Wall clock time and date at job start Tue Mar 31 2020 17:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.33693 * 126.27324 * 2 1 4 4 C 1.30618 * 108.99883 * 180.25544 * 3 2 1 5 5 C 1.50701 * 125.42681 * 179.74597 * 4 3 2 6 6 C 1.53001 * 117.49776 * 8.77233 * 5 4 3 7 7 C 1.52995 * 117.49679 * 300.11152 * 5 4 3 8 8 O 1.33672 * 109.15114 * 359.76889 * 4 3 2 9 9 C 1.35341 * 107.68258 * 359.97438 * 8 4 3 10 10 C 1.46727 * 126.64222 * 179.97438 * 9 8 4 11 11 O 1.21680 * 119.99813 * 186.17649 * 10 9 8 12 12 N 1.34775 * 119.99907 * 6.17855 * 10 9 8 13 13 C 1.46932 * 120.63092 * 353.98240 * 12 10 9 14 14 C 1.53188 * 108.77198 * 126.41553 * 13 12 10 15 15 C 1.53036 * 109.31708 * 54.63847 * 14 13 12 16 16 H 1.09004 * 109.46133 * 58.63582 * 15 14 13 17 17 N 1.46495 * 109.46710 * 178.61444 * 15 14 13 18 18 C 1.36934 * 120.00029 * 275.03143 * 17 15 14 19 19 H 1.08008 * 119.99995 * 359.97438 * 18 17 15 20 20 C 1.38807 * 120.00387 * 179.97438 * 18 17 15 21 21 N 1.31619 * 120.00329 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 119.99983 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.46687 * 90.00227 * 22 20 18 24 24 H 1.48498 * 109.47165 * 330.00674 * 22 20 18 25 25 H 1.48498 * 109.47184 * 210.00279 * 22 20 18 26 26 C 1.53047 * 109.52616 * 298.62610 * 15 14 13 27 27 C 1.46924 * 120.63130 * 174.01045 * 12 10 9 28 28 H 1.08999 * 109.59034 * 113.79867 * 27 12 10 29 29 C 1.53002 * 109.58460 * 353.51145 * 27 12 10 30 30 H 1.08997 * 109.47285 * 270.13203 * 1 2 3 31 31 H 1.09003 * 109.47240 * 30.13398 * 1 2 3 32 32 H 1.09000 * 109.47239 * 150.13307 * 1 2 3 33 33 H 1.09000 * 115.55034 * 154.44149 * 5 4 3 34 34 H 1.09002 * 117.49764 * 0.02562 * 6 5 4 35 35 H 1.08997 * 117.49487 * 145.01657 * 6 5 4 36 36 H 1.08994 * 117.50220 * 214.97586 * 7 5 4 37 37 H 1.09002 * 117.50056 * 359.97438 * 7 5 4 38 38 H 1.08998 * 109.58264 * 6.63379 * 13 12 10 39 39 H 1.08993 * 109.70497 * 246.27637 * 13 12 10 40 40 H 1.09004 * 109.50247 * 294.68397 * 14 13 12 41 41 H 1.09002 * 109.49666 * 174.58760 * 14 13 12 42 42 H 0.97000 * 120.00412 * 95.01845 * 17 15 14 43 43 H 0.96998 * 120.00467 * 179.97438 * 21 20 18 44 44 H 1.08996 * 109.50200 * 181.31747 * 26 15 14 45 45 H 1.08998 * 109.49746 * 301.42361 * 26 15 14 46 46 H 1.09002 * 109.46793 * 66.22413 * 29 27 12 47 47 H 1.09003 * 109.47125 * 186.22052 * 29 27 12 48 48 H 1.08997 * 109.47399 * 306.22340 * 29 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2979 1.0778 0.0000 4 6 3.5452 0.6900 -0.0055 5 6 4.7439 1.6032 -0.0129 6 6 4.4941 3.0986 0.1930 7 6 4.8875 2.5710 -1.1891 8 8 3.5890 -0.6460 -0.0041 9 6 2.3137 -1.0991 0.0031 10 6 1.8827 -2.5017 0.0066 11 8 0.7019 -2.7755 -0.1002 12 7 2.7946 -3.4866 0.1281 13 6 4.2317 -3.1806 0.1258 14 6 4.8684 -3.7943 1.3767 15 6 4.5442 -5.2890 1.4283 16 1 4.9210 -5.7737 0.5276 17 7 5.1792 -5.8859 2.6059 18 6 6.4817 -6.3038 2.5435 19 1 7.0408 -6.1938 1.6259 20 6 7.0836 -6.8689 3.6593 21 7 8.3354 -7.2711 3.5992 22 14 6.1169 -7.0586 5.2465 23 1 5.4337 -8.3771 5.2552 24 1 5.1049 -5.9761 5.3422 25 1 7.0437 -6.9737 6.4037 26 6 3.0282 -5.4809 1.5143 27 6 2.3707 -4.8866 0.2648 28 1 2.6814 -5.4501 -0.6150 29 6 0.8482 -4.9503 0.4033 30 1 -0.3634 0.0024 1.0276 31 1 -0.3634 0.8888 -0.5159 32 1 -0.3634 -0.8912 -0.5118 33 1 5.6576 1.1830 0.4076 34 1 3.4627 3.4218 0.3341 35 1 5.2436 3.6622 0.7485 36 1 5.8956 2.7879 -1.5422 37 1 4.1151 2.5469 -1.9579 38 1 4.3752 -2.1002 0.1353 39 1 4.6960 -3.6030 -0.7653 40 1 4.4700 -3.3047 2.2653 41 1 5.9492 -3.6576 1.3391 42 1 4.6770 -5.9849 3.4299 43 1 8.7561 -7.6656 4.3790 44 1 2.7990 -6.5448 1.5747 45 1 2.6472 -4.9752 2.4015 46 1 0.3847 -4.6188 -0.5259 47 1 0.5452 -5.9758 0.6148 48 1 0.5302 -4.3017 1.2196 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044771821.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:47 Heat of formation + Delta-G solvation = 51.668777 kcal Electronic energy + Delta-G solvation = -29588.122880 eV Core-core repulsion = 25647.054245 eV Total energy + Delta-G solvation = -3941.068635 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.67908 -40.39327 -37.73972 -37.62188 -35.57985 -34.61901 -33.03419 -32.02645 -31.29011 -29.93358 -28.13536 -27.16670 -25.30147 -24.30061 -23.09345 -22.81705 -22.56543 -21.20533 -21.00588 -20.36689 -19.63223 -17.67124 -17.28597 -17.18095 -16.87207 -16.16733 -15.41016 -15.12525 -15.05821 -14.74487 -14.31884 -14.21230 -13.73167 -13.57708 -13.49134 -13.37061 -13.02698 -12.78695 -12.65389 -12.40538 -12.23725 -12.13391 -11.98856 -11.94648 -11.65176 -11.46278 -11.10141 -11.05325 -11.04054 -10.94409 -10.88577 -10.75685 -10.47895 -10.29798 -9.98627 -9.64399 -9.36920 -8.98038 -8.94847 -8.54841 -7.33610 -5.82332 -3.18427 0.63284 2.06654 2.13265 2.87002 3.00575 3.33982 3.37288 3.37595 3.42076 3.61912 4.24102 4.35465 4.47420 4.54507 4.55850 4.56794 4.90597 4.91392 5.07520 5.15397 5.22352 5.23412 5.31180 5.39298 5.40502 5.47999 5.48290 5.52729 5.57114 5.67345 5.70597 5.72429 5.74896 5.82992 5.92737 5.96308 6.09386 6.19483 6.21248 6.25281 6.31994 6.37267 6.58645 6.74020 6.88561 7.23183 7.44184 7.92840 7.96366 8.36644 9.14611 9.87447 10.07123 11.35822 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012196 B = 0.003379 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.259545 B = 8285.552930 C = 9863.848795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.079 3.921 3 N -0.488 5.488 4 C 0.243 3.757 5 C -0.089 4.089 6 C -0.145 4.145 7 C -0.152 4.152 8 O -0.174 6.174 9 C -0.115 4.115 10 C 0.607 3.393 11 O -0.516 6.516 12 N -0.591 5.591 13 C 0.091 3.909 14 C -0.149 4.149 15 C 0.183 3.817 16 H 0.058 0.942 17 N -0.747 5.747 18 C -0.245 4.245 19 H 0.091 0.909 20 C 0.006 3.994 21 N -0.933 5.933 22 Si 0.883 3.117 23 H -0.284 1.284 24 H -0.278 1.278 25 H -0.291 1.291 26 C -0.139 4.139 27 C 0.148 3.852 28 H 0.078 0.922 29 C -0.140 4.140 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.139 0.861 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.073 0.927 40 H 0.057 0.943 41 H 0.081 0.919 42 H 0.361 0.639 43 H 0.260 0.740 44 H 0.080 0.920 45 H 0.063 0.937 46 H 0.077 0.923 47 H 0.049 0.951 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.271 18.080 -10.165 24.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.045 4.045 3 N -0.218 5.218 4 C 0.038 3.962 5 C -0.108 4.108 6 C -0.182 4.182 7 C -0.190 4.190 8 O -0.061 6.061 9 C -0.169 4.169 10 C 0.394 3.606 11 O -0.395 6.395 12 N -0.323 5.323 13 C -0.032 4.032 14 C -0.190 4.190 15 C 0.073 3.927 16 H 0.076 0.924 17 N -0.389 5.389 18 C -0.375 4.375 19 H 0.108 0.892 20 C -0.190 4.190 21 N -0.580 5.580 22 Si 0.714 3.286 23 H -0.210 1.210 24 H -0.204 1.204 25 H -0.217 1.217 26 C -0.178 4.178 27 C 0.046 3.954 28 H 0.096 0.904 29 C -0.197 4.197 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.116 0.884 33 H 0.156 0.844 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.128 0.872 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.100 0.900 42 H 0.194 0.806 43 H 0.070 0.930 44 H 0.098 0.902 45 H 0.082 0.918 46 H 0.096 0.904 47 H 0.068 0.932 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.759 18.394 -10.275 24.632 hybrid contribution 0.033 -0.905 1.407 1.673 sum -12.727 17.490 -8.868 23.377 Atomic orbital electron populations 1.20386 0.85356 1.04358 1.03600 1.22007 0.98203 0.86362 0.97959 1.70247 1.00169 1.31109 1.20235 1.25466 0.94148 0.80055 0.96483 1.20219 0.93288 0.89478 1.07807 1.23120 1.04422 0.91671 0.98964 1.23147 1.03935 1.00128 0.91778 1.84656 1.29388 1.22362 1.69736 1.23173 0.81071 0.96452 1.16221 1.16551 0.85512 0.81137 0.77400 1.90876 1.16397 1.80647 1.51599 1.48146 1.07065 1.06846 1.70194 1.22424 0.78731 1.02055 0.99945 1.22628 1.01480 0.99142 0.95713 1.20151 0.89831 0.90947 0.91745 0.92413 1.42784 1.12410 1.73847 1.09870 1.19061 0.86710 1.32705 0.99023 0.89156 1.24665 0.95902 1.00773 0.97647 1.69695 1.11456 1.46942 1.29948 0.86568 0.79414 0.77982 0.84655 1.21024 1.20399 1.21726 1.22354 0.97009 1.01407 0.97054 1.21368 0.95956 0.79544 0.98531 0.90426 1.22214 0.92807 1.00380 1.04266 0.90201 0.90652 0.88447 0.84363 0.87055 0.87275 0.87159 0.87992 0.88130 0.90900 0.92390 0.90006 0.80629 0.93013 0.90177 0.91819 0.90434 0.93237 0.91713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 9.94 36.00 0.36 -0.50 16 2 C 0.08 1.04 7.16 -82.47 -0.59 0.45 16 3 N -0.49 -6.28 10.79 -7.07 -0.08 -6.35 16 4 C 0.24 2.89 7.87 -12.79 -0.10 2.78 16 5 C -0.09 -0.74 6.33 -91.77 -0.58 -1.32 16 6 C -0.14 -0.96 10.13 -26.69 -0.27 -1.23 16 7 C -0.15 -0.97 10.24 -26.69 -0.27 -1.24 16 8 O -0.17 -2.29 7.26 4.41 0.03 -2.25 16 9 C -0.11 -1.60 6.89 -36.84 -0.25 -1.86 16 10 C 0.61 8.81 7.47 -12.83 -0.10 8.71 16 11 O -0.52 -7.76 10.34 5.21 0.05 -7.71 16 12 N -0.59 -8.33 2.97 -166.73 -0.50 -8.82 16 13 C 0.09 1.25 6.34 -3.71 -0.02 1.23 16 14 C -0.15 -2.47 5.66 -26.62 -0.15 -2.62 16 15 C 0.18 3.34 2.73 -67.89 -0.19 3.15 16 16 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 17 N -0.75 -17.11 4.92 -53.39 -0.26 -17.37 16 18 C -0.25 -6.70 10.41 -15.06 -0.16 -6.86 16 19 H 0.09 2.63 8.06 -52.48 -0.42 2.21 16 20 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 21 N -0.93 -28.81 13.97 55.49 0.78 -28.04 16 22 Si 0.88 21.88 27.73 -169.99 -4.71 17.17 16 23 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.53 6.52 56.52 0.37 -6.16 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 26 C -0.14 -2.14 4.85 -26.60 -0.13 -2.27 16 27 C 0.15 2.02 3.49 -67.60 -0.24 1.79 16 28 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 29 C -0.14 -1.81 7.61 37.16 0.28 -1.52 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.10 1.09 6.37 -51.93 -0.33 0.76 16 33 H 0.14 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.11 0.86 7.87 -51.93 -0.41 0.45 16 35 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.10 1.35 3.76 -55.13 -0.21 1.15 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 42 H 0.36 8.26 5.66 -40.82 -0.23 8.03 16 43 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 44 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 46 H 0.08 1.04 6.57 -51.93 -0.34 0.70 16 47 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.06 0.92 6.92 -51.93 -0.36 0.56 16 LS Contribution 378.78 15.07 5.71 5.71 Total: -1.00 -31.98 378.78 -8.87 -40.84 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -7.38 Total: 8.06 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -2.50 Total: -1.22 kcal Atomic # 7 Polarization: -60.53 SS G_CDS: -0.06 Total: -60.59 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.09 Total: -9.96 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.71 Total: 17.17 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.98 -8.87 -40.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044771821.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.513 kcal (2) G-P(sol) polarization free energy of solvation -31.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds