Wall clock time and date at job start Tue Mar 31 2020 17:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38351 * 119.46263 * 2 1 4 4 C 1.38361 * 119.30683 * 179.69922 * 3 2 1 5 5 C 1.50696 * 120.86005 * 180.26018 * 4 3 2 6 6 C 1.40024 * 118.28577 * 0.28083 * 4 3 2 7 7 C 1.47837 * 120.55983 * 180.02562 * 6 4 3 8 8 O 1.21549 * 120.00274 * 90.00471 * 7 6 4 9 9 N 1.34776 * 120.00124 * 269.99973 * 7 6 4 10 10 C 1.46495 * 120.00235 * 179.97438 * 9 7 6 11 11 C 1.53005 * 109.47492 * 180.02562 * 10 9 7 12 12 O 1.42898 * 110.63948 * 66.68414 * 11 10 9 13 13 C 1.55150 * 110.72111 * 190.02424 * 11 10 9 14 14 C 1.54910 * 101.57936 * 153.86509 * 13 11 10 15 15 N 1.47422 * 104.83514 * 322.98763 * 14 13 11 16 16 C 1.36938 * 125.65132 * 204.16556 * 15 14 13 17 17 H 1.08001 * 120.00026 * 179.97438 * 16 15 14 18 18 C 1.38811 * 119.99914 * 359.95959 * 16 15 14 19 19 N 1.31619 * 120.00209 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 119.99977 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47116 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47388 * 119.99928 * 20 18 16 23 23 H 1.48498 * 109.47094 * 240.00035 * 20 18 16 24 24 C 1.47029 * 108.69960 * 24.12880 * 15 14 13 25 25 C 1.39527 * 118.88392 * 359.97438 * 6 4 3 26 26 C 1.50692 * 119.71895 * 179.97438 * 25 6 4 27 27 N 1.31692 * 120.56268 * 359.97438 * 25 6 4 28 28 H 1.09005 * 109.47110 * 89.99248 * 1 2 3 29 29 H 1.08999 * 109.47286 * 209.99633 * 1 2 3 30 30 H 1.08998 * 109.47172 * 330.00198 * 1 2 3 31 31 H 1.08002 * 120.34977 * 359.97438 * 3 2 1 32 32 H 1.08994 * 109.47511 * 89.99721 * 5 4 3 33 33 H 1.08999 * 109.47193 * 210.00169 * 5 4 3 34 34 H 1.09006 * 109.46963 * 329.99952 * 5 4 3 35 35 H 0.97000 * 120.00090 * 0.02562 * 9 7 6 36 36 H 1.09001 * 109.47318 * 300.00105 * 10 9 7 37 37 H 1.09004 * 109.47253 * 59.99981 * 10 9 7 38 38 H 0.96700 * 114.00284 * 300.70298 * 12 11 10 39 39 H 1.08996 * 111.00613 * 271.93355 * 13 11 10 40 40 H 1.08999 * 111.00519 * 35.78959 * 13 11 10 41 41 H 1.09007 * 110.36573 * 204.15262 * 14 13 11 42 42 H 1.08997 * 110.37271 * 81.82990 * 14 13 11 43 43 H 0.96993 * 120.00459 * 180.02562 * 19 18 16 44 44 H 1.08992 * 109.88248 * 239.52366 * 24 15 14 45 45 H 1.09004 * 109.87802 * 118.35670 * 24 15 14 46 46 H 1.09001 * 109.46986 * 89.99973 * 26 25 6 47 47 H 1.09003 * 109.47256 * 209.99827 * 26 25 6 48 48 H 1.08999 * 109.47392 * 330.00649 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1874 1.2046 0.0000 4 6 3.5710 1.2008 0.0063 5 6 4.3475 2.4923 0.0124 6 6 4.2312 -0.0340 0.0065 7 6 5.7082 -0.0967 0.0137 8 8 6.3102 -0.1252 1.0693 9 7 6.3873 -0.1223 -1.1502 10 6 7.8509 -0.1838 -1.1431 11 6 8.3678 -0.2013 -2.5831 12 8 8.0918 1.0414 -3.2324 13 6 9.8862 -0.5178 -2.6176 14 6 10.0411 -1.1457 -4.0252 15 7 8.8108 -1.9331 -4.2248 16 6 8.6770 -3.0051 -5.0662 17 1 7.7294 -3.5177 -5.1412 18 6 9.7593 -3.4329 -5.8228 19 7 10.9140 -2.8078 -5.7320 20 14 9.5770 -4.8957 -6.9700 21 1 8.1894 -5.4186 -6.8888 22 1 9.8657 -4.4711 -8.3635 23 1 10.5311 -5.9608 -6.5695 24 6 7.7515 -1.3771 -3.3700 25 6 3.4716 -1.2044 0.0008 26 6 4.1626 -2.5435 0.0003 27 7 2.1558 -1.1487 -0.0040 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6443 2.1381 -0.0004 32 1 4.5299 2.8018 1.0415 33 1 5.2997 2.3462 -0.4974 34 1 3.7742 3.2633 -0.5026 35 1 5.9070 -0.0992 -1.9926 36 1 8.2488 0.6889 -0.6253 37 1 8.1741 -1.0895 -0.6297 38 1 7.1517 1.2646 -3.2713 39 1 10.4774 0.3936 -2.5292 40 1 10.1541 -1.2324 -1.8393 41 1 10.9162 -1.7949 -4.0568 42 1 10.1191 -0.3654 -4.7823 43 1 11.6702 -3.1064 -6.2609 44 1 7.3951 -2.1400 -2.6780 45 1 6.9273 -1.0189 -3.9869 46 1 4.3253 -2.8688 1.0279 47 1 3.5403 -3.2733 -0.5176 48 1 5.1221 -2.4571 -0.5095 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754756605.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:03 Heat of formation + Delta-G solvation = -57.175892 kcal Electronic energy + Delta-G solvation = -29248.843168 eV Core-core repulsion = 25303.054674 eV Total energy + Delta-G solvation = -3945.788494 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.00726 -40.74064 -39.69961 -36.83129 -35.47913 -35.26244 -34.74787 -33.97698 -31.43671 -30.31767 -29.82815 -28.83994 -28.27864 -27.34659 -25.35351 -23.53239 -22.44383 -22.11278 -21.39743 -21.35889 -19.32740 -18.87197 -18.18230 -17.69608 -17.20207 -16.76533 -16.25996 -16.11073 -15.82800 -15.74261 -15.51104 -15.42537 -14.77709 -14.64360 -14.41998 -14.30569 -14.15026 -13.95495 -13.91269 -13.76156 -13.59367 -13.31347 -13.20649 -13.02420 -12.93503 -12.80731 -12.73300 -12.65079 -12.38901 -12.08934 -11.99673 -11.85455 -11.66989 -11.31476 -10.95263 -10.76161 -10.55796 -10.49866 -10.29696 -9.84231 -8.91932 -7.79089 -5.23992 -0.19297 0.13772 1.34795 1.46632 1.47254 1.57521 1.94191 2.47723 2.54974 3.12353 3.13353 3.30406 3.37959 3.46896 3.59055 3.62740 3.70711 3.88706 3.93151 4.04111 4.30276 4.33323 4.45367 4.46732 4.53142 4.55113 4.59297 4.62650 4.64477 4.67157 4.77023 4.81055 4.92830 4.94435 4.97981 5.04359 5.05521 5.12572 5.15901 5.19030 5.20782 5.45415 5.60580 5.64342 5.78689 6.25394 6.28467 6.75399 6.88632 6.97565 7.08434 7.75240 8.38599 9.23170 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014872 B = 0.002946 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.314026 B = 9502.815814 C =10538.326886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.138 3.862 3 C -0.177 4.177 4 C -0.004 4.004 5 C -0.122 4.122 6 C -0.210 4.210 7 C 0.583 3.417 8 O -0.566 6.566 9 N -0.708 5.708 10 C 0.117 3.883 11 C 0.126 3.874 12 O -0.553 6.553 13 C -0.120 4.120 14 C 0.160 3.840 15 N -0.622 5.622 16 C -0.238 4.238 17 H 0.082 0.918 18 C -0.067 4.067 19 N -0.949 5.949 20 Si 0.980 3.020 21 H -0.266 1.266 22 H -0.293 1.293 23 H -0.291 1.291 24 C 0.113 3.887 25 C 0.162 3.838 26 C -0.111 4.111 27 N -0.511 5.511 28 H 0.092 0.908 29 H 0.073 0.927 30 H 0.102 0.898 31 H 0.176 0.824 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.106 0.894 35 H 0.410 0.590 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.384 0.616 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.075 0.925 42 H -0.015 1.015 43 H 0.247 0.753 44 H 0.038 0.962 45 H 0.031 0.969 46 H 0.084 0.916 47 H 0.090 0.910 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.596 11.147 12.750 25.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.001 3.999 3 C -0.196 4.196 4 C -0.012 4.012 5 C -0.178 4.178 6 C -0.215 4.215 7 C 0.369 3.631 8 O -0.444 6.444 9 N -0.360 5.360 10 C -0.007 4.007 11 C 0.085 3.915 12 O -0.360 6.360 13 C -0.158 4.158 14 C 0.035 3.965 15 N -0.348 5.348 16 C -0.367 4.367 17 H 0.100 0.900 18 C -0.259 4.259 19 N -0.599 5.599 20 Si 0.808 3.192 21 H -0.190 1.190 22 H -0.220 1.220 23 H -0.218 1.218 24 C -0.013 4.013 25 C 0.023 3.977 26 C -0.168 4.168 27 N -0.223 5.223 28 H 0.111 0.889 29 H 0.092 0.908 30 H 0.121 0.879 31 H 0.193 0.807 32 H 0.103 0.897 33 H 0.083 0.917 34 H 0.125 0.875 35 H 0.246 0.754 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.233 0.767 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.093 0.907 42 H 0.003 0.997 43 H 0.057 0.943 44 H 0.055 0.945 45 H 0.049 0.951 46 H 0.103 0.897 47 H 0.109 0.891 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -18.878 10.243 13.282 25.253 hybrid contribution 0.129 -0.238 -1.170 1.201 sum -18.749 10.005 12.112 24.461 Atomic orbital electron populations 1.20867 0.86093 1.04710 1.04364 1.22095 0.98830 0.87911 0.91062 1.22120 0.93087 1.00615 1.03810 1.20635 0.94724 0.94294 0.91528 1.20979 0.99806 0.93089 1.03937 1.20596 0.93284 0.95767 1.11839 1.18106 0.86780 0.74790 0.83472 1.90791 1.70549 1.50939 1.32155 1.45943 1.07223 1.74093 1.08702 1.21894 0.79387 1.03497 0.95908 1.22193 0.96571 0.83513 0.89252 1.86595 1.30924 1.37751 1.80701 1.22908 0.92900 1.01092 0.98931 1.21661 0.91429 0.92421 0.91035 1.44697 1.08339 1.33508 1.48258 1.19479 0.96895 1.04634 1.15725 0.90002 1.25638 0.95707 1.02448 1.02131 1.70047 1.01945 1.43216 1.44643 0.84986 0.77744 0.78559 0.77884 1.19017 1.22035 1.21763 1.22118 0.91793 0.94464 0.92929 1.21406 0.89358 0.94843 0.92049 1.20818 0.99741 0.92463 1.03784 1.67424 1.08615 1.30616 1.15613 0.88913 0.90778 0.87906 0.80691 0.89717 0.91691 0.87493 0.75399 0.89594 0.90647 0.76677 0.89428 0.89402 0.90674 0.99739 0.94276 0.94460 0.95065 0.89705 0.89069 0.91192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.03 10.16 71.23 0.72 -0.30 16 2 C 0.14 2.40 6.78 42.57 0.29 2.69 16 3 C -0.18 -2.55 9.43 22.33 0.21 -2.34 16 4 C 0.00 -0.07 5.95 -19.40 -0.12 -0.18 16 5 C -0.12 -1.65 9.69 71.23 0.69 -0.96 16 6 C -0.21 -4.89 5.65 -19.99 -0.11 -5.01 16 7 C 0.58 15.20 4.35 86.78 0.38 15.58 16 8 O -0.57 -18.87 17.10 -3.87 -0.07 -18.93 16 9 N -0.71 -16.31 5.13 -465.98 -2.39 -18.70 16 10 C 0.12 3.09 4.80 86.38 0.41 3.50 16 11 C 0.13 4.00 0.93 -9.61 -0.01 3.99 16 12 O -0.55 -16.63 13.10 -148.98 -1.95 -18.58 16 13 C -0.12 -4.40 6.26 31.98 0.20 -4.20 16 14 C 0.16 7.93 5.88 86.86 0.51 8.44 16 15 N -0.62 -31.55 3.39 -691.97 -2.35 -33.90 16 16 C -0.24 -13.24 10.27 84.03 0.86 -12.38 16 17 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 18 C -0.07 -3.77 5.49 84.86 0.47 -3.31 16 19 N -0.95 -56.67 10.09 21.65 0.22 -56.45 16 20 Si 0.98 45.51 29.55 68.60 2.03 47.54 16 21 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 22 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 23 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 24 C 0.11 4.31 5.76 86.73 0.50 4.81 16 25 C 0.16 3.93 6.82 42.89 0.29 4.22 16 26 C -0.11 -2.54 9.79 71.23 0.70 -1.84 16 27 N -0.51 -11.88 10.17 -171.07 -1.74 -13.62 16 28 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 29 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.10 0.48 8.07 -2.39 -0.02 0.46 16 31 H 0.18 1.19 8.06 -2.91 -0.02 1.16 16 32 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.06 1.01 7.19 -2.39 -0.02 0.99 16 34 H 0.11 0.84 8.10 -2.38 -0.02 0.82 16 35 H 0.41 8.14 7.46 -92.71 -0.69 7.45 16 36 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.08 2.15 8.03 -2.38 -0.02 2.13 16 38 H 0.38 8.12 8.44 -74.06 -0.62 7.50 16 39 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 40 H 0.09 3.04 7.96 -2.39 -0.02 3.02 16 41 H 0.08 4.24 5.87 -2.38 -0.01 4.22 16 42 H -0.02 -0.85 8.14 -2.39 -0.02 -0.87 16 43 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 44 H 0.04 1.40 7.82 -2.39 -0.02 1.38 16 45 H 0.03 1.15 8.07 -2.39 -0.02 1.14 16 46 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 47 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 48 H 0.07 1.67 7.07 -2.39 -0.02 1.65 16 Total: -1.00 -75.44 391.30 -0.58 -76.02 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: -0.33 Total: 23.90 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: 6.00 Total: 12.71 kcal Atomic # 7 Polarization: -116.40 SS G_CDS: -6.26 Total: -122.66 kcal Atomic # 8 Polarization: -35.49 SS G_CDS: -2.02 Total: -37.51 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -75.44 -0.58 -76.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754756605.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.848 kcal (2) G-P(sol) polarization free energy of solvation -75.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds