Wall clock time and date at job start Tue Mar 31 2020 17:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.33691 * 126.27507 * 2 1 4 4 C 1.30616 * 108.99588 * 180.02562 * 3 2 1 5 5 C 1.50704 * 125.42424 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47028 * 90.02861 * 5 4 3 7 7 C 1.53003 * 117.49555 * 243.62013 * 6 5 4 8 8 C 1.52993 * 60.00146 * 252.51119 * 7 6 5 9 9 O 1.33667 * 109.15537 * 359.75646 * 4 3 2 10 10 C 1.35347 * 107.68329 * 0.39623 * 9 4 3 11 11 C 1.46715 * 126.64362 * 179.87359 * 10 9 4 12 12 O 1.21687 * 119.99838 * 186.03620 * 11 10 9 13 13 N 1.34779 * 120.00486 * 6.03826 * 11 10 9 14 14 C 1.46498 * 119.99244 * 356.36355 * 13 11 10 15 15 C 1.46490 * 120.00045 * 176.36193 * 13 11 10 16 16 H 1.08996 * 110.64846 * 358.31422 * 15 13 11 17 17 C 1.55164 * 110.71950 * 234.97586 * 15 13 11 18 18 C 1.55128 * 101.48636 * 205.97454 * 17 15 13 19 19 N 1.47425 * 104.72438 * 37.29385 * 18 17 15 20 20 C 1.36936 * 125.64745 * 155.81878 * 19 18 17 21 21 H 1.08003 * 119.99912 * 185.89405 * 20 19 18 22 22 C 1.38812 * 120.00275 * 5.89954 * 20 19 18 23 23 N 1.31621 * 119.99839 * 34.83709 * 22 20 19 24 24 Si 1.86793 * 120.00009 * 214.83892 * 22 20 19 25 25 H 1.48500 * 109.47110 * 179.97438 * 24 22 20 26 26 H 1.48500 * 109.47527 * 299.99722 * 24 22 20 27 27 H 1.48500 * 109.47314 * 59.99979 * 24 22 20 28 28 C 1.47020 * 108.70092 * 335.55342 * 19 18 17 29 29 H 1.09001 * 109.47211 * 269.97632 * 1 2 3 30 30 H 1.09009 * 109.46791 * 29.96947 * 1 2 3 31 31 H 1.08999 * 109.47407 * 149.96853 * 1 2 3 32 32 H 1.08998 * 109.47190 * 210.02981 * 5 4 3 33 33 H 1.09000 * 109.47013 * 330.02876 * 5 4 3 34 34 H 1.08991 * 115.55610 * 29.32735 * 6 5 4 35 35 H 1.09005 * 117.50121 * 0.02562 * 7 6 5 36 36 H 1.09009 * 117.49818 * 145.02249 * 7 6 5 37 37 H 1.08999 * 117.50124 * 252.50662 * 8 7 6 38 38 H 1.09002 * 117.49653 * 107.48939 * 8 7 6 39 39 H 1.09004 * 109.47194 * 275.61771 * 14 13 11 40 40 H 1.08996 * 109.47711 * 35.61730 * 14 13 11 41 41 H 1.09004 * 109.47085 * 155.61750 * 14 13 11 42 42 H 1.09007 * 111.00324 * 324.20860 * 17 15 13 43 43 H 1.09001 * 111.00386 * 88.02455 * 17 15 13 44 44 H 1.09004 * 110.49650 * 278.45506 * 18 17 15 45 45 H 1.09004 * 110.34703 * 156.05951 * 18 17 15 46 46 H 0.97001 * 119.99922 * 355.75550 * 23 22 20 47 47 H 1.09007 * 109.87957 * 120.70656 * 28 19 18 48 48 H 1.09001 * 109.88175 * 241.86768 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5452 0.6898 -0.0006 5 6 4.7440 1.6030 -0.0002 6 6 5.1505 1.9104 1.4424 7 6 5.0536 3.3644 1.9090 8 6 6.4236 2.7313 1.6580 9 8 3.5889 -0.6461 0.0044 10 6 2.3136 -1.0993 -0.0007 11 6 1.8826 -2.5017 -0.0006 12 8 0.7026 -2.7755 -0.1163 13 7 2.7935 -3.4867 0.1278 14 6 4.2207 -3.1612 0.1871 15 6 2.3565 -4.8826 0.2081 16 1 1.2688 -4.9471 0.1791 17 6 2.9166 -5.5605 1.4865 18 6 2.9474 -7.0510 1.0575 19 7 3.3460 -7.0243 -0.3616 20 6 3.9487 -8.0494 -1.0407 21 1 4.2884 -7.8992 -2.0548 22 6 4.1229 -9.2816 -0.4257 23 7 3.2174 -9.7300 0.4178 24 14 5.6423 -10.3033 -0.7952 25 1 5.5907 -11.5667 -0.0166 26 1 5.6872 -10.6170 -2.2460 27 1 6.8575 -9.5383 -0.4164 28 6 2.9833 -5.7172 -0.9286 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3633 0.8903 -0.5134 31 1 -0.3634 -0.8897 -0.5143 32 1 5.5721 1.1158 -0.5150 33 1 4.4935 2.5317 -0.5129 34 1 4.9244 1.1317 2.1707 35 1 4.6998 4.1018 1.1884 36 1 4.7635 3.5423 2.9446 37 1 7.0349 2.4927 2.5283 38 1 6.9715 3.0522 0.7721 39 1 4.6126 -3.0600 -0.8249 40 1 4.3575 -2.2233 0.7252 41 1 4.7539 -3.9584 0.7052 42 1 3.9180 -5.1957 1.7154 43 1 2.2460 -5.4126 2.3330 44 1 1.9600 -7.4998 1.1658 45 1 3.6814 -7.6001 1.6474 46 1 2.4597 -9.1736 0.6569 47 1 3.8749 -5.2173 -1.3074 48 1 2.2601 -5.8499 -1.7332 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033077607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:20 Heat of formation + Delta-G solvation = 46.930562 kcal Electronic energy + Delta-G solvation = -28945.090511 eV Core-core repulsion = 25003.816412 eV Total energy + Delta-G solvation = -3941.274099 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -43.68796 -39.93107 -38.06748 -37.64359 -35.80284 -34.79865 -32.79490 -32.20142 -29.61161 -29.32776 -28.28579 -27.51084 -26.33881 -24.36668 -22.95896 -22.73817 -22.16227 -21.12005 -20.64473 -20.29388 -19.35705 -17.66488 -17.59468 -17.23610 -16.81724 -16.33568 -15.74269 -15.17902 -14.66088 -14.50929 -14.46385 -14.14377 -13.80487 -13.51533 -13.49375 -13.27891 -13.22909 -13.12138 -12.94357 -12.44894 -12.35584 -12.21798 -12.05688 -11.96561 -11.74840 -11.23882 -11.14243 -10.93099 -10.85681 -10.83945 -10.77858 -10.49730 -10.45918 -10.17831 -10.07076 -10.01540 -9.69436 -9.07010 -8.54422 -8.28823 -7.00710 -6.23370 -3.07570 0.63065 2.12609 2.16936 2.91866 2.98673 3.30658 3.47963 3.52575 3.54013 3.70572 4.21726 4.33571 4.40184 4.49886 4.53255 4.55503 4.72407 4.99939 5.04984 5.09701 5.14747 5.19966 5.21206 5.23291 5.30191 5.35964 5.44667 5.45140 5.50969 5.55040 5.60144 5.65809 5.67893 5.70930 5.73047 5.87724 5.91808 6.04548 6.14046 6.27719 6.35137 6.53717 6.73267 6.88399 6.94410 7.24025 7.41791 7.73042 7.95585 8.46326 8.96411 9.80958 10.33717 11.17836 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016362 B = 0.002612 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.899965 B =10715.320446 C =11880.041268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.078 3.922 3 N -0.483 5.483 4 C 0.215 3.785 5 C 0.005 3.995 6 C -0.157 4.157 7 C -0.172 4.172 8 C -0.172 4.172 9 O -0.179 6.179 10 C -0.109 4.109 11 C 0.605 3.395 12 O -0.518 6.518 13 N -0.588 5.588 14 C 0.072 3.928 15 C 0.127 3.873 16 H 0.109 0.891 17 C -0.144 4.144 18 C 0.144 3.856 19 N -0.602 5.602 20 C -0.349 4.349 21 H 0.070 0.930 22 C -0.024 4.024 23 N -0.912 5.912 24 Si 1.067 2.933 25 H -0.286 1.286 26 H -0.293 1.293 27 H -0.294 1.294 28 C 0.132 3.868 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.060 0.940 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.027 0.973 45 H 0.059 0.941 46 H 0.270 0.730 47 H 0.031 0.969 48 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.709 26.131 2.839 26.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.046 4.046 3 N -0.213 5.213 4 C 0.010 3.990 5 C -0.033 4.033 6 C -0.176 4.176 7 C -0.209 4.209 8 C -0.209 4.209 9 O -0.066 6.066 10 C -0.164 4.164 11 C 0.392 3.608 12 O -0.396 6.396 13 N -0.319 5.319 14 C -0.071 4.071 15 C 0.024 3.976 16 H 0.127 0.873 17 C -0.184 4.184 18 C 0.018 3.982 19 N -0.330 5.330 20 C -0.476 4.476 21 H 0.088 0.912 22 C -0.226 4.226 23 N -0.553 5.553 24 Si 0.897 3.103 25 H -0.211 1.211 26 H -0.220 1.220 27 H -0.222 1.222 28 C 0.006 3.994 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.116 0.884 32 H 0.120 0.880 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.117 0.883 36 H 0.114 0.886 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.078 0.922 40 H 0.095 0.905 41 H 0.104 0.896 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.045 0.955 45 H 0.077 0.923 46 H 0.082 0.918 47 H 0.049 0.951 48 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 3.769 24.997 2.999 25.456 hybrid contribution -0.412 0.817 -0.379 0.990 sum 3.357 25.814 2.620 26.163 Atomic orbital electron populations 1.20408 0.85311 1.04522 1.03657 1.22052 0.98321 0.86357 0.97878 1.70335 1.00339 1.31093 1.19486 1.26379 0.95414 0.79958 0.97295 1.19757 0.90238 0.96345 0.96938 1.22129 1.03347 0.95939 0.96144 1.23088 1.00120 0.94916 1.02805 1.23027 0.90655 1.03421 1.03789 1.84695 1.29572 1.23026 1.69351 1.22941 0.81162 0.96217 1.16088 1.16443 0.85568 0.81315 0.77515 1.90838 1.16028 1.81558 1.51172 1.47731 1.07021 1.06622 1.70502 1.22013 0.80534 1.01965 1.02566 1.22331 1.00656 0.77634 0.96939 0.87324 1.23263 1.00822 0.98143 0.96136 1.21590 0.98449 0.91539 0.86585 1.44562 1.71301 1.11427 1.05693 1.19689 1.35767 0.92540 0.99626 0.91167 1.25715 1.02318 0.95175 0.99428 1.70863 1.09968 1.35167 1.39345 0.83441 0.75599 0.75649 0.75567 1.21149 1.22009 1.22193 1.21495 0.96757 0.87444 0.93740 0.90132 0.90513 0.88386 0.87982 0.87227 0.87399 0.88264 0.88595 0.88334 0.88286 0.92156 0.90482 0.89556 0.91030 0.91319 0.95527 0.92300 0.91809 0.95096 0.95492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.94 9.94 36.00 0.36 -0.58 16 2 C 0.08 1.05 7.16 -82.47 -0.59 0.46 16 3 N -0.48 -6.11 11.26 -7.07 -0.08 -6.19 16 4 C 0.22 2.32 7.52 -12.79 -0.10 2.22 16 5 C 0.01 0.03 6.12 -27.88 -0.17 -0.14 16 6 C -0.16 -1.01 5.72 -90.62 -0.52 -1.53 16 7 C -0.17 -0.97 10.18 -26.73 -0.27 -1.24 16 8 C -0.17 -0.85 10.25 -26.73 -0.27 -1.12 16 9 O -0.18 -2.19 7.47 4.41 0.03 -2.16 16 10 C -0.11 -1.55 6.80 -36.84 -0.25 -1.80 16 11 C 0.60 9.73 7.64 -12.84 -0.10 9.63 16 12 O -0.52 -9.35 14.15 5.20 0.07 -9.28 16 13 N -0.59 -9.27 2.88 -173.37 -0.50 -9.77 16 14 C 0.07 0.94 8.43 59.85 0.50 1.44 16 15 C 0.13 2.31 3.35 -66.10 -0.22 2.09 16 16 H 0.11 2.08 7.00 -51.93 -0.36 1.72 16 17 C -0.14 -2.59 6.60 -24.46 -0.16 -2.75 16 18 C 0.14 3.31 5.18 -2.41 -0.01 3.30 16 19 N -0.60 -15.26 3.37 -169.93 -0.57 -15.83 16 20 C -0.35 -9.89 10.01 -15.06 -0.15 -10.04 16 21 H 0.07 1.99 8.02 -52.48 -0.42 1.57 16 22 C -0.02 -0.69 4.96 -17.43 -0.09 -0.78 16 23 N -0.91 -27.51 12.96 55.49 0.72 -26.79 16 24 Si 1.07 25.29 30.03 -169.99 -5.11 20.19 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 27 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 28 C 0.13 2.83 6.88 -3.07 -0.02 2.81 16 29 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 31 H 0.10 1.24 6.36 -51.93 -0.33 0.91 16 32 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.11 0.61 7.87 -51.93 -0.41 0.20 16 34 H 0.11 0.81 8.07 -51.93 -0.42 0.40 16 35 H 0.10 0.50 8.03 -51.93 -0.42 0.09 16 36 H 0.10 0.53 8.14 -51.92 -0.42 0.11 16 37 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.06 0.77 8.08 -51.93 -0.42 0.35 16 40 H 0.08 0.90 5.35 -51.93 -0.28 0.62 16 41 H 0.09 1.15 6.13 -51.93 -0.32 0.84 16 42 H 0.07 1.20 6.14 -51.92 -0.32 0.88 16 43 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.03 0.65 7.06 -51.93 -0.37 0.28 16 45 H 0.06 1.47 7.50 -51.93 -0.39 1.08 16 46 H 0.27 8.10 5.77 -40.82 -0.24 7.87 16 47 H 0.03 0.65 7.07 -51.92 -0.37 0.28 16 48 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 383.81 15.07 5.78 5.78 Total: -1.00 -33.27 383.81 -8.94 -42.21 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -7.23 Total: -0.13 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: -2.06 Total: 1.97 kcal Atomic # 7 Polarization: -58.15 SS G_CDS: -0.43 Total: -58.59 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.11 Total: -11.44 kcal Atomic # 14 Polarization: 25.29 SS G_CDS: -5.11 Total: 20.19 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.27 -8.94 -42.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033077607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.140 kcal (2) G-P(sol) polarization free energy of solvation -33.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds