Wall clock time and date at job start Tue Mar 31 2020 17:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30176 * 126.79836 * 2 1 4 4 O 1.20918 * 111.60648 * 180.25810 * 3 2 1 5 5 C 1.34046 * 111.56516 * 359.74327 * 4 3 2 6 6 C 1.50693 * 126.77589 * 180.02562 * 5 4 3 7 7 C 1.35444 * 106.44456 * 0.02562 * 5 4 3 8 8 C 1.50704 * 128.00848 * 179.97438 * 7 5 4 9 9 C 1.50699 * 109.47344 * 89.99806 * 8 7 5 10 10 O 1.21280 * 119.99985 * 359.97438 * 9 8 7 11 11 N 1.34772 * 120.00090 * 180.02562 * 9 8 7 12 12 C 1.47384 * 125.73960 * 179.97438 * 11 9 8 13 13 C 1.55418 * 106.73761 * 179.06064 * 12 11 9 14 14 H 1.08998 * 112.76182 * 146.41298 * 13 12 11 15 15 C 1.52913 * 106.57058 * 270.28916 * 13 12 11 16 16 C 1.51875 * 111.49698 * 169.08543 * 15 13 12 17 17 N 1.44349 * 113.48259 * 321.32817 * 16 15 13 18 18 C 1.36933 * 116.42525 * 187.47770 * 17 16 15 19 19 H 1.08000 * 120.00200 * 152.69711 * 18 17 16 20 20 C 1.38817 * 119.99966 * 332.70251 * 18 17 16 21 21 N 1.31616 * 119.99768 * 335.94571 * 20 18 17 22 22 Si 1.86799 * 119.99837 * 155.94942 * 20 18 17 23 23 H 1.48502 * 109.47453 * 59.99828 * 22 20 18 24 24 H 1.48503 * 109.46923 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47354 * 299.99377 * 22 20 18 26 26 C 1.43979 * 127.14897 * 7.49823 * 17 16 15 27 27 C 1.49791 * 116.29722 * 2.85413 * 26 17 16 28 28 H 1.08997 * 109.24773 * 141.40314 * 27 26 17 29 29 C 1.47940 * 125.74230 * 359.69384 * 11 9 8 30 30 H 1.09003 * 109.46680 * 270.15765 * 1 2 3 31 31 H 1.08994 * 109.47210 * 30.16150 * 1 2 3 32 32 H 1.09002 * 109.46552 * 150.16778 * 1 2 3 33 33 H 1.08998 * 109.47387 * 270.00020 * 6 5 4 34 34 H 1.08998 * 109.47614 * 30.00480 * 6 5 4 35 35 H 1.09007 * 109.47140 * 150.00477 * 6 5 4 36 36 H 1.09006 * 109.46867 * 329.99425 * 8 7 5 37 37 H 1.08997 * 109.47023 * 210.00119 * 8 7 5 38 38 H 1.08997 * 110.00536 * 298.37918 * 12 11 9 39 39 H 1.08992 * 110.00652 * 59.74517 * 12 11 9 40 40 H 1.09002 * 109.04029 * 290.44212 * 15 13 12 41 41 H 1.09000 * 109.04083 * 49.31476 * 15 13 12 42 42 H 1.08996 * 108.95900 * 199.97399 * 16 15 13 43 43 H 1.09009 * 108.01767 * 82.01159 * 16 15 13 44 44 H 0.97003 * 119.99648 * 179.97438 * 21 20 18 45 45 H 1.08997 * 108.11346 * 241.07844 * 26 17 16 46 46 H 1.08998 * 108.11179 * 124.62333 * 26 17 16 47 47 H 1.09002 * 110.56115 * 274.14301 * 29 11 9 48 48 H 1.09002 * 110.56222 * 36.99897 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7255 -0.0051 5 6 3.6025 -0.6067 -0.0036 6 6 4.9022 -1.3693 -0.0080 7 6 2.3541 -1.1319 0.0026 8 6 1.9592 -2.5863 0.0061 9 6 1.8340 -3.0695 1.4280 10 8 2.0452 -2.3080 2.3481 11 7 1.4885 -4.3481 1.6773 12 6 1.3306 -4.9526 3.0122 13 6 0.9037 -6.4299 2.7869 14 1 1.2978 -7.1035 3.5478 15 6 -0.6244 -6.4389 2.7329 16 6 -1.1565 -7.7781 2.2533 17 7 -0.3644 -8.3680 1.2006 18 6 -0.8737 -9.4955 0.6136 19 1 -0.6154 -9.7367 -0.4069 20 6 -1.7221 -10.3283 1.3303 21 7 -1.6785 -10.3376 2.6457 22 14 -2.9255 -11.4358 0.4277 23 1 -2.1764 -12.3631 -0.4580 24 1 -3.7122 -12.2195 1.4137 25 1 -3.8453 -10.6049 -0.3902 26 6 0.9025 -7.9016 0.7001 27 6 1.4889 -6.7075 1.3886 28 1 2.5684 -6.8343 1.4707 29 6 1.1981 -5.3794 0.6572 30 1 -0.3633 0.0028 1.0277 31 1 -0.3633 0.8885 -0.5163 32 1 -0.3632 -0.8915 -0.5113 33 1 5.2112 -1.5548 -1.0367 34 1 5.6682 -0.7848 0.5016 35 1 4.7674 -2.3200 0.5078 36 1 2.7206 -3.1707 -0.5106 37 1 1.0029 -2.7043 -0.5033 38 1 2.2766 -4.9160 3.5523 39 1 0.5601 -4.4232 3.5725 40 1 -1.0166 -6.2209 3.7263 41 1 -0.9604 -5.6658 2.0419 42 1 -2.1764 -7.6452 1.8925 43 1 -1.1720 -8.4591 3.1043 44 1 -2.2717 -10.9193 3.1464 45 1 0.7812 -7.6586 -0.3555 46 1 1.6181 -8.7205 0.7736 47 1 0.1537 -5.3298 0.3492 48 1 1.8579 -5.2638 -0.2027 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088198166.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:30 Heat of formation + Delta-G solvation = 48.266539 kcal Electronic energy + Delta-G solvation = -29392.092255 eV Core-core repulsion = 25450.876088 eV Total energy + Delta-G solvation = -3941.216167 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -45.04109 -40.40016 -38.53491 -35.76793 -35.34829 -33.82634 -32.73888 -31.65070 -30.61868 -29.89393 -28.81171 -28.01972 -27.15533 -25.53371 -23.69249 -22.38754 -22.06085 -21.37535 -20.37866 -19.22435 -17.95187 -17.81852 -17.24656 -17.03851 -16.77893 -15.98554 -15.40630 -14.93169 -14.78520 -14.43063 -13.98196 -13.97010 -13.77049 -13.66481 -13.36378 -13.30412 -13.16887 -13.09676 -12.92376 -12.76958 -12.54925 -12.43229 -12.31796 -12.03281 -11.82242 -11.32246 -11.13823 -11.11222 -10.79815 -10.57547 -10.31253 -10.28736 -10.16351 -9.90609 -9.76734 -9.70342 -9.61666 -9.25674 -8.60550 -8.52414 -6.66454 -5.66882 -3.32492 1.30731 2.01832 2.58274 2.90749 3.06622 3.35429 3.42079 3.43869 4.00972 4.26179 4.41991 4.47431 4.51546 4.67878 4.68971 4.92796 5.00946 5.05730 5.11383 5.11826 5.21969 5.27618 5.33673 5.34241 5.42005 5.47208 5.49388 5.53445 5.55530 5.62465 5.74239 5.80240 5.85515 5.97922 6.00388 6.09633 6.14110 6.32680 6.47830 6.52271 6.60516 6.73388 6.80248 7.25654 7.51249 7.76942 7.88185 8.12856 8.15555 8.48634 9.24419 9.93901 10.23375 11.19129 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.023822 B = 0.002489 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.119961 B =11246.550725 C =11395.959134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.035 3.965 3 N -0.370 5.370 4 O 0.095 5.905 5 C -0.018 4.018 6 C -0.074 4.074 7 C -0.182 4.182 8 C -0.058 4.058 9 C 0.527 3.473 10 O -0.540 6.540 11 N -0.616 5.616 12 C 0.110 3.890 13 C -0.081 4.081 14 H 0.098 0.902 15 C -0.122 4.122 16 C 0.156 3.844 17 N -0.585 5.585 18 C -0.271 4.271 19 H 0.065 0.935 20 C 0.007 3.993 21 N -0.889 5.889 22 Si 0.899 3.101 23 H -0.282 1.282 24 H -0.291 1.291 25 H -0.284 1.284 26 C 0.176 3.824 27 C -0.097 4.097 28 H 0.074 0.926 29 C 0.104 3.896 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.046 0.954 42 H 0.019 0.981 43 H 0.079 0.921 44 H 0.254 0.746 45 H 0.014 0.986 46 H 0.024 0.976 47 H 0.078 0.922 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.519 15.221 -5.253 18.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.124 4.124 3 N -0.076 5.076 4 O 0.031 5.969 5 C -0.082 4.082 6 C -0.131 4.131 7 C -0.187 4.187 8 C -0.099 4.099 9 C 0.316 3.684 10 O -0.417 6.417 11 N -0.350 5.350 12 C -0.013 4.013 13 C -0.100 4.100 14 H 0.116 0.884 15 C -0.160 4.160 16 C 0.031 3.969 17 N -0.309 5.309 18 C -0.401 4.401 19 H 0.083 0.917 20 C -0.193 4.193 21 N -0.532 5.532 22 Si 0.729 3.271 23 H -0.208 1.208 24 H -0.217 1.217 25 H -0.211 1.211 26 C 0.050 3.950 27 C -0.116 4.116 28 H 0.093 0.907 29 C -0.018 4.018 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.108 0.892 36 H 0.124 0.876 37 H 0.125 0.875 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.037 0.963 43 H 0.097 0.903 44 H 0.064 0.936 45 H 0.032 0.968 46 H 0.042 0.958 47 H 0.096 0.904 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 9.391 17.016 -4.615 19.976 hybrid contribution -0.850 -1.451 -0.396 1.728 sum 8.541 15.565 -5.011 18.448 Atomic orbital electron populations 1.20176 0.86065 1.03556 1.03628 1.23353 0.98835 0.88366 1.01875 1.73801 0.89224 1.23841 1.20769 1.84775 1.21691 1.22350 1.68038 1.24158 0.98050 0.83862 1.02086 1.20340 0.90155 0.98769 1.03872 1.20228 0.91914 0.95959 1.10556 1.19865 1.04586 0.90274 0.95140 1.20079 0.77018 0.80323 0.91028 1.90714 1.50427 1.54025 1.46527 1.48745 1.67903 1.09516 1.08884 1.22419 1.00891 0.93897 0.84047 1.22064 0.97223 0.93352 0.97348 0.88364 1.21723 0.93593 1.00203 1.00486 1.20260 0.91765 0.90911 0.93964 1.42645 1.17588 1.28802 1.41912 1.19072 1.25553 1.00482 0.94948 0.91689 1.24980 1.01676 0.97583 0.95037 1.69984 1.38655 1.39520 1.05087 0.86419 0.81542 0.80175 0.78978 1.20813 1.21685 1.21091 1.19247 0.88354 0.92357 0.95084 1.21633 1.00383 0.94244 0.95385 0.90714 1.22618 1.01389 0.86861 0.90975 0.90001 0.90506 0.90121 0.89306 0.89674 0.89232 0.87581 0.87492 0.91906 0.91422 0.92239 0.93534 0.96288 0.90338 0.93597 0.96825 0.95822 0.90415 0.90688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 10.39 36.01 0.37 -0.38 16 2 C 0.03 0.44 7.33 -82.10 -0.60 -0.16 16 3 N -0.37 -5.14 12.07 33.42 0.40 -4.74 16 4 O 0.10 1.21 11.20 17.16 0.19 1.40 16 5 C -0.02 -0.19 7.49 -35.31 -0.26 -0.46 16 6 C -0.07 -0.51 10.25 36.00 0.37 -0.14 16 7 C -0.18 -2.12 4.81 -104.42 -0.50 -2.62 16 8 C -0.06 -0.58 4.97 -29.03 -0.14 -0.72 16 9 C 0.53 7.04 7.85 -10.99 -0.09 6.95 16 10 O -0.54 -9.27 16.37 5.56 0.09 -9.18 16 11 N -0.62 -8.02 3.34 -169.46 -0.57 -8.59 16 12 C 0.11 1.52 6.25 -2.28 -0.01 1.50 16 13 C -0.08 -1.23 3.60 -88.80 -0.32 -1.55 16 14 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 15 C -0.12 -2.10 4.83 -27.35 -0.13 -2.23 16 16 C 0.16 3.49 5.09 -5.76 -0.03 3.46 16 17 N -0.58 -13.59 3.23 -179.51 -0.58 -14.17 16 18 C -0.27 -7.08 9.27 -15.06 -0.14 -7.22 16 19 H 0.07 1.68 7.94 -52.49 -0.42 1.26 16 20 C 0.01 0.19 4.95 -17.43 -0.09 0.11 16 21 N -0.89 -24.68 10.89 55.49 0.60 -24.08 16 22 Si 0.90 20.96 29.62 -169.99 -5.03 15.92 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 26 C 0.18 3.30 5.75 -6.97 -0.04 3.26 16 27 C -0.10 -1.42 2.84 -90.91 -0.26 -1.68 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 29 C 0.10 1.27 5.48 -2.53 -0.01 1.26 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.65 7.65 -51.93 -0.40 0.25 16 33 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.09 0.62 8.06 -51.93 -0.42 0.20 16 36 H 0.11 0.78 7.81 -51.93 -0.41 0.38 16 37 H 0.11 0.90 7.65 -51.93 -0.40 0.50 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.97 7.77 -51.93 -0.40 0.57 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.05 0.78 6.68 -51.93 -0.35 0.43 16 42 H 0.02 0.46 8.11 -51.93 -0.42 0.04 16 43 H 0.08 2.02 5.79 -51.92 -0.30 1.72 16 44 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 45 H 0.01 0.25 7.81 -51.93 -0.41 -0.15 16 46 H 0.02 0.48 8.13 -51.93 -0.42 0.05 16 47 H 0.08 1.03 7.22 -51.93 -0.37 0.66 16 48 H 0.07 0.72 7.51 -51.93 -0.39 0.33 16 LS Contribution 380.76 15.07 5.74 5.74 Total: -1.00 -32.27 380.76 -8.66 -40.93 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -7.62 Total: -2.61 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -1.89 Total: -0.63 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: -0.14 Total: -51.57 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: 0.28 Total: -7.78 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.03 Total: 15.92 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.27 -8.66 -40.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088198166.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.200 kcal (2) G-P(sol) polarization free energy of solvation -32.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds