Wall clock time and date at job start Tue Mar 31 2020 17:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.33855 * 126.26266 * 2 1 4 4 C 1.30524 * 108.96587 * 180.02562 * 3 2 1 5 5 C 1.50698 * 125.44463 * 180.02562 * 4 3 2 6 6 C 1.52995 * 117.49902 * 188.62290 * 5 4 3 7 7 C 1.53000 * 117.49766 * 119.99966 * 5 4 3 8 8 O 1.33783 * 109.10980 * 359.73419 * 4 3 2 9 9 C 1.35268 * 107.68877 * 0.42998 * 8 4 3 10 10 C 1.47087 * 126.61574 * 179.83672 * 9 8 4 11 11 O 1.35328 * 120.00432 * 3.95009 * 10 9 8 12 12 N 1.30388 * 119.99799 * 183.94567 * 10 9 8 13 13 C 1.46500 * 119.99765 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.47188 * 115.00308 * 13 12 10 15 15 C 1.53075 * 109.45330 * 64.78421 * 14 13 12 16 16 C 1.53195 * 109.29368 * 181.24447 * 15 14 13 17 17 N 1.46922 * 108.89313 * 305.57609 * 16 15 14 18 18 C 1.36937 * 120.63389 * 233.51469 * 17 16 15 19 19 H 1.08000 * 120.00110 * 145.97305 * 18 17 16 20 20 C 1.38811 * 119.99955 * 325.97687 * 18 17 16 21 21 N 1.31613 * 120.00027 * 344.67528 * 20 18 17 22 22 Si 1.86804 * 120.00140 * 164.67824 * 20 18 17 23 23 H 1.48505 * 109.46618 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47398 * 119.99660 * 22 20 18 25 25 H 1.48500 * 109.47045 * 240.00153 * 22 20 18 26 26 C 1.46932 * 118.73974 * 53.53968 * 17 16 15 27 27 C 1.53043 * 109.46317 * 184.99696 * 14 13 12 28 28 H 1.09004 * 109.46500 * 263.68278 * 1 2 3 29 29 H 1.08993 * 109.47226 * 23.67815 * 1 2 3 30 30 H 1.09002 * 109.46978 * 143.68709 * 1 2 3 31 31 H 1.08996 * 115.54981 * 334.33538 * 5 4 3 32 32 H 1.08998 * 117.50075 * 359.97438 * 6 5 4 33 33 H 1.08995 * 117.50185 * 145.02072 * 6 5 4 34 34 H 1.08999 * 117.50176 * 214.98298 * 7 5 4 35 35 H 1.08998 * 117.50079 * 0.02562 * 7 5 4 36 36 H 0.96702 * 113.99541 * 5.36300 * 11 10 9 37 37 H 1.08995 * 109.47243 * 355.00006 * 13 12 10 38 38 H 1.09005 * 109.47008 * 235.00132 * 13 12 10 39 39 H 1.09003 * 109.45913 * 304.97297 * 14 13 12 40 40 H 1.09000 * 109.38875 * 61.37004 * 15 14 13 41 41 H 1.09000 * 109.62251 * 301.26213 * 15 14 13 42 42 H 1.09008 * 109.58481 * 185.72269 * 16 15 14 43 43 H 1.08997 * 109.58584 * 65.43785 * 16 15 14 44 44 H 0.97007 * 120.00280 * 179.97438 * 21 20 18 45 45 H 1.09003 * 109.58169 * 66.17483 * 26 17 16 46 46 H 1.08994 * 109.58684 * 186.45702 * 26 17 16 47 47 H 1.09005 * 109.49240 * 58.66205 * 27 14 13 48 48 H 1.09002 * 109.49548 * 298.56536 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2987 1.0793 0.0000 4 6 3.5449 0.6912 -0.0006 5 6 4.7443 1.6036 -0.0002 6 6 6.1188 0.9635 -0.2044 7 6 5.7177 1.4903 1.1748 8 8 3.5872 -0.6459 0.0049 9 6 2.3122 -1.0975 -0.0006 10 6 1.8794 -2.5033 -0.0010 11 8 2.7972 -3.4940 0.0854 12 7 0.6113 -2.7949 -0.0844 13 6 0.1802 -4.1951 -0.0842 14 6 -0.6434 -4.4749 1.1745 15 6 -1.9318 -3.6494 1.1347 16 6 -2.7387 -3.9087 2.4108 17 7 -2.9501 -5.3555 2.5544 18 6 -4.2108 -5.8634 2.7210 19 1 -4.4658 -6.8246 2.2998 20 6 -5.1611 -5.1427 3.4312 21 7 -4.7895 -4.1356 4.1927 22 14 -6.9674 -5.6022 3.3061 23 1 -7.1209 -6.7619 2.3912 24 1 -7.4811 -5.9618 4.6522 25 1 -7.7362 -4.4481 2.7749 26 6 -1.7829 -6.2472 2.5163 27 6 -0.9882 -5.9647 1.2375 28 1 -0.3632 -0.1131 1.0215 29 1 -0.3633 0.9411 -0.4127 30 1 -0.3633 -0.8281 -0.6086 31 1 4.5818 2.5939 -0.4254 32 1 6.1557 -0.1176 -0.3386 33 1 6.8609 1.5326 -0.7643 34 1 6.1958 2.4061 1.5224 35 1 5.4907 0.7557 1.9474 36 1 3.7015 -3.1812 0.2255 37 1 1.0553 -4.8447 -0.0977 38 1 -0.4291 -4.3878 -0.9673 39 1 -0.0648 -4.1984 2.0559 40 1 -2.5217 -3.9410 0.2657 41 1 -1.6857 -2.5896 1.0689 42 1 -3.7024 -3.4037 2.3428 43 1 -2.1890 -3.5323 3.2735 44 1 -5.4536 -3.6317 4.6887 45 1 -1.1530 -6.0619 3.3864 46 1 -2.1157 -7.2851 2.5205 47 1 -0.0691 -6.5508 1.2434 48 1 -1.5880 -6.2363 0.3689 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000329440399.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:22 Heat of formation + Delta-G solvation = 37.401522 kcal Electronic energy + Delta-G solvation = -28582.798702 eV Core-core repulsion = 24641.111392 eV Total energy + Delta-G solvation = -3941.687309 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.72849 -39.13640 -37.77083 -37.57830 -35.71006 -34.69512 -33.05710 -31.70110 -30.43157 -29.71393 -28.17522 -26.82347 -25.10640 -23.67803 -23.03752 -22.20002 -22.05462 -21.52806 -20.62909 -20.39864 -18.98812 -18.82976 -17.24768 -16.76881 -16.64663 -16.20849 -15.73193 -14.83348 -14.80429 -14.59959 -13.96776 -13.82612 -13.53673 -13.41299 -13.29815 -13.24495 -12.97298 -12.74520 -12.58458 -12.27182 -12.18277 -12.15169 -11.86222 -11.68416 -11.24562 -11.16495 -10.94612 -10.92087 -10.86005 -10.68663 -10.59429 -10.20635 -10.08063 -9.96767 -9.80362 -9.69499 -9.28764 -9.19341 -8.45490 -8.40304 -6.49100 -5.71688 -3.19733 0.53997 1.87165 2.03125 2.68590 3.16872 3.30470 3.40743 3.48371 3.50959 3.56734 4.05594 4.23588 4.33276 4.42322 4.55242 4.64854 4.78759 5.03403 5.09745 5.27871 5.35671 5.38580 5.43474 5.47784 5.49153 5.54090 5.65583 5.73835 5.76266 5.83514 5.88185 5.99999 6.01591 6.23155 6.31935 6.36767 6.48152 6.63284 6.80208 6.84468 6.95306 7.00048 7.10109 7.15794 7.35715 7.47378 7.71200 7.73294 7.88134 8.56976 9.30396 9.92446 10.53952 11.36254 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021403 B = 0.002330 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.907724 B =12015.771429 C =12710.855042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.085 3.915 3 N -0.478 5.478 4 C 0.247 3.753 5 C -0.075 4.075 6 C -0.162 4.162 7 C -0.156 4.156 8 O -0.200 6.200 9 C -0.072 4.072 10 C 0.406 3.594 11 O -0.506 6.506 12 N -0.488 5.488 13 C 0.053 3.947 14 C -0.068 4.068 15 C -0.127 4.127 16 C 0.174 3.826 17 N -0.591 5.591 18 C -0.254 4.254 19 H 0.061 0.939 20 C 0.006 3.994 21 N -0.900 5.900 22 Si 0.900 3.100 23 H -0.277 1.277 24 H -0.290 1.290 25 H -0.289 1.289 26 C 0.147 3.853 27 C -0.126 4.126 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.103 0.897 31 H 0.150 0.850 32 H 0.104 0.896 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.102 0.898 36 H 0.401 0.599 37 H 0.053 0.947 38 H 0.085 0.915 39 H 0.058 0.942 40 H 0.051 0.949 41 H 0.057 0.943 42 H 0.075 0.925 43 H 0.015 0.985 44 H 0.252 0.748 45 H 0.014 0.986 46 H 0.052 0.948 47 H 0.047 0.953 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.257 10.563 -10.227 27.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.040 4.040 3 N -0.208 5.208 4 C 0.041 3.959 5 C -0.094 4.094 6 C -0.200 4.200 7 C -0.194 4.194 8 O -0.088 6.088 9 C -0.125 4.125 10 C 0.180 3.820 11 O -0.301 6.301 12 N -0.223 5.223 13 C -0.075 4.075 14 C -0.087 4.087 15 C -0.166 4.166 16 C 0.049 3.951 17 N -0.315 5.315 18 C -0.384 4.384 19 H 0.079 0.921 20 C -0.193 4.193 21 N -0.543 5.543 22 Si 0.730 3.270 23 H -0.202 1.202 24 H -0.217 1.217 25 H -0.215 1.215 26 C 0.020 3.980 27 C -0.166 4.166 28 H 0.104 0.896 29 H 0.091 0.909 30 H 0.122 0.878 31 H 0.167 0.833 32 H 0.122 0.878 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.120 0.880 36 H 0.254 0.746 37 H 0.072 0.928 38 H 0.103 0.897 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.093 0.907 43 H 0.033 0.967 44 H 0.062 0.938 45 H 0.032 0.968 46 H 0.071 0.929 47 H 0.066 0.934 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 21.752 11.083 -10.262 26.482 hybrid contribution 0.454 -1.131 0.180 1.232 sum 22.206 9.952 -10.083 26.340 Atomic orbital electron populations 1.20441 0.84610 1.04102 1.04507 1.22079 0.98602 0.85861 0.97415 1.70327 1.00026 1.31261 1.19170 1.25178 0.94481 0.78174 0.98094 1.20328 0.84172 0.97605 1.07289 1.23138 0.95074 1.02008 0.99746 1.23173 1.00208 1.04295 0.91717 1.84257 1.29348 1.24103 1.71071 1.20843 0.81094 0.94105 1.16412 1.20278 0.86615 0.81294 0.93799 1.84987 1.21490 1.34993 1.88592 1.72875 1.07371 1.23010 1.19075 1.22199 0.98902 0.86127 1.00288 1.21041 0.96470 0.96267 0.94919 1.22145 0.95193 0.98200 1.01099 1.20681 0.98218 0.84849 0.91382 1.44003 1.01667 1.01506 1.84278 1.19153 0.87147 1.04704 1.27420 0.92094 1.25199 0.98846 0.99125 0.96120 1.70046 1.32379 1.22614 1.29277 0.86272 0.85576 0.77889 0.77313 1.20213 1.21737 1.21539 1.20876 0.89355 0.94610 0.93113 1.22039 0.99041 0.94529 1.00997 0.89589 0.90891 0.87819 0.83252 0.87769 0.87003 0.86863 0.87981 0.74616 0.92822 0.89719 0.92322 0.92993 0.92449 0.90701 0.96680 0.93755 0.96815 0.92901 0.93438 0.92271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.00 9.68 36.00 0.35 -0.65 16 2 C 0.09 1.14 7.16 -82.47 -0.59 0.55 16 3 N -0.48 -6.18 11.26 -7.08 -0.08 -6.26 16 4 C 0.25 2.59 7.81 -12.84 -0.10 2.49 16 5 C -0.08 -0.49 6.33 -91.78 -0.58 -1.07 16 6 C -0.16 -0.70 10.16 -26.73 -0.27 -0.97 16 7 C -0.16 -0.74 10.23 -26.73 -0.27 -1.01 16 8 O -0.20 -2.16 10.08 4.34 0.04 -2.11 16 9 C -0.07 -0.91 7.13 -36.75 -0.26 -1.17 16 10 C 0.41 5.37 7.96 -14.58 -0.12 5.25 16 11 O -0.51 -5.74 12.01 -17.68 -0.21 -5.95 16 12 N -0.49 -7.27 7.51 -59.42 -0.45 -7.71 16 13 C 0.05 0.82 5.73 -4.04 -0.02 0.79 16 14 C -0.07 -1.22 2.35 -90.56 -0.21 -1.43 16 15 C -0.13 -2.54 5.27 -26.59 -0.14 -2.68 16 16 C 0.17 4.32 5.26 -3.71 -0.02 4.30 16 17 N -0.59 -15.41 2.96 -172.32 -0.51 -15.92 16 18 C -0.25 -7.19 9.52 -15.06 -0.14 -7.34 16 19 H 0.06 1.70 7.88 -52.49 -0.41 1.29 16 20 C 0.01 0.18 4.91 -17.43 -0.09 0.10 16 21 N -0.90 -26.89 11.55 55.49 0.64 -26.25 16 22 Si 0.90 22.14 29.58 -169.99 -5.03 17.11 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 C 0.15 3.24 6.52 -3.71 -0.02 3.22 16 27 C -0.13 -2.30 5.36 -26.61 -0.14 -2.44 16 28 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.10 1.36 6.54 -51.93 -0.34 1.02 16 31 H 0.15 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.10 0.49 7.95 -51.93 -0.41 0.08 16 33 H 0.11 0.28 8.14 -51.93 -0.42 -0.15 16 34 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.40 2.73 8.50 45.56 0.39 3.12 16 37 H 0.05 0.80 6.74 -51.93 -0.35 0.45 16 38 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.06 1.08 7.72 -51.93 -0.40 0.68 16 42 H 0.07 2.06 6.48 -51.92 -0.34 1.72 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.25 7.25 8.31 -40.82 -0.34 6.92 16 45 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.05 1.14 7.93 -51.93 -0.41 0.73 16 47 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 48 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 391.55 15.07 5.90 5.90 Total: -1.00 -33.37 391.55 -9.24 -42.61 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -6.91 Total: 0.65 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: -2.64 Total: -2.06 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: -0.40 Total: -56.14 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: -0.17 Total: -8.07 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.03 Total: 17.11 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.37 -9.24 -42.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000329440399.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.011 kcal (2) G-P(sol) polarization free energy of solvation -33.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds