Wall clock time and date at job start Tue Mar 31 2020 17:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38346 * 119.46452 * 2 1 4 4 C 1.38360 * 119.30909 * 180.02562 * 3 2 1 5 5 C 1.50695 * 120.85621 * 180.02562 * 4 3 2 6 6 C 1.40025 * 118.28445 * 0.02562 * 4 3 2 7 7 C 1.47841 * 120.55802 * 179.97438 * 6 4 3 8 8 O 1.21548 * 119.99904 * 89.99957 * 7 6 4 9 9 N 1.34777 * 119.99752 * 269.99832 * 7 6 4 10 10 C 1.46503 * 119.99504 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.46567 * 180.02562 * 10 9 7 12 12 O 1.42899 * 110.89074 * 303.88149 * 11 10 9 13 13 C 1.55157 * 111.00339 * 180.02562 * 11 10 9 14 14 C 1.54326 * 102.94369 * 206.38768 * 13 11 10 15 15 N 1.47018 * 107.27077 * 22.19167 * 14 13 11 16 16 C 1.36933 * 125.64791 * 181.02164 * 15 14 13 17 17 H 1.08003 * 120.00191 * 169.69505 * 16 15 14 18 18 C 1.38815 * 120.00279 * 349.70283 * 16 15 14 19 19 N 1.31618 * 119.99973 * 152.99416 * 18 16 15 20 20 Si 1.86804 * 119.99596 * 332.99374 * 18 16 15 21 21 H 1.48502 * 109.47022 * 85.20223 * 20 18 16 22 22 H 1.48492 * 109.46735 * 205.20234 * 20 18 16 23 23 H 1.48498 * 109.47060 * 325.20175 * 20 18 16 24 24 C 1.47432 * 108.70453 * 1.28826 * 15 14 13 25 25 C 1.39525 * 118.88096 * 0.25510 * 6 4 3 26 26 C 1.50699 * 119.71461 * 179.74967 * 25 6 4 27 27 N 1.31691 * 120.56830 * 359.49243 * 25 6 4 28 28 H 1.08995 * 109.47472 * 89.99321 * 1 2 3 29 29 H 1.09006 * 109.47213 * 210.00090 * 1 2 3 30 30 H 1.09007 * 109.46648 * 329.99343 * 1 2 3 31 31 H 1.08008 * 120.34774 * 359.97438 * 3 2 1 32 32 H 1.08996 * 109.47162 * 269.97002 * 5 4 3 33 33 H 1.09000 * 109.47341 * 29.98187 * 5 4 3 34 34 H 1.09005 * 109.46542 * 149.97635 * 5 4 3 35 35 H 0.96993 * 119.99696 * 0.02562 * 9 7 6 36 36 H 1.09000 * 109.47312 * 60.00362 * 10 9 7 37 37 H 1.08998 * 109.47316 * 299.99960 * 10 9 7 38 38 H 0.96704 * 113.99845 * 56.11485 * 12 11 10 39 39 H 1.08996 * 110.71868 * 88.02316 * 13 11 10 40 40 H 1.09006 * 110.71967 * 324.75116 * 13 11 10 41 41 H 1.08994 * 109.88143 * 262.77454 * 14 13 11 42 42 H 1.09004 * 109.88181 * 141.60811 * 14 13 11 43 43 H 0.96998 * 120.00029 * 5.04598 * 19 18 16 44 44 H 1.08998 * 110.36548 * 94.48169 * 24 15 14 45 45 H 1.08998 * 110.36594 * 216.80377 * 24 15 14 46 46 H 1.09005 * 109.47011 * 89.99677 * 26 25 6 47 47 H 1.09002 * 109.47102 * 209.99957 * 26 25 6 48 48 H 1.08999 * 109.46932 * 329.99888 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2045 0.0000 4 6 3.5711 1.2008 -0.0005 5 6 4.3475 2.4923 0.0000 6 6 4.2312 -0.0341 -0.0016 7 6 5.7083 -0.0967 -0.0028 8 8 6.3163 -0.1230 1.0494 9 7 6.3806 -0.1248 -1.1706 10 6 7.8444 -0.1863 -1.1717 11 6 8.3527 -0.2068 -2.6146 12 8 7.7742 -1.2914 -3.3434 13 6 9.9023 -0.2726 -2.6575 14 6 10.2388 0.3833 -4.0133 15 7 9.0937 1.2264 -4.3865 16 6 8.9873 1.9654 -5.5344 17 1 8.0438 2.4197 -5.7987 18 6 10.0921 2.1306 -6.3584 19 7 9.9262 2.3457 -7.6463 20 14 11.8142 2.0476 -5.6395 21 1 12.2565 0.6313 -5.5764 22 1 12.7470 2.8197 -6.4989 23 1 11.8079 2.6256 -4.2716 24 6 8.0815 1.1494 -3.3173 25 6 3.4715 -1.2044 -0.0075 26 6 4.1626 -2.5435 -0.0145 27 7 2.1558 -1.1488 -0.0020 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5140 31 1 1.6444 2.1381 -0.0004 32 1 4.5347 2.8041 -1.0275 33 1 3.7720 3.2620 0.5143 34 1 5.2975 2.3449 0.5138 35 1 5.8954 -0.1035 -2.0101 36 1 8.1704 -1.0909 -0.6583 37 1 8.2452 0.6875 -0.6580 38 1 6.8072 -1.2928 -3.3448 39 1 10.2452 -1.3069 -2.6337 40 1 10.3354 0.2974 -1.8353 41 1 10.3942 -0.3866 -4.7690 42 1 11.1347 0.9966 -3.9162 43 1 9.0335 2.4618 -8.0076 44 1 8.2071 1.9744 -2.6160 45 1 7.0782 1.1617 -3.7430 46 1 4.3294 -2.8717 1.0115 47 1 3.5383 -3.2719 -0.5320 48 1 5.1200 -2.4556 -0.5280 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754756606.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:08 Heat of formation + Delta-G solvation = -27.331409 kcal Electronic energy + Delta-G solvation = -29272.733215 eV Core-core repulsion = 25328.238876 eV Total energy + Delta-G solvation = -3944.494340 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.19459 -39.70918 -38.58770 -35.47843 -34.58526 -34.32951 -34.00868 -32.38599 -30.19449 -29.52031 -28.83803 -28.13662 -27.60462 -25.80736 -23.50859 -22.53856 -21.52054 -21.02143 -20.45238 -20.20900 -18.35555 -17.51598 -17.40434 -16.62739 -16.14420 -15.56400 -15.24457 -15.16409 -14.99313 -14.63357 -14.48845 -13.80108 -13.69986 -13.64089 -13.58259 -13.55774 -13.30391 -13.18796 -13.10705 -12.88150 -12.59678 -12.42291 -12.27779 -12.09602 -12.00998 -11.87781 -11.38997 -11.23567 -10.95312 -10.83943 -10.47955 -10.27366 -9.87243 -9.82446 -9.70992 -9.55879 -9.32307 -9.18675 -9.12548 -8.44347 -7.12969 -6.35997 -3.20923 0.54236 0.85533 2.29373 2.85171 3.27672 3.41880 3.49499 3.67660 3.79311 4.17611 4.21018 4.22881 4.37982 4.56530 4.58275 4.69327 4.86172 4.94697 5.00808 5.05765 5.07708 5.14867 5.15540 5.19838 5.23789 5.29628 5.31535 5.39414 5.50247 5.56458 5.61755 5.68931 5.75507 5.77282 5.78481 5.86237 5.97480 6.07870 6.11470 6.25147 6.29308 6.29398 6.53578 6.78176 7.14591 7.61068 7.62950 7.74698 7.90043 8.30413 9.00248 9.55907 10.21938 11.12578 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018147 B = 0.002840 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.594102 B = 9856.113050 C =10368.623002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.149 3.851 3 C -0.183 4.183 4 C 0.004 3.996 5 C -0.127 4.127 6 C -0.191 4.191 7 C 0.575 3.425 8 O -0.528 6.528 9 N -0.719 5.719 10 C 0.103 3.897 11 C 0.102 3.898 12 O -0.535 6.535 13 C -0.112 4.112 14 C 0.120 3.880 15 N -0.602 5.602 16 C -0.332 4.332 17 H 0.075 0.925 18 C -0.018 4.018 19 N -0.916 5.916 20 Si 1.069 2.931 21 H -0.292 1.292 22 H -0.299 1.299 23 H -0.293 1.293 24 C 0.117 3.883 25 C 0.175 3.825 26 C -0.111 4.111 27 N -0.489 5.489 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.141 0.859 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.400 0.600 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.365 0.635 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.045 0.955 42 H 0.030 0.970 43 H 0.263 0.737 44 H 0.030 0.970 45 H 0.043 0.957 46 H 0.085 0.915 47 H 0.085 0.915 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.979 -5.162 17.582 24.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.012 3.988 3 C -0.203 4.203 4 C -0.004 4.004 5 C -0.184 4.184 6 C -0.197 4.197 7 C 0.360 3.640 8 O -0.404 6.404 9 N -0.371 5.371 10 C -0.021 4.021 11 C 0.060 3.940 12 O -0.339 6.339 13 C -0.151 4.151 14 C -0.005 4.005 15 N -0.329 5.329 16 C -0.459 4.459 17 H 0.092 0.908 18 C -0.219 4.219 19 N -0.557 5.557 20 Si 0.903 3.097 21 H -0.220 1.220 22 H -0.227 1.227 23 H -0.221 1.221 24 C -0.010 4.010 25 C 0.037 3.963 26 C -0.168 4.168 27 N -0.200 5.200 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.158 0.842 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.235 0.765 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.212 0.788 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.063 0.937 42 H 0.047 0.953 43 H 0.073 0.927 44 H 0.048 0.952 45 H 0.062 0.938 46 H 0.103 0.897 47 H 0.104 0.896 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.759 -5.990 17.735 23.232 hybrid contribution -2.018 1.082 0.137 2.294 sum -15.777 -4.908 17.872 24.339 Atomic orbital electron populations 1.20766 0.88419 1.03700 1.03429 1.21435 0.97188 0.88048 0.92143 1.21772 0.93633 0.99607 1.05309 1.20340 0.93847 0.94428 0.91806 1.20964 1.00320 0.93314 1.03763 1.20610 0.94215 0.94747 1.10080 1.17950 0.86310 0.75806 0.83924 1.90817 1.69317 1.49057 1.31176 1.46016 1.07804 1.74833 1.08450 1.22072 0.78897 1.03430 0.97743 1.22723 0.95029 0.88390 0.87854 1.86640 1.23664 1.48089 1.75495 1.22570 0.91522 1.01935 0.99036 1.21642 0.91484 0.93632 0.93747 1.44645 1.16034 1.52530 1.19676 1.19964 0.97743 1.30903 0.97278 0.90762 1.25797 1.02760 0.99155 0.94226 1.70926 1.25235 1.49681 1.09839 0.83714 0.76087 0.76097 0.73824 1.21995 1.22745 1.22117 1.22194 0.94400 0.93179 0.91251 1.21292 0.88939 0.94518 0.91582 1.20826 0.99876 0.92238 1.03857 1.67384 1.08736 1.29137 1.14707 0.89976 0.90229 0.90465 0.84163 0.89523 0.90227 0.90560 0.76483 0.90274 0.89994 0.78820 0.89977 0.89915 0.93656 0.95319 0.92707 0.95230 0.93847 0.89664 0.89642 0.90541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.65 10.16 36.00 0.37 -0.28 16 2 C 0.15 1.41 6.78 -82.51 -0.56 0.85 16 3 C -0.18 -1.62 9.43 -39.50 -0.37 -1.99 16 4 C 0.00 0.04 5.95 -103.91 -0.62 -0.58 16 5 C -0.13 -1.13 9.69 36.00 0.35 -0.78 16 6 C -0.19 -2.21 5.65 -104.82 -0.59 -2.80 16 7 C 0.58 7.23 4.35 -12.33 -0.05 7.18 16 8 O -0.53 -8.39 17.10 5.32 0.09 -8.29 16 9 N -0.72 -8.01 5.20 -61.25 -0.32 -8.33 16 10 C 0.10 1.28 4.88 -4.04 -0.02 1.26 16 11 C 0.10 1.55 0.97 -88.35 -0.09 1.47 16 12 O -0.53 -8.26 13.21 -35.23 -0.47 -8.73 16 13 C -0.11 -1.83 6.15 -24.89 -0.15 -1.99 16 14 C 0.12 2.61 4.94 -3.06 -0.02 2.60 16 15 N -0.60 -14.52 3.29 -169.93 -0.56 -15.08 16 16 C -0.33 -9.43 10.43 -15.06 -0.16 -9.59 16 17 H 0.07 2.21 8.06 -52.48 -0.42 1.79 16 18 C -0.02 -0.54 5.43 -17.43 -0.09 -0.64 16 19 N -0.92 -28.65 13.70 55.49 0.76 -27.89 16 20 Si 1.07 26.86 24.66 -169.99 -4.19 22.66 16 21 H -0.29 -6.95 6.76 56.52 0.38 -6.57 16 22 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 23 H -0.29 -6.98 6.71 56.52 0.38 -6.60 16 24 C 0.12 2.18 6.23 -2.40 -0.01 2.16 16 25 C 0.18 1.98 6.82 -82.17 -0.56 1.42 16 26 C -0.11 -1.05 9.79 36.01 0.35 -0.69 16 27 N -0.49 -5.53 10.17 -5.42 -0.06 -5.58 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.33 8.07 -51.93 -0.42 -0.09 16 31 H 0.14 0.85 8.06 -52.48 -0.42 0.43 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.55 8.10 -51.93 -0.42 0.13 16 34 H 0.08 0.80 7.19 -51.93 -0.37 0.42 16 35 H 0.40 3.91 7.27 -40.82 -0.30 3.61 16 36 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.08 1.05 8.07 -51.93 -0.42 0.63 16 38 H 0.37 4.26 7.69 45.56 0.35 4.61 16 39 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.08 1.17 8.04 -51.93 -0.42 0.75 16 41 H 0.05 1.07 7.82 -51.93 -0.41 0.66 16 42 H 0.03 0.66 3.76 -51.93 -0.20 0.46 16 43 H 0.26 8.10 8.73 -40.82 -0.36 7.75 16 44 H 0.03 0.55 7.99 -51.93 -0.41 0.13 16 45 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.08 0.71 7.07 -51.93 -0.37 0.34 16 LS Contribution 386.62 15.07 5.83 5.83 Total: -1.00 -35.85 386.62 -7.94 -43.79 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -6.80 Total: 4.03 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -2.23 Total: -2.40 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: -0.17 Total: -56.88 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: -0.37 Total: -17.02 kcal Atomic # 14 Polarization: 26.86 SS G_CDS: -4.19 Total: 22.66 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.85 -7.94 -43.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754756606.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.462 kcal (2) G-P(sol) polarization free energy of solvation -35.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds