Wall clock time and date at job start Tue Mar 31 2020 17:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38346 * 119.46452 * 2 1 4 4 C 1.38360 * 119.30909 * 180.02562 * 3 2 1 5 5 C 1.50695 * 120.85621 * 180.02562 * 4 3 2 6 6 C 1.40025 * 118.28445 * 0.02562 * 4 3 2 7 7 C 1.47841 * 120.55802 * 179.97438 * 6 4 3 8 8 O 1.21548 * 119.99904 * 89.99957 * 7 6 4 9 9 N 1.34777 * 119.99752 * 269.99832 * 7 6 4 10 10 C 1.46503 * 119.99504 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.46567 * 180.02562 * 10 9 7 12 12 O 1.42899 * 110.89074 * 303.88149 * 11 10 9 13 13 C 1.55157 * 111.00339 * 180.02562 * 11 10 9 14 14 C 1.54326 * 102.94369 * 206.38768 * 13 11 10 15 15 N 1.47018 * 107.27077 * 22.19167 * 14 13 11 16 16 C 1.36933 * 125.64791 * 181.02164 * 15 14 13 17 17 H 1.08003 * 120.00191 * 169.69505 * 16 15 14 18 18 C 1.38815 * 120.00279 * 349.70283 * 16 15 14 19 19 N 1.31618 * 119.99973 * 152.99416 * 18 16 15 20 20 Si 1.86804 * 119.99596 * 332.99374 * 18 16 15 21 21 H 1.48502 * 109.47022 * 85.20223 * 20 18 16 22 22 H 1.48492 * 109.46735 * 205.20234 * 20 18 16 23 23 H 1.48498 * 109.47060 * 325.20175 * 20 18 16 24 24 C 1.47432 * 108.70453 * 1.28826 * 15 14 13 25 25 C 1.39525 * 118.88096 * 0.25510 * 6 4 3 26 26 C 1.50699 * 119.71461 * 179.74967 * 25 6 4 27 27 N 1.31691 * 120.56830 * 359.49243 * 25 6 4 28 28 H 1.08995 * 109.47472 * 89.99321 * 1 2 3 29 29 H 1.09006 * 109.47213 * 210.00090 * 1 2 3 30 30 H 1.09007 * 109.46648 * 329.99343 * 1 2 3 31 31 H 1.08008 * 120.34774 * 359.97438 * 3 2 1 32 32 H 1.08996 * 109.47162 * 269.97002 * 5 4 3 33 33 H 1.09000 * 109.47341 * 29.98187 * 5 4 3 34 34 H 1.09005 * 109.46542 * 149.97635 * 5 4 3 35 35 H 0.96993 * 119.99696 * 0.02562 * 9 7 6 36 36 H 1.09000 * 109.47312 * 60.00362 * 10 9 7 37 37 H 1.08998 * 109.47316 * 299.99960 * 10 9 7 38 38 H 0.96704 * 113.99845 * 56.11485 * 12 11 10 39 39 H 1.08996 * 110.71868 * 88.02316 * 13 11 10 40 40 H 1.09006 * 110.71967 * 324.75116 * 13 11 10 41 41 H 1.08994 * 109.88143 * 262.77454 * 14 13 11 42 42 H 1.09004 * 109.88181 * 141.60811 * 14 13 11 43 43 H 0.96998 * 120.00029 * 5.04598 * 19 18 16 44 44 H 1.08998 * 110.36548 * 94.48169 * 24 15 14 45 45 H 1.08998 * 110.36594 * 216.80377 * 24 15 14 46 46 H 1.09005 * 109.47011 * 89.99677 * 26 25 6 47 47 H 1.09002 * 109.47102 * 209.99957 * 26 25 6 48 48 H 1.08999 * 109.46932 * 329.99888 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2045 0.0000 4 6 3.5711 1.2008 -0.0005 5 6 4.3475 2.4923 0.0000 6 6 4.2312 -0.0341 -0.0016 7 6 5.7083 -0.0967 -0.0028 8 8 6.3163 -0.1230 1.0494 9 7 6.3806 -0.1248 -1.1706 10 6 7.8444 -0.1863 -1.1717 11 6 8.3527 -0.2068 -2.6146 12 8 7.7742 -1.2914 -3.3434 13 6 9.9023 -0.2726 -2.6575 14 6 10.2388 0.3833 -4.0133 15 7 9.0937 1.2264 -4.3865 16 6 8.9873 1.9654 -5.5344 17 1 8.0438 2.4197 -5.7987 18 6 10.0921 2.1306 -6.3584 19 7 9.9262 2.3457 -7.6463 20 14 11.8142 2.0476 -5.6395 21 1 12.2565 0.6313 -5.5764 22 1 12.7470 2.8197 -6.4989 23 1 11.8079 2.6256 -4.2716 24 6 8.0815 1.1494 -3.3173 25 6 3.4715 -1.2044 -0.0075 26 6 4.1626 -2.5435 -0.0145 27 7 2.1558 -1.1488 -0.0020 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5140 31 1 1.6444 2.1381 -0.0004 32 1 4.5347 2.8041 -1.0275 33 1 3.7720 3.2620 0.5143 34 1 5.2975 2.3449 0.5138 35 1 5.8954 -0.1035 -2.0101 36 1 8.1704 -1.0909 -0.6583 37 1 8.2452 0.6875 -0.6580 38 1 6.8072 -1.2928 -3.3448 39 1 10.2452 -1.3069 -2.6337 40 1 10.3354 0.2974 -1.8353 41 1 10.3942 -0.3866 -4.7690 42 1 11.1347 0.9966 -3.9162 43 1 9.0335 2.4618 -8.0076 44 1 8.2071 1.9744 -2.6160 45 1 7.0782 1.1617 -3.7430 46 1 4.3294 -2.8717 1.0115 47 1 3.5383 -3.2719 -0.5320 48 1 5.1200 -2.4556 -0.5280 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754756606.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:07 Heat of formation + Delta-G solvation = -55.553803 kcal Electronic energy + Delta-G solvation = -29273.957030 eV Core-core repulsion = 25328.238876 eV Total energy + Delta-G solvation = -3945.718155 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.02506 -40.80504 -39.79761 -37.01773 -35.42913 -35.27794 -34.76422 -34.37089 -31.76108 -30.43214 -29.99164 -28.96643 -28.43608 -27.22166 -25.02303 -23.46259 -22.69258 -22.24638 -21.54415 -21.48369 -19.60103 -19.27518 -18.17788 -17.85903 -17.33354 -16.92432 -16.36923 -16.11717 -15.97178 -15.81618 -15.56499 -15.42209 -15.12250 -14.71797 -14.62290 -14.38123 -14.33810 -14.15883 -13.96466 -13.79839 -13.52665 -13.40930 -13.21015 -13.13285 -13.02942 -12.91061 -12.73470 -12.70513 -12.69307 -12.23781 -11.93510 -11.64622 -11.42955 -11.24988 -10.99169 -10.59243 -10.57273 -10.51353 -10.31280 -9.86202 -9.17222 -8.65122 -5.42942 -0.21534 0.11139 1.32913 1.39682 1.50521 1.69645 1.91166 2.51559 2.52758 2.97151 3.05592 3.11605 3.28564 3.40603 3.48293 3.56037 3.63762 3.68645 3.78230 4.01692 4.26788 4.28964 4.29516 4.36478 4.45779 4.51073 4.55337 4.55717 4.59295 4.66092 4.68539 4.70645 4.78833 4.80953 4.86122 4.90884 4.99540 5.05302 5.10515 5.11892 5.16148 5.17727 5.18876 5.55299 5.61578 6.09124 6.21507 6.66517 6.81166 6.86120 6.95286 7.46920 8.10875 8.83712 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018147 B = 0.002840 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.594102 B = 9856.113050 C =10368.623002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.140 3.860 3 C -0.181 4.181 4 C -0.006 4.006 5 C -0.124 4.124 6 C -0.210 4.210 7 C 0.585 3.415 8 O -0.563 6.563 9 N -0.709 5.709 10 C 0.115 3.885 11 C 0.121 3.879 12 O -0.549 6.549 13 C -0.107 4.107 14 C 0.109 3.891 15 N -0.624 5.624 16 C -0.319 4.319 17 H 0.045 0.955 18 C -0.078 4.078 19 N -0.954 5.954 20 Si 1.109 2.891 21 H -0.274 1.274 22 H -0.307 1.307 23 H -0.271 1.271 24 C 0.110 3.890 25 C 0.163 3.837 26 C -0.109 4.109 27 N -0.509 5.509 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.100 0.900 31 H 0.171 0.829 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.057 0.943 35 H 0.408 0.592 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.381 0.619 39 H 0.102 0.898 40 H 0.111 0.889 41 H 0.021 0.979 42 H 0.028 0.972 43 H 0.248 0.752 44 H 0.041 0.959 45 H 0.043 0.957 46 H 0.084 0.916 47 H 0.093 0.907 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.702 -5.511 19.907 26.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.003 3.997 3 C -0.200 4.200 4 C -0.014 4.014 5 C -0.180 4.180 6 C -0.216 4.216 7 C 0.371 3.629 8 O -0.442 6.442 9 N -0.361 5.361 10 C -0.009 4.009 11 C 0.079 3.921 12 O -0.356 6.356 13 C -0.145 4.145 14 C -0.015 4.015 15 N -0.351 5.351 16 C -0.447 4.447 17 H 0.063 0.937 18 C -0.272 4.272 19 N -0.597 5.597 20 Si 0.937 3.063 21 H -0.200 1.200 22 H -0.235 1.235 23 H -0.198 1.198 24 C -0.015 4.015 25 C 0.024 3.976 26 C -0.166 4.166 27 N -0.220 5.220 28 H 0.110 0.890 29 H 0.095 0.905 30 H 0.118 0.882 31 H 0.188 0.812 32 H 0.109 0.891 33 H 0.119 0.881 34 H 0.077 0.923 35 H 0.244 0.756 36 H 0.108 0.892 37 H 0.103 0.897 38 H 0.230 0.770 39 H 0.120 0.880 40 H 0.130 0.870 41 H 0.039 0.961 42 H 0.045 0.955 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.061 0.939 46 H 0.103 0.897 47 H 0.112 0.888 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.531 -6.362 20.087 25.595 hybrid contribution -1.992 1.204 -0.593 2.402 sum -16.523 -5.158 19.495 26.070 Atomic orbital electron populations 1.20866 0.86128 1.04735 1.04337 1.22052 0.98798 0.87857 0.91009 1.22103 0.93144 1.00693 1.04075 1.20601 0.94720 0.94384 0.91656 1.20969 0.99639 0.93384 1.04035 1.20607 0.93498 0.95617 1.11844 1.18033 0.86691 0.74765 0.83438 1.90796 1.70117 1.50875 1.32389 1.45904 1.07413 1.74205 1.08601 1.21885 0.79386 1.04121 0.95487 1.22470 0.94710 0.86186 0.88763 1.86613 1.25337 1.47858 1.75810 1.22626 0.92213 1.03016 0.96604 1.21777 0.90747 0.92840 0.96163 1.44733 1.18230 1.52269 1.19880 1.19886 0.96337 1.29756 0.98765 0.93670 1.27019 1.06551 0.99622 0.94008 1.71037 1.24298 1.53094 1.11300 0.83207 0.71954 0.77152 0.73965 1.19989 1.23528 1.19759 1.22442 0.92983 0.95806 0.90298 1.21522 0.89249 0.95020 0.91762 1.20835 0.99906 0.91892 1.03938 1.67444 1.08742 1.30280 1.15577 0.88964 0.90499 0.88156 0.81183 0.89112 0.88103 0.92350 0.75591 0.89242 0.89684 0.76985 0.87999 0.87029 0.96071 0.95498 0.94221 0.94116 0.93861 0.89710 0.88821 0.90509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.01 10.16 71.23 0.72 -0.29 16 2 C 0.14 2.38 6.78 42.57 0.29 2.67 16 3 C -0.18 -2.75 9.43 22.32 0.21 -2.54 16 4 C -0.01 -0.11 5.95 -19.40 -0.12 -0.22 16 5 C -0.12 -1.98 9.69 71.23 0.69 -1.29 16 6 C -0.21 -4.64 5.65 -19.99 -0.11 -4.75 16 7 C 0.58 13.97 4.35 86.79 0.38 14.34 16 8 O -0.56 -17.32 17.10 -3.87 -0.07 -17.38 16 9 N -0.71 -14.46 5.20 -465.97 -2.42 -16.88 16 10 C 0.12 2.55 4.88 86.38 0.42 2.97 16 11 C 0.12 3.35 0.97 -9.32 -0.01 3.34 16 12 O -0.55 -15.74 13.21 -148.98 -1.97 -17.70 16 13 C -0.11 -3.13 6.15 31.78 0.20 -2.93 16 14 C 0.11 4.57 4.94 86.73 0.43 5.00 16 15 N -0.62 -29.66 3.29 -691.53 -2.27 -31.93 16 16 C -0.32 -18.44 10.43 84.03 0.88 -17.56 16 17 H 0.05 2.80 8.06 -2.91 -0.02 2.78 16 18 C -0.08 -4.66 5.43 84.86 0.46 -4.20 16 19 N -0.95 -61.58 13.70 21.65 0.30 -61.29 16 20 Si 1.11 54.23 24.66 68.60 1.69 55.93 16 21 H -0.27 -12.41 6.76 99.48 0.67 -11.74 16 22 H -0.31 -15.22 7.11 99.48 0.71 -14.51 16 23 H -0.27 -12.12 6.71 99.48 0.67 -11.45 16 24 C 0.11 3.93 6.23 86.93 0.54 4.47 16 25 C 0.16 3.54 6.82 42.89 0.29 3.83 16 26 C -0.11 -1.96 9.79 71.24 0.70 -1.27 16 27 N -0.51 -10.94 10.17 -171.06 -1.74 -12.68 16 28 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 30 H 0.10 0.51 8.07 -2.38 -0.02 0.49 16 31 H 0.17 1.46 8.06 -2.91 -0.02 1.43 16 32 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.10 1.15 8.10 -2.39 -0.02 1.13 16 34 H 0.06 1.15 7.19 -2.38 -0.02 1.14 16 35 H 0.41 7.22 7.27 -92.71 -0.67 6.55 16 36 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.08 1.91 8.07 -2.39 -0.02 1.89 16 38 H 0.38 8.08 7.69 -74.05 -0.57 7.51 16 39 H 0.10 2.63 8.14 -2.39 -0.02 2.62 16 40 H 0.11 2.66 8.04 -2.38 -0.02 2.64 16 41 H 0.02 0.98 7.82 -2.39 -0.02 0.96 16 42 H 0.03 1.16 3.76 -2.38 -0.01 1.16 16 43 H 0.25 16.08 8.73 -92.71 -0.81 15.27 16 44 H 0.04 1.41 7.99 -2.39 -0.02 1.39 16 45 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 47 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 48 H 0.08 1.34 7.07 -2.39 -0.02 1.32 16 Total: -1.00 -79.71 386.62 -0.88 -80.59 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: -0.37 Total: 19.77 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: 5.97 Total: 1.57 kcal Atomic # 7 Polarization: -116.63 SS G_CDS: -6.14 Total: -122.77 kcal Atomic # 8 Polarization: -33.05 SS G_CDS: -2.03 Total: -35.09 kcal Atomic # 14 Polarization: 54.23 SS G_CDS: 1.69 Total: 55.93 kcal Total: -79.71 -0.88 -80.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754756606.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.034 kcal (2) G-P(sol) polarization free energy of solvation -79.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds