Wall clock time and date at job start Tue Mar 31 2020 17:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38356 * 119.41294 * 2 1 4 4 C 1.38335 * 119.46054 * 179.97438 * 3 2 1 5 5 C 1.50693 * 120.82404 * 179.97438 * 4 3 2 6 6 C 1.39985 * 118.34825 * 0.02562 * 4 3 2 7 7 C 1.47528 * 120.59685 * 180.02562 * 6 4 3 8 8 O 1.21584 * 119.99901 * 89.99510 * 7 6 4 9 9 N 1.34781 * 119.99952 * 269.99924 * 7 6 4 10 10 C 1.48146 * 127.83592 * 0.02562 * 9 7 6 11 11 C 1.54389 * 104.71947 * 219.64451 * 10 9 7 12 12 H 1.08998 * 110.34546 * 217.10012 * 11 10 9 13 13 C 1.52998 * 110.34044 * 94.94492 * 11 10 9 14 14 C 1.54289 * 104.96102 * 336.07694 * 11 10 9 15 15 H 1.08996 * 110.34304 * 118.86596 * 14 11 10 16 16 C 1.53002 * 110.34289 * 241.13112 * 14 11 10 17 17 N 1.46499 * 109.46964 * 185.00094 * 16 14 11 18 18 C 1.36936 * 119.99801 * 179.97438 * 17 16 14 19 19 H 1.08004 * 119.99865 * 0.02562 * 18 17 16 20 20 C 1.38809 * 120.00012 * 179.97438 * 18 17 16 21 21 N 1.31619 * 120.00152 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00051 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47170 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46873 * 120.00350 * 22 20 18 25 25 H 1.48499 * 109.47148 * 240.00486 * 22 20 18 26 26 C 1.48427 * 127.98028 * 180.11270 * 9 7 6 27 27 C 1.40284 * 118.80653 * 0.27172 * 6 4 3 28 28 O 1.35431 * 119.79873 * 179.72803 * 27 6 4 29 29 N 1.31883 * 119.40117 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.46885 * 90.00012 * 1 2 3 31 31 H 1.08995 * 109.47349 * 210.00241 * 1 2 3 32 32 H 1.09001 * 109.46793 * 330.00045 * 1 2 3 33 33 H 1.08003 * 120.26853 * 0.02562 * 3 2 1 34 34 H 1.09002 * 109.47423 * 270.02584 * 5 4 3 35 35 H 1.09000 * 109.47310 * 30.02981 * 5 4 3 36 36 H 1.09005 * 109.47253 * 150.02127 * 5 4 3 37 37 H 1.09002 * 110.40776 * 100.80198 * 10 9 7 38 38 H 1.09002 * 110.40863 * 338.48606 * 10 9 7 39 39 H 1.09004 * 109.47334 * 61.45997 * 13 11 10 40 40 H 1.09000 * 109.46957 * 181.45384 * 13 11 10 41 41 H 1.09002 * 109.47681 * 301.45428 * 13 11 10 42 42 H 1.09003 * 109.46396 * 304.99705 * 16 14 11 43 43 H 1.09001 * 109.46979 * 64.99395 * 16 14 11 44 44 H 0.97000 * 120.00123 * 359.97438 * 17 16 14 45 45 H 0.96997 * 120.00680 * 179.97438 * 21 20 18 46 46 H 1.09004 * 110.39413 * 21.57624 * 26 9 7 47 47 H 1.09000 * 110.39150 * 259.16408 * 26 9 7 48 48 H 0.96705 * 113.99903 * 89.99920 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1865 1.2052 0.0000 4 6 3.5698 1.2064 0.0005 5 6 4.3409 2.5011 0.0000 6 6 4.2355 -0.0251 0.0005 7 6 5.7097 -0.0817 0.0016 8 8 6.3164 -0.1054 1.0551 9 7 6.3840 -0.1071 -1.1651 10 6 5.8266 -0.0845 -2.5375 11 6 6.7065 -1.0716 -3.3345 12 1 6.8658 -0.7038 -4.3481 13 6 6.0561 -2.4560 -3.3681 14 6 8.0425 -1.1252 -2.5648 15 1 8.2354 -2.1378 -2.2106 16 6 9.1895 -0.6445 -3.4560 17 7 10.4615 -0.8152 -2.7494 18 6 11.6349 -0.4515 -3.3544 19 1 11.6226 -0.0384 -4.3522 20 6 12.8400 -0.6127 -2.6847 21 7 12.8550 -1.1157 -1.4685 22 14 14.4408 -0.1172 -3.5102 23 1 14.1541 0.4169 -4.8658 24 1 15.1132 0.9290 -2.6984 25 1 15.3277 -1.3029 -3.6222 26 6 7.8529 -0.1658 -1.3700 27 6 3.4757 -1.2043 -0.0059 28 8 4.0990 -2.4066 -0.0116 29 7 2.1544 -1.1490 -0.0005 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6413 2.1375 0.0004 34 1 4.5268 2.8128 -1.0278 35 1 3.7622 3.2689 0.5135 36 1 5.2915 2.3581 0.5140 37 1 5.8998 0.9172 -2.9610 38 1 4.7893 -0.4192 -2.5320 39 1 5.0895 -2.3914 -3.8679 40 1 6.7005 -3.1471 -3.9115 41 1 5.9148 -2.8160 -2.3490 42 1 9.2038 -1.2287 -4.3762 43 1 9.0459 0.4088 -3.6965 44 1 10.4724 -1.1859 -1.8531 45 1 13.6971 -1.2287 -1.0006 46 1 8.3448 -0.5628 -0.4820 47 1 8.2425 0.8232 -1.6113 48 1 4.2795 -2.7602 0.8702 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754818485.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:00 Heat of formation + Delta-G solvation = -32.366379 kcal Electronic energy + Delta-G solvation = -29324.017973 eV Core-core repulsion = 25379.305300 eV Total energy + Delta-G solvation = -3944.712673 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.23382 -39.68319 -37.85388 -37.58647 -34.68365 -34.44764 -32.67199 -32.06614 -31.37030 -29.44981 -28.47235 -27.86248 -26.45341 -25.45158 -23.70591 -23.11266 -21.90130 -21.18755 -19.75174 -19.71315 -18.68591 -17.65702 -17.47823 -16.87126 -16.07612 -15.79257 -15.63791 -14.74690 -14.64560 -14.46425 -14.19940 -13.93559 -13.69879 -13.52153 -13.40701 -13.33757 -13.14396 -12.95012 -12.86964 -12.74947 -12.32795 -12.31271 -12.19132 -12.03968 -11.90454 -11.67509 -11.23108 -11.14417 -10.86099 -10.58559 -10.49960 -10.31523 -10.27921 -9.97365 -9.87210 -9.67016 -9.58809 -9.10268 -8.88154 -8.65415 -6.91871 -5.75104 -3.04458 0.47143 0.76798 2.48284 2.88816 3.02482 3.40889 3.44156 3.49372 3.51959 4.09187 4.17630 4.33077 4.57467 4.62459 4.65439 4.80685 4.88358 4.94994 4.97125 5.04276 5.17166 5.21027 5.24782 5.34563 5.45134 5.47304 5.55818 5.58668 5.60464 5.62499 5.69502 5.77487 5.80677 5.84539 6.01507 6.09148 6.11033 6.15735 6.22379 6.28489 6.40636 6.53054 6.72536 6.85288 7.16285 7.51885 7.57795 7.71033 8.07969 8.43134 9.54438 10.11748 10.46097 11.47627 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022244 B = 0.002623 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.489096 B =10672.736026 C =10995.148351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.165 3.835 3 C -0.187 4.187 4 C 0.011 3.989 5 C -0.126 4.126 6 C -0.192 4.192 7 C 0.594 3.406 8 O -0.534 6.534 9 N -0.608 5.608 10 C 0.107 3.893 11 C -0.099 4.099 12 H 0.089 0.911 13 C -0.140 4.140 14 C -0.102 4.102 15 H 0.084 0.916 16 C 0.164 3.836 17 N -0.733 5.733 18 C -0.240 4.240 19 H 0.071 0.929 20 C -0.014 4.014 21 N -0.931 5.931 22 Si 0.906 3.094 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.292 1.292 26 C 0.116 3.884 27 C 0.356 3.644 28 O -0.474 6.474 29 N -0.506 5.506 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.144 0.856 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.050 0.950 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.023 0.977 43 H 0.021 0.979 44 H 0.384 0.616 45 H 0.255 0.745 46 H 0.085 0.915 47 H 0.080 0.920 48 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.416 4.526 1.088 27.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.027 3.973 3 C -0.207 4.207 4 C 0.003 3.997 5 C -0.182 4.182 6 C -0.199 4.199 7 C 0.380 3.620 8 O -0.411 6.411 9 N -0.340 5.340 10 C -0.017 4.017 11 C -0.119 4.119 12 H 0.107 0.893 13 C -0.198 4.198 14 C -0.122 4.122 15 H 0.102 0.898 16 C 0.036 3.964 17 N -0.378 5.378 18 C -0.371 4.371 19 H 0.089 0.911 20 C -0.210 4.210 21 N -0.580 5.580 22 Si 0.737 3.263 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.006 4.006 27 C 0.176 3.824 28 O -0.281 6.281 29 N -0.226 5.226 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.162 0.838 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.041 0.959 43 H 0.039 0.961 44 H 0.218 0.782 45 H 0.065 0.935 46 H 0.104 0.896 47 H 0.098 0.902 48 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -27.447 3.824 1.040 27.731 hybrid contribution 1.492 0.668 0.296 1.661 sum -25.955 4.492 1.336 26.375 Atomic orbital electron populations 1.20793 0.88148 1.03871 1.03537 1.21171 0.96966 0.87075 0.92044 1.21770 0.93557 0.99624 1.05739 1.20276 0.93667 0.94227 0.91576 1.20953 1.00586 0.93022 1.03637 1.20873 0.94874 0.94144 1.10001 1.17286 0.85589 0.76372 0.82718 1.90847 1.69271 1.50664 1.30300 1.49026 1.08784 1.71132 1.05058 1.22477 0.97940 0.99620 0.81630 1.22097 0.94596 0.95785 0.99385 0.89319 1.21820 0.99764 0.95892 1.02283 1.22392 0.94399 1.00177 0.95195 0.89782 1.20723 0.85003 0.97145 0.93558 1.42390 1.00602 1.76794 1.17970 1.19248 0.84675 1.34477 0.98700 0.91140 1.24752 0.97734 1.01936 0.96562 1.69669 1.25465 1.50788 1.12079 0.86129 0.84063 0.77681 0.78377 1.20581 1.21886 1.21883 1.22565 0.78357 1.00404 0.99233 1.18995 0.86268 0.84519 0.92607 1.84701 1.76610 1.32465 1.34363 1.67066 1.09096 1.30397 1.16065 0.89887 0.90123 0.90229 0.83824 0.89667 0.90092 0.90331 0.90959 0.90957 0.93084 0.92191 0.92217 0.95912 0.96126 0.78209 0.93524 0.89607 0.90214 0.73392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.59 10.16 36.01 0.37 -0.22 16 2 C 0.17 1.51 6.78 -82.53 -0.56 0.95 16 3 C -0.19 -1.53 9.41 -39.50 -0.37 -1.90 16 4 C 0.01 0.11 5.95 -103.94 -0.62 -0.51 16 5 C -0.13 -1.09 9.69 36.00 0.35 -0.74 16 6 C -0.19 -2.46 4.56 -104.69 -0.48 -2.94 16 7 C 0.59 9.16 5.52 -12.47 -0.07 9.09 16 8 O -0.53 -10.19 17.39 5.29 0.09 -10.10 16 9 N -0.61 -8.83 3.33 -170.29 -0.57 -9.39 16 10 C 0.11 1.27 6.44 -2.41 -0.02 1.25 16 11 C -0.10 -1.25 3.31 -89.22 -0.29 -1.54 16 12 H 0.09 1.03 7.72 -51.93 -0.40 0.62 16 13 C -0.14 -1.69 8.90 37.16 0.33 -1.36 16 14 C -0.10 -1.63 2.75 -89.21 -0.25 -1.88 16 15 H 0.08 1.46 7.71 -51.93 -0.40 1.06 16 16 C 0.16 3.16 5.38 -4.04 -0.02 3.14 16 17 N -0.73 -18.36 5.48 -59.91 -0.33 -18.69 16 18 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 19 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 20 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 21 N -0.93 -28.45 13.06 55.49 0.72 -27.72 16 22 Si 0.91 22.50 29.55 -169.99 -5.02 17.47 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 C 0.12 1.92 6.42 -2.25 -0.01 1.91 16 27 C 0.36 4.50 7.77 -16.61 -0.13 4.37 16 28 O -0.47 -5.79 13.01 -17.98 -0.23 -6.02 16 29 N -0.51 -5.98 10.28 -9.21 -0.09 -6.08 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.27 8.07 -51.93 -0.42 -0.15 16 33 H 0.14 0.72 8.06 -52.48 -0.42 0.30 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.51 8.10 -51.93 -0.42 0.09 16 36 H 0.08 0.87 7.19 -51.93 -0.37 0.50 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.83 7.16 -51.93 -0.37 0.46 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.02 0.40 7.98 -51.93 -0.41 -0.02 16 44 H 0.38 10.23 7.61 -40.82 -0.31 9.92 16 45 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 46 H 0.09 1.63 7.89 -51.93 -0.41 1.22 16 47 H 0.08 1.36 7.75 -51.93 -0.40 0.95 16 48 H 0.41 3.47 9.06 45.56 0.41 3.89 16 LS Contribution 397.52 15.07 5.99 5.99 Total: -1.00 -35.12 397.52 -8.32 -43.44 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -6.86 Total: 8.82 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: -2.02 Total: 2.28 kcal Atomic # 7 Polarization: -61.62 SS G_CDS: -0.26 Total: -61.88 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: -0.14 Total: -16.12 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.12 -8.32 -43.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754818485.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.072 kcal (2) G-P(sol) polarization free energy of solvation -35.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds