Wall clock time and date at job start Tue Mar 31 2020 18:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 109.47491 * 2 1 4 4 C 1.38018 * 119.51517 * 125.25530 * 3 2 1 5 5 C 1.39926 * 119.13256 * 180.25573 * 4 3 2 6 6 C 1.48160 * 120.89138 * 179.77523 * 5 4 3 7 7 O 1.21513 * 120.00368 * 359.71596 * 6 5 4 8 8 N 1.34783 * 119.99856 * 179.71256 * 6 5 4 9 9 C 1.46502 * 119.99579 * 179.97438 * 8 6 5 10 10 H 1.08996 * 109.50136 * 35.07002 * 9 8 6 11 11 C 1.53035 * 109.49847 * 274.99786 * 9 8 6 12 12 C 1.53041 * 109.54001 * 178.65426 * 11 9 8 13 13 C 1.53193 * 109.30945 * 61.36932 * 12 11 9 14 14 N 1.46932 * 108.77428 * 305.36377 * 13 12 11 15 15 C 1.36928 * 120.62883 * 233.58787 * 14 13 12 16 16 H 1.08001 * 119.99855 * 152.58140 * 15 14 13 17 17 C 1.38816 * 120.00302 * 332.58271 * 15 14 13 18 18 N 1.31625 * 119.99687 * 334.09603 * 17 15 14 19 19 Si 1.86795 * 120.00166 * 154.10048 * 17 15 14 20 20 H 1.48496 * 109.47183 * 179.97438 * 19 17 15 21 21 H 1.48501 * 109.47092 * 300.00089 * 19 17 15 22 22 H 1.48501 * 109.47421 * 59.99658 * 19 17 15 23 23 C 1.46921 * 118.73572 * 53.86298 * 14 13 12 24 24 H 1.09001 * 109.58789 * 65.93044 * 23 14 13 25 25 C 1.53003 * 109.58308 * 186.35070 * 23 14 13 26 26 C 1.39613 * 118.21294 * 359.49341 * 5 4 3 27 27 C 1.38845 * 118.95290 * 0.25678 * 26 5 4 28 28 O 1.35683 * 119.62195 * 179.97438 * 27 26 5 29 29 N 1.31880 * 119.51123 * 304.99709 * 3 2 1 30 30 H 1.08998 * 109.47094 * 300.00515 * 1 2 3 31 31 H 1.09006 * 109.47168 * 60.00038 * 1 2 3 32 32 H 1.08997 * 109.47320 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47094 * 239.99485 * 2 1 3 34 34 H 1.09006 * 109.46428 * 119.99886 * 2 1 3 35 35 H 1.08004 * 120.43266 * 0.02562 * 4 3 2 36 36 H 0.96996 * 119.99912 * 0.02562 * 8 6 5 37 37 H 1.09006 * 109.45942 * 58.63720 * 11 9 8 38 38 H 1.08998 * 109.45256 * 298.67238 * 11 9 8 39 39 H 1.08999 * 109.49582 * 301.41532 * 12 11 9 40 40 H 1.09001 * 109.52690 * 181.33441 * 12 11 9 41 41 H 1.09000 * 109.58243 * 185.58397 * 13 12 11 42 42 H 1.08998 * 109.70395 * 65.22183 * 13 12 11 43 43 H 0.96997 * 120.00244 * 354.51952 * 18 17 15 44 44 H 1.08994 * 109.47278 * 60.00082 * 25 23 14 45 45 H 1.09006 * 109.46769 * 180.02562 * 25 23 14 46 46 H 1.08994 * 109.47175 * 299.99845 * 25 23 14 47 47 H 1.08003 * 120.52164 * 180.23050 * 26 5 4 48 48 H 0.96697 * 113.99979 * 90.00807 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9127 1.8307 0.9808 5 6 3.3699 3.1531 0.9763 6 6 4.3115 3.6360 2.0134 7 8 4.6930 2.8817 2.8863 8 7 4.7449 4.9120 1.9885 9 6 5.6755 5.3895 3.0143 10 1 6.3586 4.5857 3.2884 11 6 4.8894 5.8353 4.2494 12 6 5.8625 6.3030 5.3341 13 6 6.6644 7.4999 4.8135 14 7 7.3078 7.1233 3.5473 15 6 8.6574 7.2798 3.3769 16 1 9.1928 6.6401 2.6909 17 6 9.3374 8.2606 4.0859 18 7 8.6986 9.3330 4.5035 19 14 11.1589 8.0584 4.4472 20 1 11.6454 9.2348 5.2118 21 1 11.3710 6.8254 5.2471 22 1 11.9085 7.9545 3.1695 23 6 6.4745 6.5813 2.4654 24 1 5.7897 7.3516 2.1107 25 6 7.3680 6.1156 1.3140 26 6 2.9197 4.0037 -0.0351 27 6 2.0380 3.5088 -0.9867 28 8 1.5914 4.3237 -1.9753 29 7 1.6284 2.2527 -0.9402 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5139 0.8901 35 1 3.2414 1.1407 1.7439 36 1 4.4401 5.5142 1.2919 37 1 4.3002 4.9992 4.6261 38 1 4.2245 6.6559 3.9798 39 1 6.5438 5.4904 5.5864 40 1 5.3036 6.5981 6.2222 41 1 7.4264 7.7742 5.5430 42 1 5.9967 8.3451 4.6468 43 1 7.7738 9.4767 4.2486 44 1 8.0468 5.3412 1.6712 45 1 6.7480 5.7143 0.5123 46 1 7.9458 6.9599 0.9381 47 1 3.2517 5.0306 -0.0764 48 1 2.1442 4.3189 -2.7688 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993603884.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:27 Heat of formation + Delta-G solvation = -29.879246 kcal Electronic energy + Delta-G solvation = -29002.963160 eV Core-core repulsion = 25058.358338 eV Total energy + Delta-G solvation = -3944.604822 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.14424 -39.70501 -37.96110 -37.51164 -34.74076 -34.27584 -32.86647 -32.44092 -31.75265 -29.82619 -29.06854 -26.50851 -25.44798 -24.92615 -23.99815 -22.77693 -21.76718 -20.99191 -20.34733 -19.61640 -18.87174 -17.44976 -17.22229 -16.96082 -15.99327 -15.90184 -15.55895 -15.13965 -14.81940 -14.69128 -14.39532 -14.22489 -13.89954 -13.69760 -13.47436 -13.44182 -13.23950 -12.66750 -12.57454 -12.35711 -12.17542 -11.95485 -11.78411 -11.43401 -11.39923 -11.33430 -11.16453 -10.78789 -10.49978 -10.46412 -10.30519 -10.18524 -10.15812 -10.05947 -9.95978 -9.69023 -9.26098 -9.19334 -8.89565 -8.39435 -6.96655 -6.11214 -3.27513 0.38057 0.59438 2.65172 2.99487 3.16262 3.46761 3.47360 3.51566 3.68716 4.05197 4.32114 4.55162 4.59090 4.61458 4.81016 4.86876 4.95131 5.10164 5.11058 5.21240 5.34919 5.35904 5.41665 5.49837 5.54928 5.58309 5.66364 5.75737 5.77624 5.87900 5.92301 6.03161 6.08098 6.16629 6.24634 6.32719 6.39559 6.51017 6.52739 6.60653 6.81171 6.89635 7.06441 7.08227 7.15864 7.47583 7.51616 7.96545 8.12634 8.52571 9.04307 9.79525 10.21736 11.17103 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022263 B = 0.002526 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.363506 B =11082.213202 C =11402.249618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.073 4.073 3 C 0.151 3.849 4 C -0.125 4.125 5 C -0.062 4.062 6 C 0.554 3.446 7 O -0.527 6.527 8 N -0.708 5.708 9 C 0.130 3.870 10 H 0.090 0.910 11 C -0.118 4.118 12 C -0.134 4.134 13 C 0.148 3.852 14 N -0.588 5.588 15 C -0.351 4.351 16 H 0.063 0.937 17 C -0.022 4.022 18 N -0.913 5.913 19 Si 1.062 2.938 20 H -0.286 1.286 21 H -0.293 1.293 22 H -0.293 1.293 23 C 0.169 3.831 24 H 0.026 0.974 25 C -0.134 4.134 26 C -0.162 4.162 27 C 0.313 3.687 28 O -0.479 6.479 29 N -0.487 5.487 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.152 0.848 36 H 0.396 0.604 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.061 0.939 40 H 0.055 0.945 41 H 0.082 0.918 42 H 0.018 0.982 43 H 0.269 0.731 44 H 0.056 0.944 45 H 0.037 0.963 46 H 0.064 0.936 47 H 0.146 0.854 48 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.196 -13.815 -10.549 22.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 C 0.014 3.986 4 C -0.146 4.146 5 C -0.073 4.073 6 C 0.339 3.661 7 O -0.404 6.404 8 N -0.358 5.358 9 C 0.025 3.975 10 H 0.108 0.892 11 C -0.157 4.157 12 C -0.174 4.174 13 C 0.022 3.978 14 N -0.313 5.313 15 C -0.480 4.480 16 H 0.081 0.919 17 C -0.224 4.224 18 N -0.553 5.553 19 Si 0.892 3.108 20 H -0.211 1.211 21 H -0.220 1.220 22 H -0.220 1.220 23 C 0.062 3.938 24 H 0.044 0.956 25 C -0.192 4.192 26 C -0.184 4.184 27 C 0.134 3.866 28 O -0.286 6.286 29 N -0.207 5.207 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.170 0.830 36 H 0.231 0.769 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.100 0.900 42 H 0.036 0.964 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.056 0.944 46 H 0.083 0.917 47 H 0.163 0.837 48 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -13.556 -13.726 -9.390 21.455 hybrid contribution -0.661 -0.009 -0.981 1.183 sum -14.217 -13.734 -10.371 22.323 Atomic orbital electron populations 1.21685 0.93853 1.01924 1.02798 1.20549 0.97246 0.89653 1.03691 1.21006 0.92564 0.95784 0.89292 1.22157 0.97234 0.95616 0.99615 1.20412 0.97195 0.94490 0.95192 1.18073 0.80904 0.82561 0.84531 1.90789 1.57280 1.55382 1.36923 1.46073 1.47271 1.11079 1.31357 1.21969 0.90027 0.98600 0.86931 0.89173 1.21773 0.98082 0.99979 0.95835 1.22053 0.97941 1.00668 0.96695 1.21027 0.95354 0.92523 0.88909 1.44130 1.04464 1.74450 1.08223 1.19942 0.82712 1.15634 1.29666 0.91948 1.25822 1.05669 0.91588 0.99347 1.70787 1.13591 1.23427 1.47511 0.83565 0.75244 0.75671 0.76346 1.21131 1.22007 1.21998 1.20627 0.92158 0.91478 0.89574 0.95613 1.21795 0.99352 1.01662 0.96365 1.22313 0.98166 1.01644 0.96283 1.18923 0.90858 0.86492 0.90314 1.84808 1.54947 1.61332 1.27531 1.66763 1.24419 1.03654 1.25903 0.92774 0.91547 0.92086 0.89588 0.89700 0.83028 0.76874 0.92815 0.92651 0.92047 0.92653 0.89974 0.96408 0.92033 0.92501 0.94434 0.91651 0.83677 0.73997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.77 37.16 0.36 -0.67 16 2 C -0.07 -0.54 6.33 -27.88 -0.18 -0.71 16 3 C 0.15 1.52 6.17 -82.65 -0.51 1.01 16 4 C -0.13 -1.38 9.27 -39.03 -0.36 -1.74 16 5 C -0.06 -0.74 5.91 -104.68 -0.62 -1.35 16 6 C 0.55 8.09 7.76 -12.18 -0.09 8.00 16 7 O -0.53 -9.49 16.11 5.35 0.09 -9.41 16 8 N -0.71 -9.88 4.56 -54.31 -0.25 -10.12 16 9 C 0.13 2.26 2.01 -67.59 -0.14 2.12 16 10 H 0.09 1.82 7.58 -51.93 -0.39 1.42 16 11 C -0.12 -2.04 5.46 -26.69 -0.15 -2.18 16 12 C -0.13 -2.53 6.08 -26.61 -0.16 -2.69 16 13 C 0.15 3.33 4.71 -3.71 -0.02 3.31 16 14 N -0.59 -13.87 2.85 -164.52 -0.47 -14.34 16 15 C -0.35 -9.23 8.52 -15.06 -0.13 -9.36 16 16 H 0.06 1.64 6.24 -52.49 -0.33 1.31 16 17 C -0.02 -0.60 4.66 -17.43 -0.08 -0.68 16 18 N -0.91 -26.46 12.42 55.49 0.69 -25.78 16 19 Si 1.06 24.66 29.99 -169.99 -5.10 19.56 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 23 C 0.17 3.27 3.05 -67.37 -0.21 3.07 16 24 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 25 C -0.13 -2.43 7.82 37.16 0.29 -2.14 16 26 C -0.16 -1.64 9.55 -38.84 -0.37 -2.02 16 27 C 0.31 3.27 7.74 -17.17 -0.13 3.14 16 28 O -0.48 -4.21 13.56 -18.75 -0.25 -4.46 16 29 N -0.49 -5.42 9.87 -9.60 -0.09 -5.51 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.55 7.94 -51.93 -0.41 0.14 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.49 7.86 -51.93 -0.41 0.08 16 35 H 0.15 1.57 7.62 -52.48 -0.40 1.17 16 36 H 0.40 4.51 6.74 -40.82 -0.28 4.23 16 37 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.08 2.09 6.31 -51.93 -0.33 1.76 16 42 H 0.02 0.41 7.88 -51.93 -0.41 0.00 16 43 H 0.27 7.83 6.77 -40.82 -0.28 7.55 16 44 H 0.06 1.10 7.46 -51.93 -0.39 0.71 16 45 H 0.04 0.55 7.82 -51.93 -0.41 0.14 16 46 H 0.06 1.28 7.60 -51.93 -0.39 0.88 16 47 H 0.15 1.18 6.53 -52.48 -0.34 0.84 16 48 H 0.40 1.52 9.06 45.56 0.41 1.93 16 LS Contribution 384.03 15.07 5.79 5.79 Total: -1.00 -32.68 384.03 -8.61 -41.29 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -6.53 Total: 5.86 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: -2.49 Total: -2.89 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: -0.12 Total: -55.75 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: -0.17 Total: -13.87 kcal Atomic # 14 Polarization: 24.66 SS G_CDS: -5.10 Total: 19.56 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.68 -8.61 -41.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993603884.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.415 kcal (2) G-P(sol) polarization free energy of solvation -32.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds