Wall clock time and date at job start Tue Mar 31 2020 17:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30176 * 126.79836 * 2 1 4 4 O 1.20918 * 111.60648 * 180.25810 * 3 2 1 5 5 C 1.34046 * 111.56516 * 359.74327 * 4 3 2 6 6 C 1.50693 * 126.77589 * 180.02562 * 5 4 3 7 7 C 1.35444 * 106.44456 * 0.02562 * 5 4 3 8 8 C 1.50704 * 128.00848 * 179.97438 * 7 5 4 9 9 C 1.50699 * 109.47344 * 89.99806 * 8 7 5 10 10 O 1.21280 * 119.99985 * 359.97438 * 9 8 7 11 11 N 1.34772 * 120.00090 * 180.02562 * 9 8 7 12 12 C 1.47384 * 125.73960 * 179.97438 * 11 9 8 13 13 C 1.55418 * 106.73761 * 179.06064 * 12 11 9 14 14 H 1.08998 * 112.76182 * 146.41298 * 13 12 11 15 15 C 1.52913 * 106.57058 * 270.28916 * 13 12 11 16 16 C 1.51875 * 111.49698 * 169.08543 * 15 13 12 17 17 N 1.44349 * 113.48259 * 321.32817 * 16 15 13 18 18 C 1.36933 * 116.42525 * 187.47770 * 17 16 15 19 19 H 1.08000 * 120.00200 * 152.69711 * 18 17 16 20 20 C 1.38817 * 119.99966 * 332.70251 * 18 17 16 21 21 N 1.31616 * 119.99768 * 335.94571 * 20 18 17 22 22 Si 1.86799 * 119.99837 * 155.94942 * 20 18 17 23 23 H 1.48502 * 109.47453 * 59.99828 * 22 20 18 24 24 H 1.48503 * 109.46923 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47354 * 299.99377 * 22 20 18 26 26 C 1.43979 * 127.14897 * 7.49823 * 17 16 15 27 27 C 1.49791 * 116.29722 * 2.85413 * 26 17 16 28 28 H 1.08997 * 109.24773 * 141.40314 * 27 26 17 29 29 C 1.47940 * 125.74230 * 359.69384 * 11 9 8 30 30 H 1.09003 * 109.46680 * 270.15765 * 1 2 3 31 31 H 1.08994 * 109.47210 * 30.16150 * 1 2 3 32 32 H 1.09002 * 109.46552 * 150.16778 * 1 2 3 33 33 H 1.08998 * 109.47387 * 270.00020 * 6 5 4 34 34 H 1.08998 * 109.47614 * 30.00480 * 6 5 4 35 35 H 1.09007 * 109.47140 * 150.00477 * 6 5 4 36 36 H 1.09006 * 109.46867 * 329.99425 * 8 7 5 37 37 H 1.08997 * 109.47023 * 210.00119 * 8 7 5 38 38 H 1.08997 * 110.00536 * 298.37918 * 12 11 9 39 39 H 1.08992 * 110.00652 * 59.74517 * 12 11 9 40 40 H 1.09002 * 109.04029 * 290.44212 * 15 13 12 41 41 H 1.09000 * 109.04083 * 49.31476 * 15 13 12 42 42 H 1.08996 * 108.95900 * 199.97399 * 16 15 13 43 43 H 1.09009 * 108.01767 * 82.01159 * 16 15 13 44 44 H 0.97003 * 119.99648 * 179.97438 * 21 20 18 45 45 H 1.08997 * 108.11346 * 241.07844 * 26 17 16 46 46 H 1.08998 * 108.11179 * 124.62333 * 26 17 16 47 47 H 1.09002 * 110.56115 * 274.14301 * 29 11 9 48 48 H 1.09002 * 110.56222 * 36.99897 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7255 -0.0051 5 6 3.6025 -0.6067 -0.0036 6 6 4.9022 -1.3693 -0.0080 7 6 2.3541 -1.1319 0.0026 8 6 1.9592 -2.5863 0.0061 9 6 1.8340 -3.0695 1.4280 10 8 2.0452 -2.3080 2.3481 11 7 1.4885 -4.3481 1.6773 12 6 1.3306 -4.9526 3.0122 13 6 0.9037 -6.4299 2.7869 14 1 1.2978 -7.1035 3.5478 15 6 -0.6244 -6.4389 2.7329 16 6 -1.1565 -7.7781 2.2533 17 7 -0.3644 -8.3680 1.2006 18 6 -0.8737 -9.4955 0.6136 19 1 -0.6154 -9.7367 -0.4069 20 6 -1.7221 -10.3283 1.3303 21 7 -1.6785 -10.3376 2.6457 22 14 -2.9255 -11.4358 0.4277 23 1 -2.1764 -12.3631 -0.4580 24 1 -3.7122 -12.2195 1.4137 25 1 -3.8453 -10.6049 -0.3902 26 6 0.9025 -7.9016 0.7001 27 6 1.4889 -6.7075 1.3886 28 1 2.5684 -6.8343 1.4707 29 6 1.1981 -5.3794 0.6572 30 1 -0.3633 0.0028 1.0277 31 1 -0.3633 0.8885 -0.5163 32 1 -0.3632 -0.8915 -0.5113 33 1 5.2112 -1.5548 -1.0367 34 1 5.6682 -0.7848 0.5016 35 1 4.7674 -2.3200 0.5078 36 1 2.7206 -3.1707 -0.5106 37 1 1.0029 -2.7043 -0.5033 38 1 2.2766 -4.9160 3.5523 39 1 0.5601 -4.4232 3.5725 40 1 -1.0166 -6.2209 3.7263 41 1 -0.9604 -5.6658 2.0419 42 1 -2.1764 -7.6452 1.8925 43 1 -1.1720 -8.4591 3.1043 44 1 -2.2717 -10.9193 3.1464 45 1 0.7812 -7.6586 -0.3555 46 1 1.6181 -8.7205 0.7736 47 1 0.1537 -5.3298 0.3492 48 1 1.8579 -5.2638 -0.2027 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088198166.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:29 Heat of formation + Delta-G solvation = 29.261838 kcal Electronic energy + Delta-G solvation = -29392.916360 eV Core-core repulsion = 25450.876088 eV Total energy + Delta-G solvation = -3942.040273 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -45.91259 -41.53846 -39.75892 -37.27541 -36.25550 -34.61121 -34.23791 -33.13740 -32.05591 -30.92617 -29.63565 -29.17517 -27.97358 -27.04567 -25.19982 -23.68183 -23.36931 -22.56857 -21.18914 -20.20755 -19.35726 -18.89477 -18.74098 -17.92666 -17.84708 -17.16167 -16.85693 -16.32698 -15.95724 -15.62272 -15.50087 -15.16959 -14.91957 -14.65616 -14.47567 -14.34317 -14.18358 -14.00060 -13.88096 -13.73080 -13.52790 -13.43404 -13.31593 -13.14894 -12.93594 -12.87787 -12.78640 -12.48713 -12.19635 -12.02982 -11.91813 -11.74908 -11.45018 -11.28911 -11.17526 -11.08789 -10.77230 -10.48360 -10.07352 -9.67176 -8.61467 -7.64601 -5.35174 0.49178 1.14146 1.48744 1.52136 1.57918 1.60299 2.01097 2.23132 2.54469 3.21371 3.26322 3.40282 3.51803 3.53792 3.75140 3.81374 3.83663 3.89456 4.00921 4.17127 4.34540 4.38814 4.46153 4.50296 4.56764 4.61103 4.61946 4.66727 4.68634 4.70235 4.75754 4.79011 4.81780 4.88385 4.97291 5.03253 5.09710 5.11990 5.12486 5.23800 5.28427 5.34137 5.38977 5.47131 5.73437 5.99100 6.48297 6.51299 7.12852 7.26380 7.30503 8.10678 8.28507 9.16060 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.023822 B = 0.002489 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.119961 B =11246.550725 C =11395.959134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.021 3.979 3 N -0.403 5.403 4 O 0.080 5.920 5 C -0.016 4.016 6 C -0.074 4.074 7 C -0.200 4.200 8 C -0.051 4.051 9 C 0.529 3.471 10 O -0.583 6.583 11 N -0.613 5.613 12 C 0.118 3.882 13 C -0.079 4.079 14 H 0.090 0.910 15 C -0.110 4.110 16 C 0.165 3.835 17 N -0.597 5.597 18 C -0.281 4.281 19 H 0.067 0.933 20 C -0.044 4.044 21 N -0.918 5.918 22 Si 0.957 3.043 23 H -0.273 1.273 24 H -0.297 1.297 25 H -0.282 1.282 26 C 0.173 3.827 27 C -0.094 4.094 28 H 0.097 0.903 29 C 0.112 3.888 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.116 0.884 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.140 0.860 37 H 0.127 0.873 38 H 0.069 0.931 39 H 0.060 0.940 40 H 0.066 0.934 41 H 0.056 0.944 42 H -0.011 1.011 43 H 0.043 0.957 44 H 0.248 0.752 45 H 0.029 0.971 46 H 0.010 0.990 47 H 0.070 0.930 48 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.852 15.620 -7.152 20.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.138 4.138 3 N -0.112 5.112 4 O 0.019 5.981 5 C -0.080 4.080 6 C -0.131 4.131 7 C -0.205 4.205 8 C -0.090 4.090 9 C 0.319 3.681 10 O -0.463 6.463 11 N -0.347 5.347 12 C -0.005 4.005 13 C -0.098 4.098 14 H 0.108 0.892 15 C -0.148 4.148 16 C 0.039 3.961 17 N -0.321 5.321 18 C -0.411 4.411 19 H 0.084 0.916 20 C -0.241 4.241 21 N -0.563 5.563 22 Si 0.786 3.214 23 H -0.199 1.199 24 H -0.223 1.223 25 H -0.208 1.208 26 C 0.048 3.952 27 C -0.114 4.114 28 H 0.116 0.884 29 C -0.009 4.009 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.119 0.881 33 H 0.135 0.865 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.158 0.842 37 H 0.145 0.855 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.007 0.993 43 H 0.060 0.940 44 H 0.058 0.942 45 H 0.047 0.953 46 H 0.028 0.972 47 H 0.089 0.911 48 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 10.755 17.412 -6.550 21.489 hybrid contribution -1.230 -1.591 0.196 2.021 sum 9.525 15.821 -6.354 19.529 Atomic orbital electron populations 1.20272 0.84730 1.04944 1.03509 1.23890 1.00022 0.88707 1.01182 1.73786 0.89848 1.25028 1.22578 1.84729 1.21401 1.23581 1.68405 1.24926 0.99586 0.83232 1.00210 1.20559 0.88403 0.98323 1.05810 1.20506 0.91967 0.96640 1.11339 1.19954 1.06785 0.89379 0.92918 1.20656 0.75727 0.79640 0.92030 1.90707 1.52348 1.55027 1.48217 1.48747 1.67614 1.09751 1.08546 1.22225 1.00930 0.92455 0.84858 1.21967 0.95429 0.94468 0.97918 0.89170 1.21559 0.95280 0.97143 1.00815 1.19975 0.90872 0.92775 0.92437 1.42890 1.19325 1.28193 1.41698 1.19420 1.25506 1.01015 0.95181 0.91557 1.25684 1.03349 0.99437 0.95670 1.70156 1.39343 1.40552 1.06283 0.85494 0.79534 0.78628 0.77768 1.19903 1.22298 1.20830 1.19365 0.86138 0.93615 0.96117 1.21550 1.01185 0.93922 0.94710 0.88449 1.22603 1.02044 0.84843 0.91456 0.90734 0.89805 0.88125 0.86528 0.88839 0.88782 0.84182 0.85503 0.91245 0.92158 0.91545 0.92569 0.99295 0.93964 0.94224 0.95305 0.97236 0.91136 0.86679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.42 10.39 71.24 0.74 -0.68 16 2 C 0.02 0.50 7.33 43.58 0.32 0.82 16 3 N -0.40 -11.10 12.07 -49.55 -0.60 -11.70 16 4 O 0.08 1.98 11.20 71.58 0.80 2.78 16 5 C -0.02 -0.31 7.49 25.04 0.19 -0.13 16 6 C -0.07 -0.78 10.25 71.23 0.73 -0.05 16 7 C -0.20 -4.18 4.81 -19.74 -0.10 -4.28 16 8 C -0.05 -0.80 4.97 29.10 0.14 -0.65 16 9 C 0.53 12.46 7.85 87.66 0.69 13.15 16 10 O -0.58 -19.00 16.37 -3.03 -0.05 -19.05 16 11 N -0.61 -13.84 3.34 -808.43 -2.70 -16.54 16 12 C 0.12 2.99 6.25 87.04 0.54 3.54 16 13 C -0.08 -2.26 3.60 -9.62 -0.03 -2.30 16 14 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 15 C -0.11 -3.72 4.83 30.20 0.15 -3.57 16 16 C 0.16 7.52 5.09 86.41 0.44 7.96 16 17 N -0.60 -27.66 3.23 -721.84 -2.33 -29.99 16 18 C -0.28 -14.71 9.27 84.04 0.78 -13.93 16 19 H 0.07 3.39 7.94 -2.91 -0.02 3.36 16 20 C -0.04 -2.40 4.95 84.86 0.42 -1.98 16 21 N -0.92 -52.45 10.89 21.65 0.24 -52.21 16 22 Si 0.96 43.48 29.62 68.60 2.03 45.51 16 23 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 24 H -0.30 -13.63 7.11 99.48 0.71 -12.93 16 25 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 26 C 0.17 6.18 5.75 85.82 0.49 6.67 16 27 C -0.09 -2.48 2.84 -10.98 -0.03 -2.51 16 28 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 29 C 0.11 2.27 5.48 86.57 0.47 2.74 16 30 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.10 1.39 7.65 -2.39 -0.02 1.37 16 33 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.09 0.95 8.06 -2.38 -0.02 0.93 16 36 H 0.14 1.26 7.81 -2.38 -0.02 1.24 16 37 H 0.13 1.53 7.65 -2.39 -0.02 1.51 16 38 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.06 1.64 7.77 -2.39 -0.02 1.62 16 40 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.06 1.79 6.68 -2.39 -0.02 1.78 16 42 H -0.01 -0.56 8.11 -2.39 -0.02 -0.58 16 43 H 0.04 2.28 5.79 -2.38 -0.01 2.27 16 44 H 0.25 13.84 8.31 -92.71 -0.77 13.07 16 45 H 0.03 0.97 7.81 -2.39 -0.02 0.95 16 46 H 0.01 0.37 8.13 -2.39 -0.02 0.35 16 47 H 0.07 1.59 7.22 -2.39 -0.02 1.58 16 48 H 0.12 1.48 7.51 -2.39 -0.02 1.46 16 Total: -1.00 -72.89 380.76 4.29 -68.60 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: 0.96 Total: 7.81 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: 5.95 Total: 4.80 kcal Atomic # 7 Polarization: -105.05 SS G_CDS: -5.39 Total: -110.45 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: 0.75 Total: -16.27 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -72.89 4.29 -68.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088198166.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.859 kcal (2) G-P(sol) polarization free energy of solvation -72.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds