Wall clock time and date at job start Tue Mar 31 2020 17:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.33855 * 126.26266 * 2 1 4 4 C 1.30524 * 108.96587 * 180.02562 * 3 2 1 5 5 C 1.50698 * 125.44463 * 180.02562 * 4 3 2 6 6 C 1.52995 * 117.49902 * 188.62290 * 5 4 3 7 7 C 1.53000 * 117.49766 * 119.99966 * 5 4 3 8 8 O 1.33783 * 109.10980 * 359.73419 * 4 3 2 9 9 C 1.35268 * 107.68877 * 0.42998 * 8 4 3 10 10 C 1.47087 * 126.61574 * 179.83672 * 9 8 4 11 11 O 1.35328 * 120.00432 * 3.95009 * 10 9 8 12 12 N 1.30388 * 119.99799 * 183.94567 * 10 9 8 13 13 C 1.46500 * 119.99765 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.47188 * 115.00308 * 13 12 10 15 15 C 1.53075 * 109.45330 * 64.78421 * 14 13 12 16 16 C 1.53195 * 109.29368 * 181.24447 * 15 14 13 17 17 N 1.46922 * 108.89313 * 305.57609 * 16 15 14 18 18 C 1.36937 * 120.63389 * 233.51469 * 17 16 15 19 19 H 1.08000 * 120.00110 * 145.97305 * 18 17 16 20 20 C 1.38811 * 119.99955 * 325.97687 * 18 17 16 21 21 N 1.31613 * 120.00027 * 344.67528 * 20 18 17 22 22 Si 1.86804 * 120.00140 * 164.67824 * 20 18 17 23 23 H 1.48505 * 109.46618 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47398 * 119.99660 * 22 20 18 25 25 H 1.48500 * 109.47045 * 240.00153 * 22 20 18 26 26 C 1.46932 * 118.73974 * 53.53968 * 17 16 15 27 27 C 1.53043 * 109.46317 * 184.99696 * 14 13 12 28 28 H 1.09004 * 109.46500 * 263.68278 * 1 2 3 29 29 H 1.08993 * 109.47226 * 23.67815 * 1 2 3 30 30 H 1.09002 * 109.46978 * 143.68709 * 1 2 3 31 31 H 1.08996 * 115.54981 * 334.33538 * 5 4 3 32 32 H 1.08998 * 117.50075 * 359.97438 * 6 5 4 33 33 H 1.08995 * 117.50185 * 145.02072 * 6 5 4 34 34 H 1.08999 * 117.50176 * 214.98298 * 7 5 4 35 35 H 1.08998 * 117.50079 * 0.02562 * 7 5 4 36 36 H 0.96702 * 113.99541 * 5.36300 * 11 10 9 37 37 H 1.08995 * 109.47243 * 355.00006 * 13 12 10 38 38 H 1.09005 * 109.47008 * 235.00132 * 13 12 10 39 39 H 1.09003 * 109.45913 * 304.97297 * 14 13 12 40 40 H 1.09000 * 109.38875 * 61.37004 * 15 14 13 41 41 H 1.09000 * 109.62251 * 301.26213 * 15 14 13 42 42 H 1.09008 * 109.58481 * 185.72269 * 16 15 14 43 43 H 1.08997 * 109.58584 * 65.43785 * 16 15 14 44 44 H 0.97007 * 120.00280 * 179.97438 * 21 20 18 45 45 H 1.09003 * 109.58169 * 66.17483 * 26 17 16 46 46 H 1.08994 * 109.58684 * 186.45702 * 26 17 16 47 47 H 1.09005 * 109.49240 * 58.66205 * 27 14 13 48 48 H 1.09002 * 109.49548 * 298.56536 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2987 1.0793 0.0000 4 6 3.5449 0.6912 -0.0006 5 6 4.7443 1.6036 -0.0002 6 6 6.1188 0.9635 -0.2044 7 6 5.7177 1.4903 1.1748 8 8 3.5872 -0.6459 0.0049 9 6 2.3122 -1.0975 -0.0006 10 6 1.8794 -2.5033 -0.0010 11 8 2.7972 -3.4940 0.0854 12 7 0.6113 -2.7949 -0.0844 13 6 0.1802 -4.1951 -0.0842 14 6 -0.6434 -4.4749 1.1745 15 6 -1.9318 -3.6494 1.1347 16 6 -2.7387 -3.9087 2.4108 17 7 -2.9501 -5.3555 2.5544 18 6 -4.2108 -5.8634 2.7210 19 1 -4.4658 -6.8246 2.2998 20 6 -5.1611 -5.1427 3.4312 21 7 -4.7895 -4.1356 4.1927 22 14 -6.9674 -5.6022 3.3061 23 1 -7.1209 -6.7619 2.3912 24 1 -7.4811 -5.9618 4.6522 25 1 -7.7362 -4.4481 2.7749 26 6 -1.7829 -6.2472 2.5163 27 6 -0.9882 -5.9647 1.2375 28 1 -0.3632 -0.1131 1.0215 29 1 -0.3633 0.9411 -0.4127 30 1 -0.3633 -0.8281 -0.6086 31 1 4.5818 2.5939 -0.4254 32 1 6.1557 -0.1176 -0.3386 33 1 6.8609 1.5326 -0.7643 34 1 6.1958 2.4061 1.5224 35 1 5.4907 0.7557 1.9474 36 1 3.7015 -3.1812 0.2255 37 1 1.0553 -4.8447 -0.0977 38 1 -0.4291 -4.3878 -0.9673 39 1 -0.0648 -4.1984 2.0559 40 1 -2.5217 -3.9410 0.2657 41 1 -1.6857 -2.5896 1.0689 42 1 -3.7024 -3.4037 2.3428 43 1 -2.1890 -3.5323 3.2735 44 1 -5.4536 -3.6317 4.6887 45 1 -1.1530 -6.0619 3.3864 46 1 -2.1157 -7.2851 2.5205 47 1 -0.0691 -6.5508 1.2434 48 1 -1.5880 -6.2363 0.3689 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000329440399.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:21 Heat of formation + Delta-G solvation = 12.765735 kcal Electronic energy + Delta-G solvation = -28583.866990 eV Core-core repulsion = 24641.111392 eV Total energy + Delta-G solvation = -3942.755597 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.61155 -40.19333 -39.20469 -38.17638 -36.68981 -36.07429 -34.59686 -33.03326 -31.99590 -31.50279 -29.30858 -28.16721 -26.39730 -25.07754 -23.79354 -23.41372 -23.17400 -22.82092 -21.66895 -21.36662 -20.68816 -19.77319 -18.68598 -18.10898 -17.38614 -17.18446 -16.85035 -16.49133 -15.96632 -15.52846 -15.37507 -15.29076 -15.24816 -14.76716 -14.55046 -14.25244 -14.17353 -14.10387 -13.88406 -13.51429 -13.33251 -13.12491 -12.97420 -12.75600 -12.61077 -12.56145 -12.46124 -12.36754 -11.96804 -11.89043 -11.81858 -11.74210 -11.63347 -11.54656 -11.28046 -11.16702 -10.73156 -10.58930 -10.49107 -9.46064 -8.60105 -7.87259 -5.39895 -0.38495 0.99579 1.13328 1.45055 1.46468 1.57836 1.69222 2.45270 2.50456 2.67958 2.87100 3.26632 3.29200 3.59802 3.69627 3.73483 3.75398 3.92364 3.96215 4.01457 4.13438 4.21898 4.41287 4.51486 4.56906 4.60055 4.68206 4.74113 4.75682 4.78675 4.84081 4.85904 4.89248 4.96625 4.99739 5.04769 5.07662 5.17932 5.20997 5.32438 5.35471 5.39302 5.42182 5.52209 5.66796 5.75886 6.34260 6.42117 6.45061 6.69920 7.15879 7.85357 8.41756 9.18547 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021403 B = 0.002330 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.907724 B =12015.771429 C =12710.855042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.072 3.928 3 N -0.510 5.510 4 C 0.259 3.741 5 C -0.098 4.098 6 C -0.146 4.146 7 C -0.149 4.149 8 O -0.193 6.193 9 C -0.085 4.085 10 C 0.421 3.579 11 O -0.506 6.506 12 N -0.518 5.518 13 C 0.066 3.934 14 C -0.060 4.060 15 C -0.110 4.110 16 C 0.183 3.817 17 N -0.610 5.610 18 C -0.266 4.266 19 H 0.064 0.936 20 C -0.049 4.049 21 N -0.935 5.935 22 Si 0.968 3.032 23 H -0.264 1.264 24 H -0.290 1.290 25 H -0.289 1.289 26 C 0.141 3.859 27 C -0.114 4.114 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.164 0.836 32 H 0.100 0.900 33 H 0.136 0.864 34 H 0.135 0.865 35 H 0.092 0.908 36 H 0.420 0.580 37 H 0.063 0.937 38 H 0.089 0.911 39 H 0.044 0.956 40 H 0.050 0.950 41 H 0.066 0.934 42 H 0.040 0.960 43 H -0.013 1.013 44 H 0.250 0.750 45 H 0.005 0.995 46 H 0.055 0.945 47 H 0.079 0.921 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.541 10.514 -11.688 29.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.052 4.052 3 N -0.239 5.239 4 C 0.054 3.946 5 C -0.117 4.117 6 C -0.183 4.183 7 C -0.187 4.187 8 O -0.080 6.080 9 C -0.138 4.138 10 C 0.196 3.804 11 O -0.304 6.304 12 N -0.254 5.254 13 C -0.062 4.062 14 C -0.079 4.079 15 C -0.149 4.149 16 C 0.058 3.942 17 N -0.334 5.334 18 C -0.396 4.396 19 H 0.081 0.919 20 C -0.244 4.244 21 N -0.580 5.580 22 Si 0.796 3.204 23 H -0.189 1.189 24 H -0.217 1.217 25 H -0.215 1.215 26 C 0.016 3.984 27 C -0.153 4.153 28 H 0.095 0.905 29 H 0.100 0.900 30 H 0.116 0.884 31 H 0.181 0.819 32 H 0.119 0.881 33 H 0.155 0.845 34 H 0.153 0.847 35 H 0.110 0.890 36 H 0.277 0.723 37 H 0.081 0.919 38 H 0.107 0.893 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.084 0.916 42 H 0.059 0.941 43 H 0.005 0.995 44 H 0.059 0.941 45 H 0.023 0.977 46 H 0.074 0.926 47 H 0.098 0.902 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 24.082 11.018 -11.738 28.968 hybrid contribution -0.070 -1.047 0.685 1.253 sum 24.012 9.972 -11.054 28.252 Atomic orbital electron populations 1.20367 0.84705 1.04317 1.03824 1.22248 0.98968 0.86501 0.97476 1.70340 1.01080 1.31452 1.21037 1.26104 0.95088 0.78303 0.95156 1.20687 0.83680 0.97684 1.09665 1.23277 0.93554 1.02086 0.99387 1.23290 0.98877 1.05066 0.91432 1.84270 1.28363 1.24343 1.71073 1.20735 0.81684 0.93801 1.17574 1.20232 0.86648 0.81652 0.91918 1.84944 1.22708 1.34611 1.88103 1.72879 1.08518 1.22422 1.21582 1.21948 0.98738 0.86965 0.98578 1.20905 0.95340 0.95585 0.96072 1.21901 0.95627 0.99344 0.97988 1.20476 0.96765 0.84308 0.92700 1.44284 1.02324 1.02253 1.84553 1.19490 0.88438 1.04795 1.26926 0.91885 1.26010 1.03095 0.99321 0.96018 1.70201 1.33533 1.23884 1.30399 0.85201 0.80173 0.77795 0.77236 1.18855 1.21740 1.21543 1.21048 0.88417 0.94042 0.94928 1.21889 0.99731 0.95131 0.98561 0.90514 0.90044 0.88368 0.81902 0.88110 0.84547 0.84678 0.88956 0.72323 0.91872 0.89305 0.93751 0.93137 0.91555 0.94131 0.99490 0.94110 0.97680 0.92635 0.90248 0.91993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.92 9.68 71.23 0.69 -1.23 16 2 C 0.07 1.93 7.16 41.76 0.30 2.22 16 3 N -0.51 -12.96 11.26 -291.07 -3.28 -16.24 16 4 C 0.26 5.14 7.81 88.30 0.69 5.83 16 5 C -0.10 -1.06 6.33 -11.54 -0.07 -1.13 16 6 C -0.15 -0.81 10.16 30.59 0.31 -0.50 16 7 C -0.15 -1.02 10.23 30.59 0.31 -0.70 16 8 O -0.19 -3.89 10.08 -7.37 -0.07 -3.96 16 9 C -0.08 -2.08 7.13 24.10 0.17 -1.90 16 10 C 0.42 10.61 7.96 87.23 0.69 11.30 16 11 O -0.51 -10.38 12.01 -86.16 -1.04 -11.41 16 12 N -0.52 -14.95 7.51 -455.89 -3.43 -18.38 16 13 C 0.07 1.92 5.73 86.38 0.49 2.42 16 14 C -0.06 -2.10 2.35 -10.76 -0.03 -2.12 16 15 C -0.11 -4.44 5.27 30.68 0.16 -4.28 16 16 C 0.18 9.45 5.26 86.36 0.45 9.91 16 17 N -0.61 -32.47 2.96 -699.10 -2.07 -34.54 16 18 C -0.27 -15.28 9.52 84.03 0.80 -14.48 16 19 H 0.06 3.53 7.88 -2.91 -0.02 3.50 16 20 C -0.05 -2.82 4.91 84.86 0.42 -2.41 16 21 N -0.93 -57.79 11.55 21.65 0.25 -57.54 16 22 Si 0.97 46.24 29.58 68.60 2.03 48.27 16 23 H -0.26 -11.94 7.11 99.48 0.71 -11.24 16 24 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 25 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 26 C 0.14 6.21 6.52 86.36 0.56 6.77 16 27 C -0.11 -3.96 5.36 30.67 0.16 -3.80 16 28 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.10 2.61 6.54 -2.39 -0.02 2.60 16 31 H 0.16 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.10 0.67 7.95 -2.39 -0.02 0.65 16 33 H 0.14 0.13 8.14 -2.39 -0.02 0.11 16 34 H 0.14 0.35 8.14 -2.39 -0.02 0.33 16 35 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.42 4.71 8.50 -74.06 -0.63 4.08 16 37 H 0.06 1.72 6.74 -2.39 -0.02 1.70 16 38 H 0.09 2.50 8.14 -2.38 -0.02 2.49 16 39 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.05 2.05 8.14 -2.39 -0.02 2.04 16 41 H 0.07 2.55 7.72 -2.39 -0.02 2.53 16 42 H 0.04 2.33 6.48 -2.38 -0.02 2.32 16 43 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 44 H 0.25 14.85 8.31 -92.70 -0.77 14.08 16 45 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 46 H 0.06 2.37 7.93 -2.39 -0.02 2.35 16 47 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 48 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -73.78 391.55 -1.14 -74.92 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: 0.34 Total: 12.99 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: 6.12 Total: 5.89 kcal Atomic # 7 Polarization: -118.17 SS G_CDS: -8.52 Total: -126.69 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -1.11 Total: -15.38 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -73.78 -1.14 -74.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000329440399.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.684 kcal (2) G-P(sol) polarization free energy of solvation -73.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds