Wall clock time and date at job start Tue Mar 31 2020 18:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 109.47491 * 2 1 4 4 C 1.38018 * 119.51517 * 125.25530 * 3 2 1 5 5 C 1.39926 * 119.13256 * 180.25573 * 4 3 2 6 6 C 1.48160 * 120.89138 * 179.77523 * 5 4 3 7 7 O 1.21513 * 120.00368 * 359.71596 * 6 5 4 8 8 N 1.34783 * 119.99856 * 179.71256 * 6 5 4 9 9 C 1.46502 * 119.99579 * 179.97438 * 8 6 5 10 10 H 1.08996 * 109.50136 * 35.07002 * 9 8 6 11 11 C 1.53035 * 109.49847 * 274.99786 * 9 8 6 12 12 C 1.53041 * 109.54001 * 178.65426 * 11 9 8 13 13 C 1.53193 * 109.30945 * 61.36932 * 12 11 9 14 14 N 1.46932 * 108.77428 * 305.36377 * 13 12 11 15 15 C 1.36928 * 120.62883 * 233.58787 * 14 13 12 16 16 H 1.08001 * 119.99855 * 152.58140 * 15 14 13 17 17 C 1.38816 * 120.00302 * 332.58271 * 15 14 13 18 18 N 1.31625 * 119.99687 * 334.09603 * 17 15 14 19 19 Si 1.86795 * 120.00166 * 154.10048 * 17 15 14 20 20 H 1.48496 * 109.47183 * 179.97438 * 19 17 15 21 21 H 1.48501 * 109.47092 * 300.00089 * 19 17 15 22 22 H 1.48501 * 109.47421 * 59.99658 * 19 17 15 23 23 C 1.46921 * 118.73572 * 53.86298 * 14 13 12 24 24 H 1.09001 * 109.58789 * 65.93044 * 23 14 13 25 25 C 1.53003 * 109.58308 * 186.35070 * 23 14 13 26 26 C 1.39613 * 118.21294 * 359.49341 * 5 4 3 27 27 C 1.38845 * 118.95290 * 0.25678 * 26 5 4 28 28 O 1.35683 * 119.62195 * 179.97438 * 27 26 5 29 29 N 1.31880 * 119.51123 * 304.99709 * 3 2 1 30 30 H 1.08998 * 109.47094 * 300.00515 * 1 2 3 31 31 H 1.09006 * 109.47168 * 60.00038 * 1 2 3 32 32 H 1.08997 * 109.47320 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47094 * 239.99485 * 2 1 3 34 34 H 1.09006 * 109.46428 * 119.99886 * 2 1 3 35 35 H 1.08004 * 120.43266 * 0.02562 * 4 3 2 36 36 H 0.96996 * 119.99912 * 0.02562 * 8 6 5 37 37 H 1.09006 * 109.45942 * 58.63720 * 11 9 8 38 38 H 1.08998 * 109.45256 * 298.67238 * 11 9 8 39 39 H 1.08999 * 109.49582 * 301.41532 * 12 11 9 40 40 H 1.09001 * 109.52690 * 181.33441 * 12 11 9 41 41 H 1.09000 * 109.58243 * 185.58397 * 13 12 11 42 42 H 1.08998 * 109.70395 * 65.22183 * 13 12 11 43 43 H 0.96997 * 120.00244 * 354.51952 * 18 17 15 44 44 H 1.08994 * 109.47278 * 60.00082 * 25 23 14 45 45 H 1.09006 * 109.46769 * 180.02562 * 25 23 14 46 46 H 1.08994 * 109.47175 * 299.99845 * 25 23 14 47 47 H 1.08003 * 120.52164 * 180.23050 * 26 5 4 48 48 H 0.96697 * 113.99979 * 90.00807 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9127 1.8307 0.9808 5 6 3.3699 3.1531 0.9763 6 6 4.3115 3.6360 2.0134 7 8 4.6930 2.8817 2.8863 8 7 4.7449 4.9120 1.9885 9 6 5.6755 5.3895 3.0143 10 1 6.3586 4.5857 3.2884 11 6 4.8894 5.8353 4.2494 12 6 5.8625 6.3030 5.3341 13 6 6.6644 7.4999 4.8135 14 7 7.3078 7.1233 3.5473 15 6 8.6574 7.2798 3.3769 16 1 9.1928 6.6401 2.6909 17 6 9.3374 8.2606 4.0859 18 7 8.6986 9.3330 4.5035 19 14 11.1589 8.0584 4.4472 20 1 11.6454 9.2348 5.2118 21 1 11.3710 6.8254 5.2471 22 1 11.9085 7.9545 3.1695 23 6 6.4745 6.5813 2.4654 24 1 5.7897 7.3516 2.1107 25 6 7.3680 6.1156 1.3140 26 6 2.9197 4.0037 -0.0351 27 6 2.0380 3.5088 -0.9867 28 8 1.5914 4.3237 -1.9753 29 7 1.6284 2.2527 -0.9402 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5139 0.8901 35 1 3.2414 1.1407 1.7439 36 1 4.4401 5.5142 1.2919 37 1 4.3002 4.9992 4.6261 38 1 4.2245 6.6559 3.9798 39 1 6.5438 5.4904 5.5864 40 1 5.3036 6.5981 6.2222 41 1 7.4264 7.7742 5.5430 42 1 5.9967 8.3451 4.6468 43 1 7.7738 9.4767 4.2486 44 1 8.0468 5.3412 1.6712 45 1 6.7480 5.7143 0.5123 46 1 7.9458 6.9599 0.9381 47 1 3.2517 5.0306 -0.0764 48 1 2.1442 4.3189 -2.7688 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993603884.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:27 Heat of formation + Delta-G solvation = -53.812373 kcal Electronic energy + Delta-G solvation = -29004.000978 eV Core-core repulsion = 25058.358338 eV Total energy + Delta-G solvation = -3945.642641 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.03394 -40.89503 -39.40826 -38.28313 -36.22905 -35.15718 -34.31823 -33.59431 -33.18076 -30.94847 -30.34063 -28.05358 -26.91217 -26.17899 -24.94623 -23.75744 -23.07693 -22.57418 -21.49807 -21.05330 -19.85060 -18.94551 -18.30273 -18.11454 -17.03328 -16.83903 -16.62847 -16.36820 -16.19680 -15.88113 -15.61928 -15.47378 -15.16572 -14.98907 -14.97673 -14.90317 -14.32314 -14.10434 -13.55188 -13.36859 -13.07085 -13.02864 -12.97023 -12.81186 -12.78331 -12.57447 -12.37532 -12.08864 -11.96827 -11.95967 -11.93363 -11.84333 -11.73932 -11.45829 -11.09451 -11.05207 -10.57145 -10.46417 -10.16288 -9.93877 -8.92520 -8.20983 -5.34953 -0.50239 -0.16128 1.58950 1.65415 1.65938 1.82969 1.85027 2.41345 2.62760 2.67170 3.21888 3.28628 3.39177 3.52998 3.76906 3.81459 3.84514 3.90283 4.05574 4.12644 4.19970 4.23694 4.34287 4.38021 4.44210 4.48653 4.62893 4.65690 4.69742 4.77857 4.80419 4.89342 4.90922 4.99596 5.05212 5.06141 5.13384 5.17716 5.25739 5.27351 5.30408 5.35265 5.45154 5.51223 5.92393 6.34297 6.43557 6.53571 6.79155 6.98324 7.07580 7.80275 8.23325 9.05068 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022263 B = 0.002526 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.363506 B =11082.213202 C =11402.249618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.074 4.074 3 C 0.151 3.849 4 C -0.132 4.132 5 C -0.073 4.073 6 C 0.559 3.441 7 O -0.565 6.565 8 N -0.697 5.697 9 C 0.147 3.853 10 H 0.062 0.938 11 C -0.111 4.111 12 C -0.124 4.124 13 C 0.153 3.847 14 N -0.607 5.607 15 C -0.345 4.345 16 H 0.060 0.940 17 C -0.074 4.074 18 N -0.943 5.943 19 Si 1.107 2.893 20 H -0.294 1.294 21 H -0.285 1.285 22 H -0.276 1.276 23 C 0.166 3.834 24 H 0.036 0.964 25 C -0.126 4.126 26 C -0.156 4.156 27 C 0.312 3.688 28 O -0.485 6.485 29 N -0.501 5.501 30 H 0.045 0.955 31 H 0.052 0.948 32 H 0.079 0.921 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.153 0.847 36 H 0.412 0.588 37 H 0.059 0.941 38 H 0.069 0.931 39 H 0.047 0.953 40 H 0.077 0.923 41 H 0.046 0.954 42 H 0.012 0.988 43 H 0.255 0.745 44 H 0.039 0.961 45 H 0.076 0.924 46 H 0.046 0.954 47 H 0.166 0.834 48 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.462 -15.090 -12.075 24.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.112 4.112 3 C 0.014 3.986 4 C -0.153 4.153 5 C -0.083 4.083 6 C 0.346 3.654 7 O -0.444 6.444 8 N -0.348 5.348 9 C 0.040 3.960 10 H 0.080 0.920 11 C -0.150 4.150 12 C -0.164 4.164 13 C 0.027 3.973 14 N -0.332 5.332 15 C -0.475 4.475 16 H 0.078 0.922 17 C -0.271 4.271 18 N -0.585 5.585 19 Si 0.932 3.068 20 H -0.221 1.221 21 H -0.211 1.211 22 H -0.202 1.202 23 C 0.059 3.941 24 H 0.054 0.946 25 C -0.183 4.183 26 C -0.177 4.177 27 C 0.133 3.867 28 O -0.296 6.296 29 N -0.222 5.222 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.098 0.902 33 H 0.115 0.885 34 H 0.119 0.881 35 H 0.171 0.829 36 H 0.250 0.750 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.066 0.934 40 H 0.096 0.904 41 H 0.065 0.935 42 H 0.030 0.970 43 H 0.065 0.935 44 H 0.058 0.942 45 H 0.095 0.905 46 H 0.066 0.934 47 H 0.183 0.817 48 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -14.848 -15.012 -10.980 23.799 hybrid contribution -0.358 0.345 -0.606 0.784 sum -15.207 -14.667 -11.586 24.096 Atomic orbital electron populations 1.21656 0.93713 1.02837 1.01717 1.20675 0.97262 0.88229 1.05014 1.21377 0.91933 0.96800 0.88535 1.22265 0.97530 0.95451 1.00023 1.20176 0.97598 0.95287 0.95287 1.18401 0.80573 0.82020 0.84454 1.90774 1.58708 1.56300 1.38614 1.45812 1.46535 1.11416 1.31023 1.21462 0.90061 0.96653 0.87777 0.91957 1.21706 0.97643 1.00540 0.95080 1.21914 0.97828 0.98491 0.98123 1.20883 0.94510 0.93821 0.88067 1.44350 1.04341 1.74689 1.09815 1.20142 0.84287 1.14458 1.28596 0.92213 1.26974 1.08795 0.91445 0.99892 1.70893 1.13118 1.24914 1.49555 0.82948 0.71634 0.75368 0.76816 1.22056 1.21146 1.20152 1.20799 0.92245 0.92123 0.88906 0.94603 1.21708 0.99286 1.00429 0.96905 1.22428 0.97700 1.02257 0.95348 1.19054 0.90509 0.86444 0.90714 1.84766 1.55653 1.60874 1.28273 1.66851 1.24789 1.04184 1.26335 0.93550 0.92858 0.90216 0.88483 0.88136 0.82890 0.75011 0.92207 0.91259 0.93435 0.90439 0.93501 0.96953 0.93463 0.94163 0.90544 0.93442 0.81652 0.71504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.77 71.98 0.70 -1.06 16 2 C -0.07 -0.93 6.33 29.85 0.19 -0.74 16 3 C 0.15 2.77 6.17 42.50 0.26 3.04 16 4 C -0.13 -2.70 9.27 22.63 0.21 -2.49 16 5 C -0.07 -1.59 5.91 -19.90 -0.12 -1.71 16 6 C 0.56 15.44 7.76 86.88 0.67 16.12 16 7 O -0.56 -19.97 16.11 -3.76 -0.06 -20.03 16 8 N -0.70 -17.97 4.56 -444.04 -2.03 -20.00 16 9 C 0.15 4.93 2.01 45.21 0.09 5.02 16 10 H 0.06 2.50 7.58 -2.39 -0.02 2.48 16 11 C -0.11 -3.67 5.46 30.62 0.17 -3.50 16 12 C -0.12 -4.64 6.08 30.67 0.19 -4.45 16 13 C 0.15 7.01 4.71 86.36 0.41 7.41 16 14 N -0.61 -28.86 2.85 -674.41 -1.92 -30.78 16 15 C -0.35 -18.40 8.52 84.04 0.72 -17.68 16 16 H 0.06 3.17 6.24 -2.91 -0.02 3.15 16 17 C -0.07 -4.13 4.66 84.86 0.40 -3.73 16 18 N -0.94 -56.05 12.42 21.65 0.27 -55.79 16 19 Si 1.11 50.42 29.99 68.60 2.06 52.48 16 20 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 21 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 22 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 23 C 0.17 6.25 3.05 45.12 0.14 6.39 16 24 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 25 C -0.13 -4.40 7.82 71.98 0.56 -3.84 16 26 C -0.16 -2.75 9.55 22.75 0.22 -2.53 16 27 C 0.31 5.77 7.74 84.78 0.66 6.43 16 28 O -0.49 -7.22 13.56 -90.02 -1.22 -8.44 16 29 N -0.50 -10.15 9.87 -297.17 -2.93 -13.08 16 30 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.05 0.80 7.94 -2.38 -0.02 0.78 16 32 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.10 0.94 7.86 -2.38 -0.02 0.92 16 35 H 0.15 3.02 7.62 -2.91 -0.02 2.99 16 36 H 0.41 8.08 6.74 -92.71 -0.63 7.46 16 37 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 38 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 41 H 0.05 2.47 6.31 -2.39 -0.02 2.45 16 42 H 0.01 0.58 7.88 -2.39 -0.02 0.56 16 43 H 0.26 15.37 6.77 -92.71 -0.63 14.75 16 44 H 0.04 1.52 7.46 -2.39 -0.02 1.51 16 45 H 0.08 2.04 7.82 -2.38 -0.02 2.02 16 46 H 0.05 1.82 7.60 -2.39 -0.02 1.80 16 47 H 0.17 2.11 6.53 -2.91 -0.02 2.09 16 48 H 0.42 1.99 9.06 -74.06 -0.67 1.32 16 Total: -1.00 -71.89 384.03 -0.54 -72.42 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: -0.16 Total: 20.52 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: 5.46 Total: 2.69 kcal Atomic # 7 Polarization: -113.04 SS G_CDS: -6.61 Total: -119.65 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: -1.28 Total: -28.46 kcal Atomic # 14 Polarization: 50.42 SS G_CDS: 2.06 Total: 52.48 kcal Total: -71.89 -0.54 -72.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993603884.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.611 kcal (2) G-P(sol) polarization free energy of solvation -71.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds