Wall clock time and date at job start Tue Mar 31 2020 17:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.33691 * 126.27507 * 2 1 4 4 C 1.30616 * 108.99588 * 180.02562 * 3 2 1 5 5 C 1.50704 * 125.42424 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47028 * 90.02861 * 5 4 3 7 7 C 1.53003 * 117.49555 * 243.62013 * 6 5 4 8 8 C 1.52993 * 60.00146 * 252.51119 * 7 6 5 9 9 O 1.33667 * 109.15537 * 359.75646 * 4 3 2 10 10 C 1.35347 * 107.68329 * 0.39623 * 9 4 3 11 11 C 1.46715 * 126.64362 * 179.87359 * 10 9 4 12 12 O 1.21687 * 119.99838 * 186.03620 * 11 10 9 13 13 N 1.34779 * 120.00486 * 6.03826 * 11 10 9 14 14 C 1.46498 * 119.99244 * 356.36355 * 13 11 10 15 15 C 1.46490 * 120.00045 * 176.36193 * 13 11 10 16 16 H 1.08996 * 110.64846 * 358.31422 * 15 13 11 17 17 C 1.55164 * 110.71950 * 234.97586 * 15 13 11 18 18 C 1.55128 * 101.48636 * 205.97454 * 17 15 13 19 19 N 1.47425 * 104.72438 * 37.29385 * 18 17 15 20 20 C 1.36936 * 125.64745 * 155.81878 * 19 18 17 21 21 H 1.08003 * 119.99912 * 185.89405 * 20 19 18 22 22 C 1.38812 * 120.00275 * 5.89954 * 20 19 18 23 23 N 1.31621 * 119.99839 * 34.83709 * 22 20 19 24 24 Si 1.86793 * 120.00009 * 214.83892 * 22 20 19 25 25 H 1.48500 * 109.47110 * 179.97438 * 24 22 20 26 26 H 1.48500 * 109.47527 * 299.99722 * 24 22 20 27 27 H 1.48500 * 109.47314 * 59.99979 * 24 22 20 28 28 C 1.47020 * 108.70092 * 335.55342 * 19 18 17 29 29 H 1.09001 * 109.47211 * 269.97632 * 1 2 3 30 30 H 1.09009 * 109.46791 * 29.96947 * 1 2 3 31 31 H 1.08999 * 109.47407 * 149.96853 * 1 2 3 32 32 H 1.08998 * 109.47190 * 210.02981 * 5 4 3 33 33 H 1.09000 * 109.47013 * 330.02876 * 5 4 3 34 34 H 1.08991 * 115.55610 * 29.32735 * 6 5 4 35 35 H 1.09005 * 117.50121 * 0.02562 * 7 6 5 36 36 H 1.09009 * 117.49818 * 145.02249 * 7 6 5 37 37 H 1.08999 * 117.50124 * 252.50662 * 8 7 6 38 38 H 1.09002 * 117.49653 * 107.48939 * 8 7 6 39 39 H 1.09004 * 109.47194 * 275.61771 * 14 13 11 40 40 H 1.08996 * 109.47711 * 35.61730 * 14 13 11 41 41 H 1.09004 * 109.47085 * 155.61750 * 14 13 11 42 42 H 1.09007 * 111.00324 * 324.20860 * 17 15 13 43 43 H 1.09001 * 111.00386 * 88.02455 * 17 15 13 44 44 H 1.09004 * 110.49650 * 278.45506 * 18 17 15 45 45 H 1.09004 * 110.34703 * 156.05951 * 18 17 15 46 46 H 0.97001 * 119.99922 * 355.75550 * 23 22 20 47 47 H 1.09007 * 109.87957 * 120.70656 * 28 19 18 48 48 H 1.09001 * 109.88175 * 241.86768 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5452 0.6898 -0.0006 5 6 4.7440 1.6030 -0.0002 6 6 5.1505 1.9104 1.4424 7 6 5.0536 3.3644 1.9090 8 6 6.4236 2.7313 1.6580 9 8 3.5889 -0.6461 0.0044 10 6 2.3136 -1.0993 -0.0007 11 6 1.8826 -2.5017 -0.0006 12 8 0.7026 -2.7755 -0.1163 13 7 2.7935 -3.4867 0.1278 14 6 4.2207 -3.1612 0.1871 15 6 2.3565 -4.8826 0.2081 16 1 1.2688 -4.9471 0.1791 17 6 2.9166 -5.5605 1.4865 18 6 2.9474 -7.0510 1.0575 19 7 3.3460 -7.0243 -0.3616 20 6 3.9487 -8.0494 -1.0407 21 1 4.2884 -7.8992 -2.0548 22 6 4.1229 -9.2816 -0.4257 23 7 3.2174 -9.7300 0.4178 24 14 5.6423 -10.3033 -0.7952 25 1 5.5907 -11.5667 -0.0166 26 1 5.6872 -10.6170 -2.2460 27 1 6.8575 -9.5383 -0.4164 28 6 2.9833 -5.7172 -0.9286 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3633 0.8903 -0.5134 31 1 -0.3634 -0.8897 -0.5143 32 1 5.5721 1.1158 -0.5150 33 1 4.4935 2.5317 -0.5129 34 1 4.9244 1.1317 2.1707 35 1 4.6998 4.1018 1.1884 36 1 4.7635 3.5423 2.9446 37 1 7.0349 2.4927 2.5283 38 1 6.9715 3.0522 0.7721 39 1 4.6126 -3.0600 -0.8249 40 1 4.3575 -2.2233 0.7252 41 1 4.7539 -3.9584 0.7052 42 1 3.9180 -5.1957 1.7154 43 1 2.2460 -5.4126 2.3330 44 1 1.9600 -7.4998 1.1658 45 1 3.6814 -7.6001 1.6474 46 1 2.4597 -9.1736 0.6569 47 1 3.8749 -5.2173 -1.3074 48 1 2.2601 -5.8499 -1.7332 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033077607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:19 Heat of formation + Delta-G solvation = 25.737148 kcal Electronic energy + Delta-G solvation = -28946.009526 eV Core-core repulsion = 25003.816412 eV Total energy + Delta-G solvation = -3942.193115 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.63915 -41.26362 -39.26697 -38.49764 -36.99250 -36.10692 -34.30861 -33.43836 -31.17839 -30.33403 -29.76345 -28.63968 -27.65246 -26.29825 -23.91534 -23.18911 -23.15408 -22.19536 -22.03126 -21.43996 -20.72047 -19.69794 -18.81483 -18.21709 -17.91189 -17.30136 -16.58618 -16.36141 -16.21976 -15.98756 -15.59778 -15.20239 -15.12381 -14.94440 -14.70850 -14.49272 -14.30398 -14.17452 -13.98533 -13.93333 -13.59050 -13.28316 -13.16452 -12.75466 -12.69945 -12.63592 -12.49857 -12.44266 -12.31762 -12.08354 -11.91257 -11.89343 -11.77032 -11.71629 -11.33740 -11.29461 -10.91828 -10.41815 -10.15943 -9.76470 -9.09059 -8.48627 -5.28498 -0.38768 1.13053 1.20797 1.57392 1.65614 1.74740 1.81731 1.85500 2.60766 2.68958 2.90818 3.13542 3.29046 3.48801 3.55081 3.60596 3.74109 3.75350 3.92948 4.00786 4.03141 4.06747 4.12889 4.27979 4.28586 4.36101 4.43700 4.47881 4.59081 4.62666 4.66355 4.68501 4.74680 4.82207 4.85430 4.86016 4.87892 4.97137 4.98156 5.08202 5.14751 5.22698 5.25399 5.30504 5.31113 5.61488 6.01544 6.27306 6.43523 6.71223 6.82089 7.68068 8.23510 8.93823 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016362 B = 0.002612 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.899965 B =10715.320446 C =11880.041268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.080 3.920 3 N -0.503 5.503 4 C 0.234 3.766 5 C 0.006 3.994 6 C -0.168 4.168 7 C -0.178 4.178 8 C -0.158 4.158 9 O -0.179 6.179 10 C -0.134 4.134 11 C 0.605 3.395 12 O -0.545 6.545 13 N -0.589 5.589 14 C 0.072 3.928 15 C 0.144 3.856 16 H 0.097 0.903 17 C -0.124 4.124 18 C 0.147 3.853 19 N -0.622 5.622 20 C -0.360 4.360 21 H 0.064 0.936 22 C -0.075 4.075 23 N -0.940 5.940 24 Si 1.121 2.879 25 H -0.291 1.291 26 H -0.276 1.276 27 H -0.277 1.277 28 C 0.133 3.867 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.124 0.876 33 H 0.126 0.874 34 H 0.094 0.906 35 H 0.106 0.894 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.114 0.886 39 H 0.065 0.935 40 H 0.095 0.905 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.092 0.908 44 H 0.007 0.993 45 H 0.034 0.966 46 H 0.257 0.743 47 H 0.042 0.958 48 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.753 28.600 2.856 29.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.044 4.044 3 N -0.232 5.232 4 C 0.028 3.972 5 C -0.031 4.031 6 C -0.188 4.188 7 C -0.215 4.215 8 C -0.195 4.195 9 O -0.067 6.067 10 C -0.188 4.188 11 C 0.394 3.606 12 O -0.425 6.425 13 N -0.319 5.319 14 C -0.069 4.069 15 C 0.040 3.960 16 H 0.115 0.885 17 C -0.163 4.163 18 C 0.021 3.979 19 N -0.350 5.350 20 C -0.488 4.488 21 H 0.082 0.918 22 C -0.271 4.271 23 N -0.583 5.583 24 Si 0.944 3.056 25 H -0.218 1.218 26 H -0.202 1.202 27 H -0.203 1.203 28 C 0.007 3.993 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.102 0.898 32 H 0.142 0.858 33 H 0.144 0.856 34 H 0.112 0.888 35 H 0.124 0.876 36 H 0.111 0.889 37 H 0.120 0.880 38 H 0.132 0.868 39 H 0.084 0.916 40 H 0.113 0.887 41 H 0.104 0.896 42 H 0.107 0.893 43 H 0.110 0.890 44 H 0.024 0.976 45 H 0.053 0.947 46 H 0.068 0.932 47 H 0.059 0.941 48 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges 5.817 27.521 3.007 28.289 hybrid contribution -1.054 0.197 -0.417 1.151 sum 4.763 27.718 2.590 28.243 Atomic orbital electron populations 1.20434 0.84463 1.04591 1.04279 1.22391 0.99152 0.86469 0.96404 1.70404 1.01051 1.30798 1.20953 1.27328 0.96144 0.79698 0.93996 1.20071 0.89215 0.96254 0.97577 1.22055 1.05093 0.96042 0.95566 1.23172 1.00914 0.94505 1.02892 1.23113 0.90164 1.01739 1.04471 1.84666 1.28614 1.23763 1.69676 1.22480 0.82123 0.95263 1.18981 1.16621 0.85176 0.82065 0.76746 1.90820 1.17143 1.82244 1.52330 1.47682 1.08195 1.05365 1.70651 1.22142 0.78744 1.02770 1.03225 1.21902 0.99711 0.78842 0.95570 0.88493 1.23120 1.02504 0.94095 0.96562 1.21503 0.96365 0.94601 0.85408 1.44810 1.71336 1.12044 1.06827 1.19939 1.35568 0.93508 0.99786 0.91808 1.27155 1.03995 0.96872 0.99095 1.70981 1.10668 1.35536 1.41144 0.82765 0.72481 0.74090 0.76220 1.21755 1.20188 1.20336 1.21558 0.96801 0.86534 0.94441 0.89162 0.88858 0.89800 0.85793 0.85643 0.88785 0.87567 0.88898 0.88024 0.86760 0.91614 0.88717 0.89573 0.89255 0.88997 0.97568 0.94733 0.93163 0.94051 0.97235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.79 9.94 71.23 0.71 -1.08 16 2 C 0.08 2.06 7.16 41.83 0.30 2.36 16 3 N -0.50 -11.80 11.26 -291.05 -3.28 -15.07 16 4 C 0.23 4.50 7.52 88.29 0.66 5.17 16 5 C 0.01 0.06 6.12 29.85 0.18 0.25 16 6 C -0.17 -1.75 5.72 -10.79 -0.06 -1.82 16 7 C -0.18 -1.59 10.18 30.59 0.31 -1.28 16 8 C -0.16 -1.09 10.25 30.59 0.31 -0.77 16 9 O -0.18 -4.03 7.47 -7.15 -0.05 -4.08 16 10 C -0.13 -3.65 6.80 24.04 0.16 -3.49 16 11 C 0.61 19.17 7.64 86.46 0.66 19.83 16 12 O -0.55 -19.85 14.15 -4.31 -0.06 -19.92 16 13 N -0.59 -17.99 2.88 -820.63 -2.37 -20.36 16 14 C 0.07 1.76 8.43 127.77 1.08 2.84 16 15 C 0.14 5.19 3.35 46.18 0.15 5.34 16 16 H 0.10 3.77 7.00 -2.39 -0.02 3.75 16 17 C -0.12 -4.34 6.60 32.07 0.21 -4.13 16 18 C 0.15 6.90 5.18 86.93 0.45 7.35 16 19 N -0.62 -32.15 3.37 -691.53 -2.33 -34.48 16 20 C -0.36 -20.72 10.01 84.03 0.84 -19.87 16 21 H 0.06 3.66 8.02 -2.91 -0.02 3.64 16 22 C -0.07 -4.32 4.96 84.86 0.42 -3.90 16 23 N -0.94 -58.14 12.96 21.65 0.28 -57.86 16 24 Si 1.12 51.06 30.03 68.60 2.06 53.12 16 25 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 26 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 27 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 28 C 0.13 5.73 6.88 86.73 0.60 6.33 16 29 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 31 H 0.08 2.12 6.36 -2.39 -0.02 2.11 16 32 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.13 0.95 7.87 -2.39 -0.02 0.93 16 34 H 0.09 1.26 8.07 -2.39 -0.02 1.24 16 35 H 0.11 0.80 8.03 -2.38 -0.02 0.78 16 36 H 0.09 0.87 8.14 -2.38 -0.02 0.86 16 37 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.07 1.54 8.08 -2.39 -0.02 1.52 16 40 H 0.09 1.98 5.35 -2.39 -0.01 1.97 16 41 H 0.09 2.11 6.13 -2.38 -0.01 2.10 16 42 H 0.09 2.83 6.14 -2.38 -0.01 2.82 16 43 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 44 H 0.01 0.33 7.06 -2.39 -0.02 0.32 16 45 H 0.03 1.77 7.50 -2.38 -0.02 1.75 16 46 H 0.26 16.08 5.77 -92.71 -0.54 15.55 16 47 H 0.04 1.70 7.07 -2.38 -0.02 1.69 16 48 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 Total: -1.00 -73.28 383.81 2.45 -70.82 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 1.20 Total: 14.69 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: 6.99 Total: 13.14 kcal Atomic # 7 Polarization: -120.08 SS G_CDS: -7.69 Total: -127.77 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -0.11 Total: -24.00 kcal Atomic # 14 Polarization: 51.06 SS G_CDS: 2.06 Total: 53.12 kcal Total: -73.28 2.45 -70.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033077607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.559 kcal (2) G-P(sol) polarization free energy of solvation -73.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds