Wall clock time and date at job start Tue Mar 31 2020 17:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29938 * 125.37598 * 2 1 4 4 C 1.36062 * 108.47435 * 180.18643 * 3 2 1 5 5 C 1.47415 * 126.45002 * 179.85549 * 4 3 2 6 6 O 1.21615 * 120.00399 * 188.07729 * 5 4 3 7 7 N 1.34779 * 119.99656 * 8.07544 * 5 4 3 8 8 C 1.46925 * 120.63420 * 6.56525 * 7 5 4 9 9 C 1.53191 * 108.77548 * 126.36281 * 8 7 5 10 10 C 1.53042 * 109.30913 * 54.64189 * 9 8 7 11 11 C 1.53036 * 109.53625 * 298.62822 * 10 9 8 12 12 H 1.09004 * 109.50283 * 301.38250 * 11 10 9 13 13 C 1.53010 * 109.49564 * 181.31849 * 11 10 9 14 14 H 1.08994 * 109.99457 * 305.10378 * 13 11 10 15 15 C 1.54337 * 109.98942 * 184.06974 * 13 11 10 16 16 C 1.55157 * 103.02111 * 218.66785 * 15 13 11 17 17 C 1.54914 * 101.58278 * 35.30403 * 16 15 13 18 18 N 1.47019 * 109.88056 * 66.20430 * 13 11 10 19 19 C 1.36938 * 125.64730 * 298.38713 * 18 13 11 20 20 H 1.07997 * 120.00043 * 332.98742 * 19 18 13 21 21 C 1.38811 * 119.99738 * 152.97732 * 19 18 13 22 22 N 1.31616 * 120.00515 * 332.44876 * 21 19 18 23 23 Si 1.86800 * 119.99836 * 152.44371 * 21 19 18 24 24 H 1.48498 * 109.47258 * 90.00479 * 23 21 19 25 25 H 1.48506 * 109.47146 * 330.00215 * 23 21 19 26 26 H 1.48501 * 109.47207 * 210.00239 * 23 21 19 27 27 C 1.46931 * 120.62775 * 186.54062 * 7 5 4 28 28 C 1.36094 * 107.10273 * 359.59789 * 4 3 2 29 29 O 1.34046 * 125.38007 * 179.74040 * 2 1 3 30 30 H 1.09003 * 109.47027 * 180.28005 * 1 2 3 31 31 H 1.09006 * 109.47609 * 300.27803 * 1 2 3 32 32 H 1.08994 * 109.47410 * 60.28238 * 1 2 3 33 33 H 1.09001 * 109.58199 * 6.58365 * 8 7 5 34 34 H 1.08998 * 109.58692 * 246.15714 * 8 7 5 35 35 H 1.09000 * 109.50517 * 294.68869 * 9 8 7 36 36 H 1.09000 * 109.52517 * 174.59993 * 9 8 7 37 37 H 1.09009 * 109.45785 * 178.61270 * 10 9 8 38 38 H 1.08993 * 109.45387 * 58.64503 * 10 9 8 39 39 H 1.08995 * 110.85252 * 100.19541 * 15 13 11 40 40 H 1.08999 * 110.51443 * 336.97702 * 15 13 11 41 41 H 1.09003 * 111.00159 * 277.23527 * 16 15 13 42 42 H 1.08997 * 111.04224 * 153.39232 * 16 15 13 43 43 H 1.08998 * 110.36807 * 204.15654 * 17 16 15 44 44 H 1.09006 * 110.36390 * 81.83098 * 17 16 15 45 45 H 0.97009 * 119.99733 * 354.31269 * 22 21 19 46 46 H 1.09000 * 109.58564 * 113.85192 * 27 7 5 47 47 H 1.08994 * 109.59160 * 353.41742 * 27 7 5 48 48 H 1.07999 * 126.52207 * 180.27300 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0595 0.0000 4 6 3.5611 0.6639 -0.0042 5 6 4.7438 1.5438 -0.0087 6 8 5.8537 1.0702 -0.1602 7 7 4.5952 2.8734 0.1551 8 6 3.2818 3.4452 0.4816 9 6 3.4194 4.3106 1.7382 10 6 4.5205 5.3505 1.5184 11 6 5.8536 4.6401 1.2728 12 1 6.0910 4.0063 2.1273 13 6 6.9598 5.6806 1.0858 14 1 6.6883 6.3743 0.2902 15 6 8.2897 4.9797 0.7363 16 6 9.3395 5.8113 1.5198 17 6 8.5512 6.1792 2.8016 18 7 7.1711 6.4167 2.3408 19 6 6.2386 7.1903 2.9789 20 1 5.4467 7.6583 2.4132 21 6 6.3112 7.3726 4.3531 22 7 6.8675 6.4514 5.1108 23 14 5.6194 8.9257 5.1270 24 1 4.1936 8.7095 5.4811 25 1 5.7249 10.0491 4.1616 26 1 6.3898 9.2530 6.3536 27 6 5.7437 3.7784 0.0110 28 6 3.5659 -0.6970 0.0024 29 8 2.2831 -1.0929 0.0050 30 1 -0.3633 -1.0277 0.0050 31 1 -0.3634 0.5182 0.8875 32 1 -0.3634 0.5094 -0.8924 33 1 2.5694 2.6415 0.6678 34 1 2.9340 4.0595 -0.3489 35 1 3.6794 3.6795 2.5880 36 1 2.4750 4.8174 1.9368 37 1 4.6038 5.9836 2.4019 38 1 4.2719 5.9652 0.6533 39 1 8.4828 5.0260 -0.3354 40 1 8.2796 3.9464 1.0831 41 1 9.6224 6.7058 0.9649 42 1 10.2160 5.2092 1.7595 43 1 8.9613 7.0826 3.2529 44 1 8.5769 5.3535 3.5128 45 1 7.1522 5.6099 4.7211 46 1 5.5966 4.4199 -0.8579 47 1 6.6556 3.1946 -0.1134 48 1 4.4361 -1.3367 0.0055 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963288800.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:26 Heat of formation + Delta-G solvation = -6.638057 kcal Electronic energy + Delta-G solvation = -29979.702905 eV Core-core repulsion = 26036.105896 eV Total energy + Delta-G solvation = -3943.597009 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.53475 -41.32424 -39.81915 -37.97876 -36.14429 -34.83096 -34.03996 -33.13867 -32.49363 -31.04482 -28.93727 -28.46754 -26.86089 -26.37590 -24.56812 -24.02953 -22.73013 -22.14324 -21.54435 -20.99473 -20.44003 -19.35331 -18.52616 -18.02450 -17.73634 -17.24570 -16.87445 -16.26232 -15.98910 -15.67728 -15.46226 -15.43923 -15.07057 -14.79081 -14.69574 -14.55087 -14.13801 -14.06980 -13.88146 -13.68237 -13.51811 -13.32920 -13.27559 -12.77334 -12.61332 -12.46554 -12.35297 -12.17514 -11.92956 -11.92265 -11.87244 -11.81071 -11.56713 -11.46958 -11.41342 -11.11964 -10.68000 -10.39477 -10.12853 -9.67609 -8.88043 -8.20015 -5.30797 0.01180 0.87980 1.54604 1.57181 1.65423 1.82094 1.84684 2.10972 2.66143 2.79685 3.24956 3.43994 3.52162 3.74158 3.75591 3.87743 4.05046 4.09328 4.14619 4.16290 4.22480 4.33915 4.36279 4.44895 4.50750 4.55783 4.58978 4.68564 4.69848 4.74655 4.75230 4.78978 4.83392 4.93886 4.95892 5.07018 5.07246 5.10552 5.19280 5.29176 5.33914 5.38910 5.55909 5.59002 5.67825 5.86093 6.21430 6.38612 6.44799 6.92080 6.99050 7.77011 8.41841 9.05321 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015504 B = 0.003359 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.595123 B = 8334.521665 C = 9524.746971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.206 3.794 3 N -0.484 5.484 4 C -0.097 4.097 5 C 0.591 3.409 6 O -0.575 6.575 7 N -0.592 5.592 8 C 0.090 3.910 9 C -0.124 4.124 10 C -0.120 4.120 11 C -0.084 4.084 12 H 0.022 0.978 13 C 0.158 3.842 14 H 0.041 0.959 15 C -0.120 4.120 16 C -0.121 4.121 17 C 0.142 3.858 18 N -0.608 5.608 19 C -0.316 4.316 20 H 0.060 0.940 21 C -0.079 4.079 22 N -0.944 5.944 23 Si 1.110 2.890 24 H -0.283 1.283 25 H -0.275 1.275 26 H -0.295 1.295 27 C 0.123 3.877 28 C 0.027 3.973 29 O -0.193 6.193 30 H 0.113 0.887 31 H 0.111 0.889 32 H 0.115 0.885 33 H 0.141 0.859 34 H 0.076 0.924 35 H 0.033 0.967 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.096 0.904 40 H 0.057 0.943 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.019 0.981 44 H -0.006 1.006 45 H 0.251 0.749 46 H 0.083 0.917 47 H 0.082 0.918 48 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.634 -13.263 -14.000 23.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.003 4.003 3 N -0.215 5.215 4 C -0.215 4.215 5 C 0.379 3.621 6 O -0.456 6.456 7 N -0.322 5.322 8 C -0.032 4.032 9 C -0.162 4.162 10 C -0.158 4.158 11 C -0.105 4.105 12 H 0.041 0.959 13 C 0.052 3.948 14 H 0.058 0.942 15 C -0.157 4.157 16 C -0.160 4.160 17 C 0.017 3.983 18 N -0.333 5.333 19 C -0.445 4.445 20 H 0.078 0.922 21 C -0.276 4.276 22 N -0.586 5.586 23 Si 0.935 3.065 24 H -0.209 1.209 25 H -0.200 1.200 26 H -0.222 1.222 27 C 0.001 3.999 28 C -0.047 4.047 29 O -0.079 6.079 30 H 0.131 0.869 31 H 0.130 0.870 32 H 0.133 0.867 33 H 0.157 0.843 34 H 0.094 0.906 35 H 0.051 0.949 36 H 0.106 0.894 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.114 0.886 40 H 0.076 0.924 41 H 0.095 0.905 42 H 0.102 0.898 43 H 0.037 0.963 44 H 0.012 0.988 45 H 0.061 0.939 46 H 0.101 0.899 47 H 0.101 0.899 48 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -12.545 -11.969 -12.632 21.452 hybrid contribution 0.904 -1.368 -0.704 1.784 sum -11.641 -13.337 -13.337 22.164 Atomic orbital electron populations 1.20660 0.77389 1.06923 1.06620 1.27515 0.98220 0.77655 0.96882 1.70507 1.00549 1.30024 1.20413 1.21575 0.91861 0.93667 1.14386 1.17227 0.86629 0.81858 0.76348 1.90764 1.26129 1.75350 1.53367 1.48036 1.11521 1.05418 1.67179 1.22675 0.83945 1.00015 0.96524 1.21857 0.99687 0.97422 0.97244 1.21746 0.93436 0.97828 1.02741 1.21687 0.97159 0.96156 0.95534 0.95915 1.21176 0.93421 0.91125 0.89117 0.94154 1.22619 0.93966 0.98178 1.00983 1.22699 0.97379 1.00153 0.95733 1.21439 0.85673 0.96208 0.94999 1.44856 1.08183 1.54956 1.25305 1.19731 1.09689 1.23573 0.91466 0.92214 1.27054 1.01449 1.05358 0.93699 1.70856 1.44279 1.05977 1.37465 0.82942 0.75605 0.73039 0.74915 1.20921 1.20017 1.22173 1.21720 0.88969 0.91560 0.97674 1.25648 0.85697 0.94927 0.98443 1.84441 1.16382 1.37951 1.69159 0.86888 0.87029 0.86693 0.84264 0.90618 0.94856 0.89432 0.91125 0.92224 0.88593 0.92411 0.90527 0.89848 0.96288 0.98786 0.93939 0.89873 0.89922 0.73130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.34 10.51 71.24 0.75 0.41 16 2 C 0.21 3.39 8.30 88.39 0.73 4.13 16 3 N -0.48 -11.20 7.84 -293.04 -2.30 -13.50 16 4 C -0.10 -2.59 6.66 40.41 0.27 -2.32 16 5 C 0.59 19.67 7.68 86.66 0.67 20.33 16 6 O -0.58 -21.78 16.32 -4.08 -0.07 -21.85 16 7 N -0.59 -19.40 2.97 -822.77 -2.45 -21.85 16 8 C 0.09 2.61 6.10 86.36 0.53 3.14 16 9 C -0.12 -4.14 6.08 30.67 0.19 -3.95 16 10 C -0.12 -4.70 4.69 30.62 0.14 -4.56 16 11 C -0.08 -3.36 1.96 -10.71 -0.02 -3.38 16 12 H 0.02 1.09 8.14 -2.38 -0.02 1.07 16 13 C 0.16 6.52 2.82 45.35 0.13 6.64 16 14 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 15 C -0.12 -4.17 5.45 31.79 0.17 -4.00 16 16 C -0.12 -4.40 7.09 31.99 0.23 -4.18 16 17 C 0.14 6.92 5.66 86.86 0.49 7.41 16 18 N -0.61 -30.72 2.90 -668.21 -1.94 -32.66 16 19 C -0.32 -17.37 7.20 84.03 0.61 -16.77 16 20 H 0.06 3.26 7.16 -2.91 -0.02 3.24 16 21 C -0.08 -4.54 5.14 84.86 0.44 -4.10 16 22 N -0.94 -59.06 13.07 21.65 0.28 -58.78 16 23 Si 1.11 51.66 30.00 68.60 2.06 53.72 16 24 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 25 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 26 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 27 C 0.12 4.17 5.30 86.36 0.46 4.62 16 28 C 0.03 0.55 11.96 67.32 0.80 1.35 16 29 O -0.19 -3.36 10.73 0.49 0.01 -3.35 16 30 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 31 H 0.11 0.48 8.14 -2.38 -0.02 0.46 16 32 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.14 3.82 4.11 -17.93 -0.07 3.75 16 34 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 37 H 0.07 3.39 4.76 -2.38 -0.01 3.38 16 38 H 0.06 2.14 8.14 -2.39 -0.02 2.13 16 39 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 40 H 0.06 2.10 7.31 -2.39 -0.02 2.08 16 41 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 42 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 43 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 44 H -0.01 -0.31 6.83 -2.38 -0.02 -0.32 16 45 H 0.25 16.24 6.44 -92.70 -0.60 15.65 16 46 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 47 H 0.08 2.91 5.88 -2.39 -0.01 2.90 16 48 H 0.25 3.63 8.06 -2.91 -0.02 3.61 16 Total: -1.00 -75.89 372.29 3.25 -72.65 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: 1.07 Total: 20.83 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: 6.58 Total: 4.78 kcal Atomic # 7 Polarization: -120.38 SS G_CDS: -6.40 Total: -126.78 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -0.06 Total: -25.20 kcal Atomic # 14 Polarization: 51.66 SS G_CDS: 2.06 Total: 53.72 kcal Total: -75.89 3.25 -72.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963288800.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.008 kcal (2) G-P(sol) polarization free energy of solvation -75.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds