281 1.10734 1.84990 1.51391 1.35102 1.24146 1.21977 1.00285 0.95918 0.97324 1.21141 0.97588 0.92410 0.87103 1.44458 1.67426 1.20692 1.01779 1.18858 1.18884 0.93919 1.05750 0.93400 1.25940 1.00464 0.96444 1.00601 1.69984 1.35498 1.23070 1.32103 0.85877 0.82067 0.75081 0.79190 1.20139 1.24428 1.18204 1.21398 0.97431 0.93301 0.88210 1.21911 1.00567 0.95327 0.97743 0.91479 0.92877 0.90937 0.90083 0.91537 0.74497 0.78449 0.84882 0.87862 0.85612 0.86157 0.89306 0.93159 0.89651 0.93920 0.93312 0.93121 0.94265 0.93825 0.89788 0.92710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 7.54 71.98 0.54 -2.53 16 2 C -0.06 -1.35 0.53 -52.16 -0.03 -1.37 16 3 C 0.14 2.92 4.56 86.38 0.39 3.31 16 4 N -0.70 -13.06 4.94 -466.29 -2.31 -15.37 16 5 C 0.61 13.19 7.82 86.69 0.68 13.86 16 6 O -0.54 -15.03 16.91 -3.98 -0.07 -15.10 16 7 C -0.09 -1.72 7.29 24.39 0.18 -1.54 16 8 C -0.14 -2.46 10.26 22.68 0.23 -2.23 16 9 C 0.04 0.76 6.94 43.55 0.30 1.06 16 10 C -0.11 -1.27 6.33 -11.54 -0.07 -1.35 16 11 C -0.15 -1.06 10.05 30.62 0.31 -0.75 16 12 C -0.16 -1.48 10.24 30.62 0.31 -1.16 16 13 N -0.36 -7.61 12.04 -48.87 -0.59 -8.20 16 14 O 0.12 2.33 11.04 65.91 0.73 3.06 16 15 C -0.12 -3.15 4.75 30.67 0.15 -3.00 16 16 C 0.14 5.04 6.05 86.36 0.52 5.56 16 17 N -0.62 -27.86 2.77 -699.10 -1.94 -29.80 16 18 C -0.24 -13.74 10.03 84.03 0.84 -12.90 16 19 H 0.05 2.97 8.06 -2.91 -0.02 2.95 16 20 C -0.04 -2.35 5.23 84.86 0.44 -1.91 16 21 N -0.96 -60.73 13.97 21.65 0.30 -60.43 16 22 Si 0.95 46.27 24.35 68.60 1.67 47.94 16 23 H -0.27 -12.63 6.62 99.48 0.66 -11.97 16 24 H -0.31 -15.79 7.11 99.48 0.71 -15.09 16 25 H -0.26 -11.83 6.63 99.48 0.66 -11.17 16 26 C 0.12 4.82 3.73 86.36 0.32 5.14 16 27 C -0.12 -3.52 4.91 30.67 0.15 -3.37 16 28 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.05 1.37 4.98 -2.39 -0.01 1.36 16 30 H 0.07 1.20 6.86 -2.39 -0.02 1.19 16 31 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 33 H 0.42 6.45 5.98 -92.72 -0.55 5.89 16 34 H 0.20 2.61 7.62 -2.91 -0.02 2.58 16 35 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.10 0.72 7.33 -2.39 -0.02 0.70 16 37 H 0.13 0.43 8.14 -2.39 -0.02 0.41 16 38 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.09 1.77 6.82 -2.39 -0.02 1.75 16 42 H 0.04 1.40 6.69 -2.39 -0.02 1.38 16 43 H 0.05 1.83 7.93 -2.39 -0.02 1.81 16 44 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 45 H 0.04 1.49 5.62 -2.39 -0.01 1.47 16 46 H 0.04 1.98 4.50 -2.39 -0.01 1.97 16 47 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 48 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 Total: -1.00 -71.53 374.76 3.42 -68.11 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: 0.34 Total: 12.94 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: 5.28 Total: -3.17 kcal Atomic # 7 Polarization: -109.27 SS G_CDS: -4.53 Total: -113.79 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: 0.66 Total: -12.04 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 1.67 Total: 47.94 kcal Total: -71.53 3.42 -68.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754721000.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.259 kcal (2) G-P(sol) polarization free energy of solvation -71.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds