Wall clock time and date at job start Tue Mar 31 2020 18:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35579 * 118.80430 * 2 1 4 4 C 1.34869 * 121.79860 * 179.97438 * 3 2 1 5 5 C 1.41666 * 119.33892 * 359.79811 * 4 3 2 6 6 O 1.22088 * 121.06782 * 180.23989 * 5 4 3 7 7 C 1.47096 * 117.86297 * 0.43837 * 5 4 3 8 8 C 1.47284 * 120.88241 * 179.79926 * 7 5 4 9 9 O 1.21623 * 120.00208 * 359.71866 * 8 7 5 10 10 N 1.34780 * 120.00189 * 179.44679 * 8 7 5 11 11 C 1.46493 * 120.00140 * 180.27291 * 10 8 7 12 12 H 1.09003 * 109.46116 * 34.97019 * 11 10 8 13 13 C 1.53044 * 109.46346 * 274.99890 * 11 10 8 14 14 C 1.53188 * 109.31237 * 178.61234 * 13 11 10 15 15 N 1.46922 * 108.77582 * 54.63961 * 14 13 11 16 16 C 1.36935 * 120.63199 * 126.40748 * 15 14 13 17 17 H 1.07997 * 120.00144 * 331.82853 * 16 15 14 18 18 C 1.38822 * 119.99929 * 151.81957 * 16 15 14 19 19 N 1.31617 * 119.99864 * 343.07473 * 18 16 15 20 20 Si 1.86803 * 119.99825 * 163.07089 * 18 16 15 21 21 H 1.48497 * 109.46943 * 90.00355 * 20 18 16 22 22 H 1.48494 * 109.46762 * 210.00490 * 20 18 16 23 23 H 1.48498 * 109.46912 * 330.00140 * 20 18 16 24 24 C 1.46930 * 118.73820 * 306.38540 * 15 14 13 25 25 C 1.53045 * 109.46052 * 154.93078 * 11 10 8 26 26 C 1.52995 * 109.49683 * 301.33842 * 25 11 10 27 27 C 1.53002 * 109.49633 * 61.43457 * 25 11 10 28 28 C 1.34348 * 118.80457 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.47146 * 270.02264 * 1 2 3 30 30 H 1.09001 * 109.47036 * 30.02456 * 1 2 3 31 31 H 1.08996 * 109.47060 * 150.02346 * 1 2 3 32 32 H 1.08006 * 119.10251 * 359.97171 * 3 2 1 33 33 H 1.08005 * 120.32710 * 180.02562 * 4 3 2 34 34 H 0.97001 * 119.99336 * 0.27728 * 10 8 7 35 35 H 1.08996 * 109.49512 * 298.56958 * 13 11 10 36 36 H 1.09002 * 109.49240 * 58.62885 * 13 11 10 37 37 H 1.09007 * 109.58302 * 174.42630 * 14 13 11 38 38 H 1.09000 * 109.59214 * 294.70635 * 14 13 11 39 39 H 0.96995 * 119.99857 * 179.97438 * 19 18 16 40 40 H 1.09000 * 109.58843 * 173.39473 * 24 15 14 41 41 H 1.08996 * 109.58561 * 293.68360 * 24 15 14 42 42 H 1.09004 * 109.47279 * 59.99773 * 26 25 11 43 43 H 1.09002 * 109.47019 * 180.02562 * 26 25 11 44 44 H 1.09000 * 109.47632 * 299.99817 * 26 25 11 45 45 H 1.08998 * 109.47034 * 60.00220 * 27 25 11 46 46 H 1.08997 * 109.47023 * 179.97438 * 27 25 11 47 47 H 1.09002 * 109.47074 * 300.00530 * 27 25 11 48 48 H 1.08001 * 119.81415 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1183 1.1880 0.0000 4 6 3.4651 1.2585 0.0005 5 6 4.2228 0.0615 0.0054 6 8 5.4434 0.0885 0.0104 7 6 3.4918 -1.2149 -0.0002 8 6 4.2129 -2.4992 0.0000 9 8 5.4290 -2.5137 -0.0003 10 7 3.5251 -3.6583 0.0061 11 6 4.2424 -4.9356 0.0123 12 1 5.1547 -4.8369 0.6006 13 6 4.6012 -5.3259 -1.4233 14 6 5.3812 -6.6443 -1.4100 15 7 4.5925 -7.6531 -0.6897 16 6 4.3050 -8.8593 -1.2707 17 1 4.2325 -8.9375 -2.3453 18 6 4.1070 -9.9818 -0.4782 19 7 4.5118 -9.9829 0.7742 20 14 3.2660 -11.4906 -1.1893 21 1 4.2862 -12.3937 -1.7799 22 1 2.5371 -12.2053 -0.1109 23 1 2.3062 -11.0721 -2.2423 24 6 4.1184 -7.3433 0.6661 25 6 3.3525 -6.0170 0.6295 26 6 2.9675 -5.6103 2.0533 27 6 2.0875 -6.1809 -0.2153 28 6 2.1124 -1.1773 0.0005 29 1 -0.3633 0.0004 1.0276 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3633 -0.8902 -0.5135 32 1 1.5445 2.1030 -0.0005 33 1 3.9611 2.2180 0.0009 34 1 2.5552 -3.6466 0.0063 35 1 3.6883 -5.4491 -2.0058 36 1 5.2152 -4.5439 -1.8702 37 1 5.5533 -6.9774 -2.4335 38 1 6.3375 -6.4982 -0.9077 39 1 4.3732 -10.7670 1.3280 40 1 3.4571 -8.1376 1.0124 41 1 4.9704 -7.2572 1.3403 42 1 2.4252 -4.6651 2.0270 43 1 2.3341 -6.3810 2.4926 44 1 3.8692 -5.4952 2.6548 45 1 2.3627 -6.4720 -1.2290 46 1 1.4543 -6.9515 0.2244 47 1 1.5445 -5.2362 -0.2434 48 1 1.5500 -2.0993 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000940879607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:35 Heat of formation + Delta-G solvation = -6.917806 kcal Electronic energy + Delta-G solvation = -29857.781617 eV Core-core repulsion = 25914.172478 eV Total energy + Delta-G solvation = -3943.609140 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.27718 -39.69137 -38.22452 -37.44121 -34.48590 -33.11512 -32.75377 -32.23197 -31.59284 -29.25717 -27.36161 -26.76584 -25.91536 -25.47677 -24.43669 -23.00681 -22.14578 -20.57268 -20.35567 -18.72904 -17.78415 -17.60780 -17.02974 -16.53804 -16.14372 -15.83744 -15.32532 -14.82002 -14.74710 -14.57152 -14.09419 -13.82514 -13.79911 -13.56434 -13.47015 -13.35610 -13.15241 -12.99025 -12.63154 -12.56999 -12.34606 -12.24427 -11.62958 -11.46965 -11.27646 -11.02241 -10.85320 -10.64070 -10.56190 -10.19627 -10.07588 -10.00554 -9.91584 -9.82878 -9.63149 -9.46359 -9.10655 -8.57482 -8.41814 -8.14925 -6.62794 -5.76742 -3.18276 0.66246 1.07916 2.04664 3.10869 3.37219 3.42410 3.45093 3.46594 3.83027 3.86147 4.07896 4.32045 4.48562 4.51091 4.59782 4.77666 4.83679 5.11516 5.25220 5.31622 5.36340 5.44783 5.49937 5.59857 5.63861 5.92563 5.96768 6.06779 6.09400 6.18122 6.24924 6.28562 6.33329 6.44682 6.45510 6.53895 6.57886 6.67603 6.76669 6.88867 6.99418 7.06880 7.10477 7.35974 7.65630 7.81183 7.88266 8.06361 8.47565 8.64837 9.23865 9.87331 10.45098 11.31956 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021714 B = 0.002939 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.185518 B = 9524.224291 C =10121.369619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.477 5.477 3 C 0.125 3.875 4 C -0.267 4.267 5 C 0.404 3.596 6 O -0.476 6.476 7 C -0.290 4.290 8 C 0.566 3.434 9 O -0.511 6.511 10 N -0.725 5.725 11 C 0.166 3.834 12 H 0.082 0.918 13 C -0.142 4.142 14 C 0.147 3.853 15 N -0.590 5.590 16 C -0.249 4.249 17 H 0.065 0.935 18 C 0.003 3.997 19 N -0.902 5.902 20 Si 0.899 3.101 21 H -0.288 1.288 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.187 3.813 25 C -0.097 4.097 26 C -0.133 4.133 27 C -0.125 4.125 28 C 0.166 3.834 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.163 0.837 33 H 0.152 0.848 34 H 0.386 0.614 35 H 0.061 0.939 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.020 0.980 39 H 0.253 0.747 40 H 0.092 0.908 41 H 0.020 0.980 42 H 0.040 0.960 43 H 0.054 0.946 44 H 0.051 0.949 45 H 0.071 0.929 46 H 0.051 0.949 47 H 0.026 0.974 48 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.800 21.874 0.072 26.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.164 5.164 3 C 0.001 3.999 4 C -0.291 4.291 5 C 0.289 3.711 6 O -0.356 6.356 7 C -0.301 4.301 8 C 0.352 3.648 9 O -0.386 6.386 10 N -0.378 5.378 11 C 0.062 3.938 12 H 0.100 0.900 13 C -0.182 4.182 14 C 0.020 3.980 15 N -0.312 5.312 16 C -0.378 4.378 17 H 0.082 0.918 18 C -0.196 4.196 19 N -0.547 5.547 20 Si 0.729 3.271 21 H -0.215 1.215 22 H -0.217 1.217 23 H -0.206 1.206 24 C 0.060 3.940 25 C -0.100 4.100 26 C -0.191 4.191 27 C -0.182 4.182 28 C 0.036 3.964 29 H 0.100 0.900 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.181 0.819 33 H 0.170 0.830 34 H 0.220 0.780 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.038 0.962 39 H 0.063 0.937 40 H 0.110 0.890 41 H 0.038 0.962 42 H 0.059 0.941 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.090 0.910 46 H 0.070 0.930 47 H 0.045 0.955 48 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -14.438 21.736 0.186 26.095 hybrid contribution -1.188 -0.763 -0.257 1.435 sum -15.626 20.974 -0.070 26.155 Atomic orbital electron populations 1.22490 0.76188 1.05626 1.04401 1.42634 1.08548 1.04483 1.60748 1.21672 0.94314 0.88302 0.95627 1.22505 0.93152 1.01448 1.12026 1.18213 0.89355 0.87002 0.76554 1.90839 1.14297 1.88919 1.41559 1.22686 0.92178 0.97636 1.17605 1.17496 0.87350 0.82540 0.77388 1.90858 1.12869 1.86815 1.48050 1.46249 1.09401 1.06056 1.76071 1.20967 0.95228 0.80427 0.97141 0.90033 1.22438 1.00881 0.98996 0.95929 1.20881 0.92684 0.87951 0.96508 1.44049 1.58923 1.13592 1.14594 1.19144 1.42116 0.85083 0.91481 0.91771 1.25029 1.00806 0.97154 0.96590 1.70025 1.48001 1.29281 1.07352 0.86350 0.79524 0.83189 0.78037 1.21457 1.21660 1.20559 1.20805 0.95816 0.91133 0.86217 1.21567 0.96366 0.98087 0.93954 1.21752 1.01005 0.99762 0.96548 1.21732 0.96051 0.98657 1.01781 1.22222 0.93287 0.88998 0.91917 0.90040 0.88992 0.88934 0.81943 0.82989 0.77951 0.92014 0.92666 0.92655 0.96178 0.93674 0.89002 0.96226 0.94054 0.92672 0.92962 0.91023 0.92969 0.95549 0.81863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.02 10.53 59.85 0.63 0.65 16 2 N -0.48 -2.28 2.97 -124.39 -0.37 -2.65 16 3 C 0.12 0.65 10.17 -17.09 -0.17 0.48 16 4 C -0.27 -2.55 10.01 -39.47 -0.40 -2.95 16 5 C 0.40 6.17 6.96 -34.68 -0.24 5.93 16 6 O -0.48 -9.85 16.41 -15.18 -0.25 -10.10 16 7 C -0.29 -3.91 6.05 -102.72 -0.62 -4.53 16 8 C 0.57 9.73 7.74 -12.58 -0.10 9.63 16 9 O -0.51 -11.56 15.23 -14.76 -0.22 -11.78 16 10 N -0.73 -10.67 4.24 -54.88 -0.23 -10.90 16 11 C 0.17 2.98 1.57 -67.89 -0.11 2.88 16 12 H 0.08 1.72 7.57 -51.93 -0.39 1.32 16 13 C -0.14 -2.69 5.31 -26.61 -0.14 -2.83 16 14 C 0.15 3.22 6.52 -3.71 -0.02 3.19 16 15 N -0.59 -14.47 2.43 -172.32 -0.42 -14.89 16 16 C -0.25 -6.67 9.58 -15.06 -0.14 -6.81 16 17 H 0.06 1.70 7.88 -52.49 -0.41 1.29 16 18 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16 19 N -0.90 -25.80 11.20 55.49 0.62 -25.18 16 20 Si 0.90 21.34 29.59 -169.99 -5.03 16.31 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 C 0.19 4.31 3.98 -3.71 -0.01 4.29 16 25 C -0.10 -1.73 0.56 -154.39 -0.09 -1.81 16 26 C -0.13 -2.05 8.31 37.15 0.31 -1.74 16 27 C -0.12 -2.02 7.83 37.16 0.29 -1.72 16 28 C 0.17 1.27 9.79 -16.54 -0.16 1.11 16 29 H 0.08 -0.04 8.14 -51.93 -0.42 -0.46 16 30 H 0.09 -0.14 7.96 -51.93 -0.41 -0.55 16 31 H 0.09 -0.05 7.96 -51.93 -0.41 -0.47 16 32 H 0.16 0.13 7.97 -52.48 -0.42 -0.28 16 33 H 0.15 1.23 8.06 -52.48 -0.42 0.81 16 34 H 0.39 4.32 4.74 -40.82 -0.19 4.12 16 35 H 0.06 1.12 6.34 -51.93 -0.33 0.79 16 36 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.05 1.18 7.93 -51.93 -0.41 0.77 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 40 H 0.09 2.35 6.06 -51.93 -0.31 2.04 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.04 0.53 7.36 -51.93 -0.38 0.14 16 43 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.07 1.31 5.97 -51.93 -0.31 1.00 16 46 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.03 0.32 6.58 -51.93 -0.34 -0.02 16 48 H 0.16 0.77 6.35 -52.49 -0.33 0.44 16 LS Contribution 377.27 15.07 5.69 5.69 Total: -1.00 -38.75 377.27 -8.47 -47.22 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -7.19 Total: 0.54 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: -1.06 Total: 5.75 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: -0.40 Total: -53.63 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -0.47 Total: -21.88 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -38.75 -8.47 -47.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940879607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.301 kcal (2) G-P(sol) polarization free energy of solvation -38.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds