Wall clock time and date at job start Tue Mar 31 2020 17:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46503 * 109.45531 * 2 1 4 4 C 1.36934 * 120.00244 * 60.00185 * 3 2 1 5 5 H 1.08003 * 119.99801 * 0.02562 * 4 3 2 6 6 C 1.38810 * 120.00227 * 179.97438 * 4 3 2 7 7 N 1.31619 * 119.99627 * 359.97438 * 6 4 3 8 8 Si 1.86792 * 120.00194 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47431 * 180.02562 * 8 6 4 10 10 H 1.48507 * 109.47048 * 299.99907 * 8 6 4 11 11 H 1.48499 * 109.47479 * 59.99894 * 8 6 4 12 12 C 1.53042 * 109.46159 * 119.97266 * 2 1 3 13 13 C 1.53162 * 109.32561 * 181.38996 * 12 2 1 14 14 N 1.46929 * 108.76621 * 305.35361 * 13 12 2 15 15 C 1.34774 * 120.63039 * 233.59130 * 14 13 12 16 16 O 1.21493 * 120.00092 * 173.30390 * 15 14 13 17 17 C 1.48335 * 120.00023 * 353.30189 * 15 14 13 18 18 N 1.31492 * 127.15320 * 354.09974 * 17 15 14 19 19 O 1.21434 * 111.52566 * 179.97438 * 18 17 15 20 20 C 1.33186 * 111.57196 * 359.95659 * 19 18 17 21 21 C 1.35385 * 106.63123 * 359.84165 * 20 19 18 22 22 C 1.50059 * 124.93785 * 180.02562 * 21 20 19 23 23 C 1.53551 * 108.23068 * 344.08442 * 22 21 20 24 24 C 1.53108 * 109.50335 * 49.20426 * 23 22 21 25 25 C 1.50596 * 129.60677 * 180.19750 * 20 19 18 26 26 C 1.46927 * 118.73905 * 53.60952 * 14 13 12 27 27 C 1.53035 * 109.45772 * 240.02821 * 2 1 3 28 28 H 1.08997 * 109.47300 * 60.00113 * 1 2 3 29 29 H 1.09005 * 109.46894 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46801 * 299.99417 * 1 2 3 31 31 H 0.97004 * 119.99501 * 239.99966 * 3 2 1 32 32 H 0.96997 * 120.00155 * 0.02562 * 7 6 4 33 33 H 1.09004 * 109.49789 * 301.32443 * 12 2 1 34 34 H 1.08992 * 109.49839 * 61.42017 * 12 2 1 35 35 H 1.09004 * 109.58775 * 185.57441 * 13 12 2 36 36 H 1.08999 * 109.59430 * 65.14028 * 13 12 2 37 37 H 1.09005 * 109.70997 * 103.76677 * 22 21 20 38 38 H 1.08998 * 109.71641 * 224.35550 * 22 21 20 39 39 H 1.09002 * 109.46621 * 169.21643 * 23 22 21 40 40 H 1.09002 * 109.46247 * 289.20242 * 23 22 21 41 41 H 1.08992 * 109.42976 * 50.21776 * 24 23 22 42 42 H 1.08998 * 109.42702 * 170.11639 * 24 23 22 43 43 H 1.09000 * 109.69347 * 282.93174 * 25 20 19 44 44 H 1.08997 * 109.69400 * 43.52492 * 25 20 19 45 45 H 1.09000 * 109.58381 * 186.60384 * 26 14 13 46 46 H 1.08999 * 109.58415 * 66.17895 * 26 14 13 47 47 H 1.09002 * 109.49986 * 298.57617 * 27 2 1 48 48 H 1.09000 * 109.50059 * 58.64135 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0180 1.3814 0.0000 4 6 1.6870 2.2245 1.0270 5 1 1.0666 1.8709 1.8373 6 6 2.1498 3.5332 1.0273 7 7 2.9072 3.9635 0.0406 8 14 1.6989 4.6830 2.4286 9 1 2.3130 6.0145 2.1935 10 1 0.2222 4.8247 2.4970 11 1 2.2024 4.1243 3.7090 12 6 2.0400 -0.7209 1.2500 13 6 3.5712 -0.6888 1.2645 14 7 4.0677 -1.2492 0.0003 15 6 4.9617 -2.2577 0.0004 16 8 5.2728 -2.7938 -1.0445 17 6 5.5659 -2.7131 1.2763 18 7 5.4161 -2.1700 2.4644 19 8 6.0397 -2.7749 3.3127 20 6 6.6931 -3.8128 2.7932 21 6 6.4155 -3.8215 1.4682 22 6 6.9440 -4.8255 0.4861 23 6 8.1264 -5.5577 1.1369 24 6 7.7244 -6.0368 2.5344 25 6 7.5766 -4.8274 3.4700 26 6 3.5714 -0.6889 -1.2641 27 6 2.0398 -0.7209 -1.2500 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 2.5756 1.6987 -0.7276 32 1 3.1416 3.3663 -0.6869 33 1 1.6575 -0.2208 2.1399 34 1 1.6978 -1.7556 1.2383 35 1 3.9413 -1.2848 2.0987 36 1 3.9142 0.3407 1.3676 37 1 6.1613 -5.5415 0.2351 38 1 7.2788 -4.3153 -0.4171 39 1 8.4039 -6.4157 0.5245 40 1 8.9752 -4.8783 1.2161 41 1 6.7771 -6.5727 2.4754 42 1 8.4940 -6.7027 2.9247 43 1 8.5531 -4.3873 3.6722 44 1 7.1173 -5.1491 4.4046 45 1 3.9417 -1.2850 -2.0981 46 1 3.9144 0.3405 -1.3671 47 1 1.6976 -1.7557 -1.2382 48 1 1.6569 -0.2212 -2.1398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755133281.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:27 Heat of formation + Delta-G solvation = 40.653675 kcal Electronic energy + Delta-G solvation = -30100.093956 eV Core-core repulsion = 26158.547671 eV Total energy + Delta-G solvation = -3941.546285 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.16497 -40.00301 -38.12690 -37.69048 -34.75490 -33.98699 -32.55569 -31.20680 -30.96085 -30.28096 -28.77332 -27.85001 -25.26013 -24.36442 -23.58879 -23.23387 -22.70789 -22.19415 -20.28411 -19.66274 -18.42135 -17.88361 -17.25849 -16.95231 -16.72895 -15.74119 -15.32410 -15.24511 -14.71705 -14.36773 -14.22213 -14.13379 -13.78916 -13.60713 -13.52961 -13.38000 -13.34488 -13.09365 -12.66121 -12.60068 -12.28310 -11.61941 -11.50934 -11.36758 -11.30996 -11.28821 -11.25889 -10.98495 -10.76763 -10.75986 -10.49284 -10.31720 -10.17396 -9.96947 -9.94446 -9.72357 -9.22651 -9.08201 -8.92004 -8.32997 -7.02288 -6.07505 -3.07882 1.07920 1.58323 2.71041 3.04535 3.23176 3.52099 3.54981 3.72317 3.93252 4.25210 4.41247 4.47600 4.67347 4.71113 4.74485 4.86621 5.08896 5.11489 5.16308 5.24996 5.32290 5.34023 5.41825 5.48084 5.52534 5.60265 5.65121 5.66877 5.74329 5.77209 5.78210 5.93434 5.98441 5.99433 6.07913 6.16911 6.20036 6.31362 6.44526 6.49210 6.55235 6.66316 6.81417 6.96600 7.01204 7.55942 7.83101 7.94533 8.22223 8.76932 9.23256 10.09937 10.25540 11.40316 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016708 B = 0.003305 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.462055 B = 8469.179191 C = 9294.394488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.202 3.798 3 N -0.728 5.728 4 C -0.321 4.321 5 H 0.065 0.935 6 C -0.045 4.045 7 N -0.945 5.945 8 Si 1.075 2.925 9 H -0.286 1.286 10 H -0.297 1.297 11 H -0.296 1.296 12 C -0.131 4.131 13 C 0.097 3.903 14 N -0.582 5.582 15 C 0.593 3.407 16 O -0.537 6.537 17 C -0.009 4.009 18 N -0.324 5.324 19 O 0.120 5.880 20 C -0.041 4.041 21 C -0.154 4.154 22 C -0.044 4.044 23 C -0.124 4.124 24 C -0.118 4.118 25 C -0.035 4.035 26 C 0.117 3.883 27 C -0.130 4.130 28 H 0.049 0.951 29 H 0.035 0.965 30 H 0.057 0.943 31 H 0.366 0.634 32 H 0.254 0.746 33 H 0.077 0.923 34 H 0.046 0.954 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.080 0.920 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.087 0.913 46 H 0.076 0.924 47 H 0.064 0.936 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.486 -21.338 4.580 23.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.111 3.889 3 N -0.371 5.371 4 C -0.452 4.452 5 H 0.083 0.917 6 C -0.242 4.242 7 N -0.591 5.591 8 Si 0.907 3.093 9 H -0.212 1.212 10 H -0.224 1.224 11 H -0.223 1.223 12 C -0.171 4.171 13 C -0.025 4.025 14 N -0.313 5.313 15 C 0.378 3.622 16 O -0.414 6.414 17 C -0.166 4.166 18 N -0.029 5.029 19 O 0.050 5.950 20 C -0.105 4.105 21 C -0.159 4.159 22 C -0.082 4.082 23 C -0.161 4.161 24 C -0.156 4.156 25 C -0.073 4.073 26 C -0.005 4.005 27 C -0.169 4.169 28 H 0.068 0.932 29 H 0.054 0.946 30 H 0.076 0.924 31 H 0.200 0.800 32 H 0.065 0.935 33 H 0.095 0.905 34 H 0.064 0.936 35 H 0.120 0.880 36 H 0.106 0.894 37 H 0.099 0.901 38 H 0.108 0.892 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.099 0.901 43 H 0.113 0.887 44 H 0.110 0.890 45 H 0.105 0.895 46 H 0.094 0.906 47 H 0.083 0.917 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.986 -19.020 5.197 21.273 hybrid contribution -0.007 -1.714 -1.063 2.016 sum 7.979 -20.734 4.134 22.597 Atomic orbital electron populations 1.22191 0.97419 0.98979 1.02165 1.19483 0.92230 0.85729 0.91497 1.42504 1.61215 1.06652 1.26764 1.19908 1.29515 0.94379 1.01434 0.91745 1.25654 0.99067 0.95981 1.03507 1.70888 1.38940 1.37927 1.11297 0.83298 0.75317 0.76351 0.74371 1.21175 1.22417 1.22319 1.22270 0.94657 0.98892 1.01310 1.22353 0.95040 1.00949 0.84197 1.48011 1.40848 1.33251 1.09213 1.16947 0.79506 0.79998 0.85722 1.90726 1.62905 1.56497 1.31295 1.23056 1.02571 0.97179 0.93834 1.74619 1.12557 1.16901 0.98854 1.84737 1.45059 1.31580 1.33638 1.24114 1.00120 0.93011 0.93267 1.20621 1.01387 0.98814 0.95085 1.19989 0.97260 0.94764 0.96158 1.21725 0.97979 1.00480 0.95934 1.21687 1.02793 0.96194 0.94901 1.20293 0.97174 0.91145 0.98661 1.21641 0.94455 0.99163 0.85222 1.22108 0.94606 1.00686 0.99473 0.93226 0.94562 0.92419 0.79973 0.93507 0.90491 0.93575 0.88015 0.89414 0.90058 0.89156 0.90668 0.91328 0.90993 0.90122 0.88666 0.88950 0.89506 0.90621 0.91688 0.90662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 8.44 37.16 0.31 -2.42 16 2 C 0.20 3.91 0.74 -131.77 -0.10 3.81 16 3 N -0.73 -17.13 4.13 -47.19 -0.19 -17.32 16 4 C -0.32 -8.53 8.68 -15.06 -0.13 -8.66 16 5 H 0.06 1.70 6.70 -52.48 -0.35 1.35 16 6 C -0.04 -1.26 5.50 -17.43 -0.10 -1.36 16 7 N -0.94 -28.72 13.70 55.49 0.76 -27.96 16 8 Si 1.08 25.77 29.92 -169.99 -5.09 20.69 16 9 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 10 H -0.30 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.30 -6.80 7.11 56.52 0.40 -6.40 16 12 C -0.13 -2.44 4.70 -26.63 -0.13 -2.57 16 13 C 0.10 1.83 5.89 -3.72 -0.02 1.81 16 14 N -0.58 -10.61 2.97 -173.71 -0.52 -11.13 16 15 C 0.59 10.71 7.71 -12.11 -0.09 10.62 16 16 O -0.54 -10.27 15.46 5.37 0.08 -10.18 16 17 C -0.01 -0.14 6.87 -82.82 -0.57 -0.71 16 18 N -0.32 -5.19 8.69 33.29 0.29 -4.90 16 19 O 0.12 1.61 11.18 19.20 0.21 1.82 16 20 C -0.04 -0.45 7.38 -35.38 -0.26 -0.71 16 21 C -0.15 -1.99 6.04 -104.91 -0.63 -2.63 16 22 C -0.04 -0.46 5.71 -27.91 -0.16 -0.62 16 23 C -0.12 -0.86 5.91 -26.39 -0.16 -1.01 16 24 C -0.12 -0.65 5.89 -26.35 -0.16 -0.80 16 25 C -0.03 -0.22 6.31 -27.61 -0.17 -0.39 16 26 C 0.12 2.06 6.17 -3.71 -0.02 2.04 16 27 C -0.13 -2.21 4.96 -26.61 -0.13 -2.34 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 1.14 7.27 -51.93 -0.38 0.76 16 31 H 0.37 9.05 5.29 -40.82 -0.22 8.83 16 32 H 0.25 7.60 6.77 -40.82 -0.28 7.32 16 33 H 0.08 1.52 7.31 -51.93 -0.38 1.14 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.10 1.85 4.18 -57.10 -0.24 1.61 16 36 H 0.09 1.95 7.74 -51.93 -0.40 1.55 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.09 1.08 7.75 -51.93 -0.40 0.67 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 41 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 42 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.09 1.46 7.00 -51.93 -0.36 1.10 16 46 H 0.08 1.43 6.94 -51.93 -0.36 1.07 16 47 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 368.88 15.07 5.56 5.56 Total: -1.00 -31.99 368.88 -8.64 -40.63 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -7.23 Total: 8.75 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: -2.51 Total: -5.96 kcal Atomic # 7 Polarization: -61.64 SS G_CDS: 0.34 Total: -61.30 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: 0.30 Total: -8.36 kcal Atomic # 14 Polarization: 25.77 SS G_CDS: -5.09 Total: 20.69 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.99 -8.64 -40.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755133281.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.286 kcal (2) G-P(sol) polarization free energy of solvation -31.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds