Wall clock time and date at job start Tue Mar 31 2020 17:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29938 * 125.37598 * 2 1 4 4 C 1.36062 * 108.47435 * 180.18643 * 3 2 1 5 5 C 1.47415 * 126.45002 * 179.85549 * 4 3 2 6 6 O 1.21615 * 120.00399 * 188.07729 * 5 4 3 7 7 N 1.34779 * 119.99656 * 8.07544 * 5 4 3 8 8 C 1.46925 * 120.63420 * 6.56525 * 7 5 4 9 9 C 1.53191 * 108.77548 * 126.36281 * 8 7 5 10 10 C 1.53042 * 109.30913 * 54.64189 * 9 8 7 11 11 C 1.53036 * 109.53625 * 298.62822 * 10 9 8 12 12 H 1.09004 * 109.50283 * 301.38250 * 11 10 9 13 13 C 1.53010 * 109.49564 * 181.31849 * 11 10 9 14 14 H 1.08994 * 109.99457 * 305.10378 * 13 11 10 15 15 C 1.54337 * 109.98942 * 184.06974 * 13 11 10 16 16 C 1.55157 * 103.02111 * 218.66785 * 15 13 11 17 17 C 1.54914 * 101.58278 * 35.30403 * 16 15 13 18 18 N 1.47019 * 109.88056 * 66.20430 * 13 11 10 19 19 C 1.36938 * 125.64730 * 298.38713 * 18 13 11 20 20 H 1.07997 * 120.00043 * 332.98742 * 19 18 13 21 21 C 1.38811 * 119.99738 * 152.97732 * 19 18 13 22 22 N 1.31616 * 120.00515 * 332.44876 * 21 19 18 23 23 Si 1.86800 * 119.99836 * 152.44371 * 21 19 18 24 24 H 1.48498 * 109.47258 * 90.00479 * 23 21 19 25 25 H 1.48506 * 109.47146 * 330.00215 * 23 21 19 26 26 H 1.48501 * 109.47207 * 210.00239 * 23 21 19 27 27 C 1.46931 * 120.62775 * 186.54062 * 7 5 4 28 28 C 1.36094 * 107.10273 * 359.59789 * 4 3 2 29 29 O 1.34046 * 125.38007 * 179.74040 * 2 1 3 30 30 H 1.09003 * 109.47027 * 180.28005 * 1 2 3 31 31 H 1.09006 * 109.47609 * 300.27803 * 1 2 3 32 32 H 1.08994 * 109.47410 * 60.28238 * 1 2 3 33 33 H 1.09001 * 109.58199 * 6.58365 * 8 7 5 34 34 H 1.08998 * 109.58692 * 246.15714 * 8 7 5 35 35 H 1.09000 * 109.50517 * 294.68869 * 9 8 7 36 36 H 1.09000 * 109.52517 * 174.59993 * 9 8 7 37 37 H 1.09009 * 109.45785 * 178.61270 * 10 9 8 38 38 H 1.08993 * 109.45387 * 58.64503 * 10 9 8 39 39 H 1.08995 * 110.85252 * 100.19541 * 15 13 11 40 40 H 1.08999 * 110.51443 * 336.97702 * 15 13 11 41 41 H 1.09003 * 111.00159 * 277.23527 * 16 15 13 42 42 H 1.08997 * 111.04224 * 153.39232 * 16 15 13 43 43 H 1.08998 * 110.36807 * 204.15654 * 17 16 15 44 44 H 1.09006 * 110.36390 * 81.83098 * 17 16 15 45 45 H 0.97009 * 119.99733 * 354.31269 * 22 21 19 46 46 H 1.09000 * 109.58564 * 113.85192 * 27 7 5 47 47 H 1.08994 * 109.59160 * 353.41742 * 27 7 5 48 48 H 1.07999 * 126.52207 * 180.27300 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0595 0.0000 4 6 3.5611 0.6639 -0.0042 5 6 4.7438 1.5438 -0.0087 6 8 5.8537 1.0702 -0.1602 7 7 4.5952 2.8734 0.1551 8 6 3.2818 3.4452 0.4816 9 6 3.4194 4.3106 1.7382 10 6 4.5205 5.3505 1.5184 11 6 5.8536 4.6401 1.2728 12 1 6.0910 4.0063 2.1273 13 6 6.9598 5.6806 1.0858 14 1 6.6883 6.3743 0.2902 15 6 8.2897 4.9797 0.7363 16 6 9.3395 5.8113 1.5198 17 6 8.5512 6.1792 2.8016 18 7 7.1711 6.4167 2.3408 19 6 6.2386 7.1903 2.9789 20 1 5.4467 7.6583 2.4132 21 6 6.3112 7.3726 4.3531 22 7 6.8675 6.4514 5.1108 23 14 5.6194 8.9257 5.1270 24 1 4.1936 8.7095 5.4811 25 1 5.7249 10.0491 4.1616 26 1 6.3898 9.2530 6.3536 27 6 5.7437 3.7784 0.0110 28 6 3.5659 -0.6970 0.0024 29 8 2.2831 -1.0929 0.0050 30 1 -0.3633 -1.0277 0.0050 31 1 -0.3634 0.5182 0.8875 32 1 -0.3634 0.5094 -0.8924 33 1 2.5694 2.6415 0.6678 34 1 2.9340 4.0595 -0.3489 35 1 3.6794 3.6795 2.5880 36 1 2.4750 4.8174 1.9368 37 1 4.6038 5.9836 2.4019 38 1 4.2719 5.9652 0.6533 39 1 8.4828 5.0260 -0.3354 40 1 8.2796 3.9464 1.0831 41 1 9.6224 6.7058 0.9649 42 1 10.2160 5.2092 1.7595 43 1 8.9613 7.0826 3.2529 44 1 8.5769 5.3535 3.5128 45 1 7.1522 5.6099 4.7211 46 1 5.5966 4.4199 -0.8579 47 1 6.6556 3.1946 -0.1134 48 1 4.4361 -1.3367 0.0055 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963288800.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:26 Heat of formation + Delta-G solvation = 14.742483 kcal Electronic energy + Delta-G solvation = -29978.775775 eV Core-core repulsion = 26036.105896 eV Total energy + Delta-G solvation = -3942.669879 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.70170 -39.95709 -38.21665 -36.48853 -35.23338 -32.90246 -32.69955 -32.30557 -31.02907 -29.15015 -28.18940 -26.91781 -25.58214 -24.44114 -23.32022 -22.65484 -21.80308 -20.62923 -19.98293 -19.41582 -19.09107 -17.67753 -17.19706 -17.14677 -16.67782 -15.82381 -15.41263 -14.83058 -14.49940 -14.31531 -14.16078 -13.94898 -13.63629 -13.57205 -13.52855 -13.25317 -13.07028 -12.90556 -12.67496 -12.52770 -12.12598 -11.91589 -11.62491 -11.52086 -11.29507 -10.84025 -10.67529 -10.62672 -10.41589 -10.23837 -10.21373 -10.18813 -10.05351 -9.84922 -9.63333 -9.45159 -9.31662 -9.22042 -8.37371 -8.27047 -6.81729 -6.03769 -3.16590 0.91779 1.76741 2.31158 3.03134 3.25380 3.49730 3.54981 3.62539 3.69698 4.47567 4.54161 4.59640 4.92904 4.97646 5.10690 5.17415 5.27109 5.32067 5.35138 5.41720 5.43883 5.48728 5.51776 5.62733 5.67171 5.74129 5.81282 5.88463 5.99848 6.06989 6.22339 6.27327 6.31217 6.35923 6.38345 6.46102 6.55410 6.58350 6.69670 6.86067 6.94135 7.03795 7.15387 7.20614 7.23119 7.38201 7.57516 7.94707 8.18930 8.54427 9.07435 9.84317 10.47784 11.23915 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015504 B = 0.003359 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.595123 B = 8334.521665 C = 9524.746971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.193 3.807 3 N -0.457 5.457 4 C -0.060 4.060 5 C 0.595 3.405 6 O -0.545 6.545 7 N -0.584 5.584 8 C 0.082 3.918 9 C -0.131 4.131 10 C -0.125 4.125 11 C -0.096 4.096 12 H 0.066 0.934 13 C 0.166 3.834 14 H 0.034 0.966 15 C -0.129 4.129 16 C -0.137 4.137 17 C 0.143 3.857 18 N -0.590 5.590 19 C -0.328 4.328 20 H 0.061 0.939 21 C -0.022 4.022 22 N -0.909 5.909 23 Si 1.062 2.938 24 H -0.295 1.295 25 H -0.292 1.292 26 H -0.287 1.287 27 C 0.113 3.887 28 C 0.008 3.992 29 O -0.197 6.197 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.128 0.872 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.067 0.933 37 H 0.113 0.887 38 H 0.045 0.955 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.045 0.955 44 H 0.025 0.975 45 H 0.270 0.730 46 H 0.063 0.937 47 H 0.088 0.912 48 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.762 -12.569 -11.575 20.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.015 4.015 3 N -0.188 5.188 4 C -0.180 4.180 5 C 0.382 3.618 6 O -0.424 6.424 7 N -0.315 5.315 8 C -0.040 4.040 9 C -0.170 4.170 10 C -0.162 4.162 11 C -0.118 4.118 12 H 0.084 0.916 13 C 0.058 3.942 14 H 0.052 0.948 15 C -0.167 4.167 16 C -0.175 4.175 17 C 0.017 3.983 18 N -0.315 5.315 19 C -0.456 4.456 20 H 0.079 0.921 21 C -0.226 4.226 22 N -0.548 5.548 23 Si 0.891 3.109 24 H -0.222 1.222 25 H -0.219 1.219 26 H -0.213 1.213 27 C -0.009 4.009 28 C -0.066 4.066 29 O -0.084 6.084 30 H 0.108 0.892 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.145 0.855 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.131 0.869 38 H 0.064 0.936 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.063 0.937 44 H 0.042 0.958 45 H 0.081 0.919 46 H 0.081 0.919 47 H 0.107 0.893 48 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -10.650 -11.283 -10.168 18.550 hybrid contribution 0.401 -1.499 -1.403 2.092 sum -10.249 -12.782 -11.571 20.058 Atomic orbital electron populations 1.20329 0.80884 1.04949 1.05447 1.26551 0.96767 0.78553 0.99624 1.70671 1.00981 1.28638 1.18525 1.21861 0.92018 0.93034 1.11066 1.16831 0.85973 0.81753 0.77283 1.90798 1.24721 1.74879 1.51988 1.47947 1.11333 1.05181 1.66991 1.22629 0.84324 0.99842 0.97253 1.21928 0.99863 0.98136 0.97027 1.21909 0.92456 0.97545 1.04337 1.21921 0.97335 0.96725 0.95779 0.91572 1.20986 0.91444 0.90879 0.90883 0.94820 1.22642 0.95967 0.99128 0.98991 1.22776 0.97148 0.99078 0.98509 1.21512 0.85180 0.98474 0.93115 1.44576 1.07924 1.54384 1.24597 1.19533 1.10027 1.24618 0.91430 0.92097 1.25788 1.00762 1.03414 0.92606 1.70726 1.40979 1.05857 1.37250 0.83597 0.75809 0.75736 0.75711 1.22215 1.21875 1.21278 1.21927 0.88480 0.91691 0.98799 1.25245 0.84714 0.95643 1.00991 1.84383 1.16781 1.37864 1.69337 0.89222 0.88128 0.88226 0.85475 0.92192 0.92350 0.91440 0.86932 0.93591 0.92169 0.91766 0.92036 0.92245 0.93703 0.95766 0.91906 0.91874 0.89330 0.75315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.28 10.51 36.01 0.38 0.10 16 2 C 0.19 1.85 8.30 -13.08 -0.11 1.74 16 3 N -0.46 -5.70 7.84 -7.66 -0.06 -5.76 16 4 C -0.06 -0.84 6.66 -83.02 -0.55 -1.39 16 5 C 0.59 9.99 7.68 -12.52 -0.10 9.89 16 6 O -0.55 -10.30 16.32 5.26 0.09 -10.21 16 7 N -0.58 -9.72 2.97 -174.03 -0.52 -10.24 16 8 C 0.08 1.23 6.10 -3.71 -0.02 1.21 16 9 C -0.13 -2.19 6.08 -26.61 -0.16 -2.35 16 10 C -0.13 -2.42 4.69 -26.69 -0.13 -2.55 16 11 C -0.10 -1.88 1.96 -90.49 -0.18 -2.06 16 12 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 13 C 0.17 3.41 2.82 -66.94 -0.19 3.22 16 14 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 15 C -0.13 -2.33 5.45 -24.89 -0.14 -2.47 16 16 C -0.14 -2.55 7.09 -24.58 -0.17 -2.72 16 17 C 0.14 3.33 5.66 -2.52 -0.01 3.32 16 18 N -0.59 -14.46 2.90 -162.56 -0.47 -14.93 16 19 C -0.33 -8.77 7.20 -15.06 -0.11 -8.87 16 20 H 0.06 1.63 7.16 -52.49 -0.38 1.26 16 21 C -0.02 -0.62 5.14 -17.43 -0.09 -0.71 16 22 N -0.91 -27.01 13.07 55.49 0.73 -26.29 16 23 Si 1.06 25.00 30.00 -169.99 -5.10 19.90 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 27 C 0.11 1.95 5.30 -3.71 -0.02 1.93 16 28 C 0.01 0.08 11.96 29.96 0.36 0.44 16 29 O -0.20 -1.97 10.73 6.54 0.07 -1.90 16 30 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.13 1.83 4.11 -59.80 -0.25 1.58 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.11 2.61 4.76 -51.92 -0.25 2.36 16 38 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.06 1.18 7.31 -51.93 -0.38 0.80 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.04 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.02 0.62 6.83 -51.93 -0.35 0.26 16 45 H 0.27 8.16 6.44 -40.82 -0.26 7.89 16 46 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.09 1.58 5.88 -51.93 -0.31 1.27 16 48 H 0.23 1.87 8.06 -52.49 -0.42 1.45 16 LS Contribution 372.29 15.07 5.61 5.61 Total: -1.00 -32.79 372.29 -8.20 -40.99 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -7.31 Total: 4.10 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -1.24 Total: -1.27 kcal Atomic # 7 Polarization: -56.90 SS G_CDS: -0.32 Total: -57.22 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.16 Total: -12.11 kcal Atomic # 14 Polarization: 25.00 SS G_CDS: -5.10 Total: 19.90 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.79 -8.20 -40.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963288800.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.733 kcal (2) G-P(sol) polarization free energy of solvation -32.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds