Wall clock time and date at job start Tue Mar 31 2020 17:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38351 * 119.46263 * 2 1 4 4 C 1.38361 * 119.30683 * 179.69922 * 3 2 1 5 5 C 1.50696 * 120.86005 * 180.26018 * 4 3 2 6 6 C 1.40024 * 118.28577 * 0.28083 * 4 3 2 7 7 C 1.47837 * 120.55983 * 180.02562 * 6 4 3 8 8 O 1.21549 * 120.00274 * 90.00471 * 7 6 4 9 9 N 1.34776 * 120.00124 * 269.99973 * 7 6 4 10 10 C 1.46495 * 120.00235 * 179.97438 * 9 7 6 11 11 C 1.53005 * 109.47492 * 180.02562 * 10 9 7 12 12 O 1.42898 * 110.63948 * 66.68414 * 11 10 9 13 13 C 1.55150 * 110.72111 * 190.02424 * 11 10 9 14 14 C 1.54910 * 101.57936 * 153.86509 * 13 11 10 15 15 N 1.47422 * 104.83514 * 322.98763 * 14 13 11 16 16 C 1.36938 * 125.65132 * 204.16556 * 15 14 13 17 17 H 1.08001 * 120.00026 * 179.97438 * 16 15 14 18 18 C 1.38811 * 119.99914 * 359.95959 * 16 15 14 19 19 N 1.31619 * 120.00209 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 119.99977 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47116 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47388 * 119.99928 * 20 18 16 23 23 H 1.48498 * 109.47094 * 240.00035 * 20 18 16 24 24 C 1.47029 * 108.69960 * 24.12880 * 15 14 13 25 25 C 1.39527 * 118.88392 * 359.97438 * 6 4 3 26 26 C 1.50692 * 119.71895 * 179.97438 * 25 6 4 27 27 N 1.31692 * 120.56268 * 359.97438 * 25 6 4 28 28 H 1.09005 * 109.47110 * 89.99248 * 1 2 3 29 29 H 1.08999 * 109.47286 * 209.99633 * 1 2 3 30 30 H 1.08998 * 109.47172 * 330.00198 * 1 2 3 31 31 H 1.08002 * 120.34977 * 359.97438 * 3 2 1 32 32 H 1.08994 * 109.47511 * 89.99721 * 5 4 3 33 33 H 1.08999 * 109.47193 * 210.00169 * 5 4 3 34 34 H 1.09006 * 109.46963 * 329.99952 * 5 4 3 35 35 H 0.97000 * 120.00090 * 0.02562 * 9 7 6 36 36 H 1.09001 * 109.47318 * 300.00105 * 10 9 7 37 37 H 1.09004 * 109.47253 * 59.99981 * 10 9 7 38 38 H 0.96700 * 114.00284 * 300.70298 * 12 11 10 39 39 H 1.08996 * 111.00613 * 271.93355 * 13 11 10 40 40 H 1.08999 * 111.00519 * 35.78959 * 13 11 10 41 41 H 1.09007 * 110.36573 * 204.15262 * 14 13 11 42 42 H 1.08997 * 110.37271 * 81.82990 * 14 13 11 43 43 H 0.96993 * 120.00459 * 180.02562 * 19 18 16 44 44 H 1.08992 * 109.88248 * 239.52366 * 24 15 14 45 45 H 1.09004 * 109.87802 * 118.35670 * 24 15 14 46 46 H 1.09001 * 109.46986 * 89.99973 * 26 25 6 47 47 H 1.09003 * 109.47256 * 209.99827 * 26 25 6 48 48 H 1.08999 * 109.47392 * 330.00649 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1874 1.2046 0.0000 4 6 3.5710 1.2008 0.0063 5 6 4.3475 2.4923 0.0124 6 6 4.2312 -0.0340 0.0065 7 6 5.7082 -0.0967 0.0137 8 8 6.3102 -0.1252 1.0693 9 7 6.3873 -0.1223 -1.1502 10 6 7.8509 -0.1838 -1.1431 11 6 8.3678 -0.2013 -2.5831 12 8 8.0918 1.0414 -3.2324 13 6 9.8862 -0.5178 -2.6176 14 6 10.0411 -1.1457 -4.0252 15 7 8.8108 -1.9331 -4.2248 16 6 8.6770 -3.0051 -5.0662 17 1 7.7294 -3.5177 -5.1412 18 6 9.7593 -3.4329 -5.8228 19 7 10.9140 -2.8078 -5.7320 20 14 9.5770 -4.8957 -6.9700 21 1 8.1894 -5.4186 -6.8888 22 1 9.8657 -4.4711 -8.3635 23 1 10.5311 -5.9608 -6.5695 24 6 7.7515 -1.3771 -3.3700 25 6 3.4716 -1.2044 0.0008 26 6 4.1626 -2.5435 0.0003 27 7 2.1558 -1.1487 -0.0040 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6443 2.1381 -0.0004 32 1 4.5299 2.8018 1.0415 33 1 5.2997 2.3462 -0.4974 34 1 3.7742 3.2633 -0.5026 35 1 5.9070 -0.0992 -1.9926 36 1 8.2488 0.6889 -0.6253 37 1 8.1741 -1.0895 -0.6297 38 1 7.1517 1.2646 -3.2713 39 1 10.4774 0.3936 -2.5292 40 1 10.1541 -1.2324 -1.8393 41 1 10.9162 -1.7949 -4.0568 42 1 10.1191 -0.3654 -4.7823 43 1 11.6702 -3.1064 -6.2609 44 1 7.3951 -2.1400 -2.6780 45 1 6.9273 -1.0189 -3.9869 46 1 4.3253 -2.8688 1.0279 47 1 3.5403 -3.2733 -0.5176 48 1 5.1221 -2.4571 -0.5095 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754756605.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:04 Heat of formation + Delta-G solvation = -32.149827 kcal Electronic energy + Delta-G solvation = -29247.757956 eV Core-core repulsion = 25303.054674 eV Total energy + Delta-G solvation = -3944.703282 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.12433 -39.57974 -38.38325 -35.17846 -34.55554 -34.28989 -33.94303 -32.11121 -29.82677 -29.38860 -28.57276 -28.04167 -27.31109 -25.70342 -23.78876 -22.56965 -21.47758 -20.83299 -20.06407 -19.95379 -18.23714 -17.35592 -16.99518 -16.39209 -16.04495 -15.31815 -15.09550 -15.02435 -14.78286 -14.60295 -14.11035 -13.88061 -13.65777 -13.61673 -13.49368 -13.33527 -13.19122 -13.03975 -12.96985 -12.54973 -12.31668 -12.27575 -12.14204 -12.02797 -11.95879 -11.62588 -11.07447 -10.91567 -10.83066 -10.53149 -10.31912 -10.14640 -9.99053 -9.78479 -9.74760 -9.63717 -9.45504 -9.19489 -9.06140 -8.68773 -6.89615 -5.69758 -3.12230 0.60326 0.90157 2.39415 2.97179 3.34084 3.37276 3.42618 3.45241 3.86548 4.21922 4.25925 4.39362 4.42732 4.50570 4.73475 4.81973 4.98890 5.04553 5.10500 5.13627 5.20188 5.24067 5.25068 5.33382 5.36700 5.44157 5.45563 5.52895 5.58217 5.69376 5.80198 5.84131 5.87123 5.88908 5.93206 6.18383 6.22651 6.35063 6.36153 6.45537 6.54871 6.57844 7.27349 7.52713 7.57622 7.67901 7.80396 7.87829 8.00458 8.30667 9.16771 9.77158 10.41082 11.34111 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014872 B = 0.002946 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.314026 B = 9502.815814 C =10538.326886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.148 3.852 3 C -0.185 4.185 4 C 0.001 3.999 5 C -0.123 4.123 6 C -0.190 4.190 7 C 0.573 3.427 8 O -0.528 6.528 9 N -0.719 5.719 10 C 0.102 3.898 11 C 0.105 3.895 12 O -0.543 6.543 13 C -0.128 4.128 14 C 0.156 3.844 15 N -0.599 5.599 16 C -0.225 4.225 17 H 0.077 0.923 18 C -0.010 4.010 19 N -0.920 5.920 20 Si 0.915 3.085 21 H -0.280 1.280 22 H -0.290 1.290 23 H -0.290 1.290 24 C 0.116 3.884 25 C 0.179 3.821 26 C -0.113 4.113 27 N -0.488 5.488 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.140 0.860 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.401 0.599 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.364 0.636 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.108 0.892 42 H 0.018 0.982 43 H 0.253 0.747 44 H 0.031 0.969 45 H 0.022 0.978 46 H 0.085 0.915 47 H 0.085 0.915 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.059 9.794 12.154 23.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.011 3.989 3 C -0.204 4.204 4 C -0.008 4.008 5 C -0.180 4.180 6 C -0.195 4.195 7 C 0.358 3.642 8 O -0.404 6.404 9 N -0.371 5.371 10 C -0.021 4.021 11 C 0.064 3.936 12 O -0.347 6.347 13 C -0.167 4.167 14 C 0.031 3.969 15 N -0.325 5.325 16 C -0.353 4.353 17 H 0.095 0.905 18 C -0.205 4.205 19 N -0.568 5.568 20 Si 0.746 3.254 21 H -0.205 1.205 22 H -0.217 1.217 23 H -0.217 1.217 24 C -0.011 4.011 25 C 0.040 3.960 26 C -0.170 4.170 27 N -0.199 5.199 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.157 0.843 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.236 0.764 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.210 0.790 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.126 0.874 42 H 0.036 0.964 43 H 0.063 0.937 44 H 0.049 0.951 45 H 0.040 0.960 46 H 0.104 0.896 47 H 0.104 0.896 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -16.286 8.875 12.689 22.473 hybrid contribution -0.552 0.121 -0.978 1.130 sum -16.839 8.996 11.711 22.397 Atomic orbital electron populations 1.20759 0.88477 1.03659 1.03390 1.21435 0.97171 0.88082 0.92230 1.21738 0.93604 0.99521 1.05585 1.20312 0.93833 0.94359 0.92247 1.20923 1.00053 0.93367 1.03632 1.20643 0.94354 0.94712 1.09812 1.17959 0.86222 0.75979 0.84077 1.90813 1.69647 1.49096 1.30874 1.46098 1.07962 1.74638 1.08391 1.22174 0.78463 1.03349 0.98127 1.22564 0.98431 0.84296 0.88324 1.86630 1.28842 1.38558 1.80663 1.23056 0.90742 1.00536 1.02328 1.21947 0.92440 0.93858 0.88633 1.44416 1.06570 1.33666 1.47875 1.19100 0.96755 1.03958 1.15523 0.90465 1.24797 0.95833 0.99664 1.00229 1.69795 1.01415 1.41792 1.43839 0.85991 0.77314 0.81799 0.80333 1.20517 1.21701 1.21658 1.21914 0.92683 0.93268 0.93191 1.21325 0.88873 0.94635 0.91168 1.20851 1.00100 0.92176 1.03881 1.67393 1.08792 1.29116 1.14603 0.90021 0.90229 0.90521 0.84258 0.89800 0.90760 0.90262 0.76425 0.90487 0.90010 0.78996 0.91034 0.90528 0.87390 0.96369 0.93663 0.95142 0.96000 0.89606 0.89566 0.90344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.16 36.00 0.37 -0.31 16 2 C 0.15 1.46 6.78 -82.51 -0.56 0.90 16 3 C -0.18 -1.63 9.43 -39.49 -0.37 -2.00 16 4 C 0.00 0.01 5.95 -103.91 -0.62 -0.61 16 5 C -0.12 -1.01 9.69 36.00 0.35 -0.66 16 6 C -0.19 -2.32 5.65 -104.82 -0.59 -2.91 16 7 C 0.57 7.74 4.35 -12.33 -0.05 7.68 16 8 O -0.53 -8.93 17.10 5.32 0.09 -8.84 16 9 N -0.72 -8.80 5.13 -61.25 -0.31 -9.11 16 10 C 0.10 1.43 4.80 -4.04 -0.02 1.41 16 11 C 0.11 1.74 0.93 -88.79 -0.08 1.65 16 12 O -0.54 -8.69 13.10 -35.23 -0.46 -9.15 16 13 C -0.13 -2.38 6.26 -24.59 -0.15 -2.54 16 14 C 0.16 3.77 5.88 -2.53 -0.01 3.75 16 15 N -0.60 -15.03 3.39 -170.07 -0.58 -15.61 16 16 C -0.23 -6.19 10.27 -15.06 -0.15 -6.34 16 17 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 18 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 19 N -0.92 -26.61 10.09 55.49 0.56 -26.05 16 20 Si 0.92 21.87 29.55 -169.99 -5.02 16.84 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 C 0.12 2.27 5.76 -3.06 -0.02 2.26 16 25 C 0.18 2.22 6.82 -82.18 -0.56 1.66 16 26 C -0.11 -1.28 9.79 36.00 0.35 -0.93 16 27 N -0.49 -5.93 10.17 -5.42 -0.06 -5.99 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.33 8.07 -51.93 -0.42 -0.08 16 31 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.66 7.19 -51.93 -0.37 0.29 16 34 H 0.08 0.47 8.10 -51.93 -0.42 0.05 16 35 H 0.40 4.34 7.46 -40.82 -0.30 4.04 16 36 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.08 1.22 8.03 -51.93 -0.42 0.80 16 38 H 0.36 4.32 8.44 45.56 0.38 4.70 16 39 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.08 1.35 7.96 -51.93 -0.41 0.94 16 41 H 0.11 2.91 5.87 -51.93 -0.31 2.61 16 42 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 44 H 0.03 0.59 7.82 -51.93 -0.41 0.18 16 45 H 0.02 0.42 8.07 -51.93 -0.42 0.00 16 46 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 48 H 0.08 0.93 7.07 -51.93 -0.37 0.56 16 LS Contribution 391.30 15.07 5.90 5.90 Total: -1.00 -33.90 391.30 -8.92 -42.83 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -6.81 Total: 6.53 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: -2.23 Total: 2.65 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: -0.39 Total: -56.76 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -0.37 Total: -17.99 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.90 -8.92 -42.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754756605.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.676 kcal (2) G-P(sol) polarization free energy of solvation -33.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds