Wall clock time and date at job start Tue Mar 31 2020 17:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.33694 * 126.27712 * 2 1 4 4 C 1.30612 * 108.99619 * 180.02562 * 3 2 1 5 5 C 1.50698 * 125.42160 * 180.02562 * 4 3 2 6 6 C 1.53001 * 117.49917 * 8.74735 * 5 4 3 7 7 C 1.52995 * 117.49894 * 300.08708 * 5 4 3 8 8 O 1.33666 * 109.15446 * 0.02562 * 4 3 2 9 9 C 1.35346 * 107.68687 * 359.97438 * 8 4 3 10 10 C 1.46722 * 126.64311 * 180.02562 * 9 8 4 11 11 O 1.21690 * 119.99171 * 180.02562 * 10 9 8 12 12 N 1.34775 * 120.00207 * 0.02562 * 10 9 8 13 13 C 1.46499 * 119.99678 * 180.02562 * 12 10 9 14 14 H 1.08992 * 109.49995 * 325.06784 * 13 12 10 15 15 C 1.53034 * 109.49490 * 204.99805 * 13 12 10 16 16 C 1.53046 * 109.53843 * 178.68550 * 15 13 12 17 17 C 1.53188 * 109.31007 * 61.36766 * 16 15 13 18 18 H 1.09001 * 109.58909 * 65.29686 * 17 16 15 19 19 C 1.53001 * 109.58859 * 185.57849 * 17 16 15 20 20 N 1.46928 * 108.77978 * 305.36362 * 17 16 15 21 21 C 1.36929 * 120.63412 * 233.63134 * 20 17 16 22 22 H 1.08005 * 119.99943 * 29.01397 * 21 20 17 23 23 C 1.38817 * 120.00042 * 209.00696 * 21 20 17 24 24 N 1.31610 * 119.99851 * 15.01790 * 23 21 20 25 25 Si 1.86800 * 119.99898 * 195.01683 * 23 21 20 26 26 H 1.48499 * 109.46972 * 90.00074 * 25 23 21 27 27 H 1.48497 * 109.47271 * 210.00372 * 25 23 21 28 28 H 1.48503 * 109.47037 * 330.00187 * 25 23 21 29 29 C 1.46934 * 118.73259 * 53.60914 * 20 17 16 30 30 H 1.09000 * 109.47052 * 89.96795 * 1 2 3 31 31 H 1.08997 * 109.47250 * 209.97020 * 1 2 3 32 32 H 1.09002 * 109.46595 * 329.97427 * 1 2 3 33 33 H 1.09000 * 115.54823 * 154.41950 * 5 4 3 34 34 H 1.08994 * 117.49766 * 0.02562 * 6 5 4 35 35 H 1.08998 * 117.49450 * 145.01813 * 6 5 4 36 36 H 1.09005 * 117.50004 * 214.97775 * 7 5 4 37 37 H 1.08995 * 117.49915 * 0.02562 * 7 5 4 38 38 H 0.96999 * 120.00029 * 0.02562 * 12 10 9 39 39 H 1.09005 * 109.46472 * 298.70892 * 15 13 12 40 40 H 1.09006 * 109.46108 * 58.68138 * 15 13 12 41 41 H 1.09003 * 109.49478 * 181.31835 * 16 15 13 42 42 H 1.08992 * 109.49621 * 301.41602 * 16 15 13 43 43 H 1.08997 * 109.47058 * 59.99411 * 19 17 16 44 44 H 1.08996 * 109.47455 * 180.02562 * 19 17 16 45 45 H 1.09009 * 109.46991 * 300.00279 * 19 17 16 46 46 H 0.97002 * 120.00157 * 179.97438 * 24 23 21 47 47 H 1.08995 * 109.58128 * 186.60647 * 29 20 17 48 48 H 1.08995 * 109.58431 * 66.18360 * 29 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2981 1.0778 0.0000 4 6 3.5453 0.6898 -0.0006 5 6 4.7441 1.6030 -0.0002 6 6 4.4933 3.0980 0.2073 7 6 4.8935 2.5730 -1.1738 8 8 3.5890 -0.6461 -0.0015 9 6 2.3136 -1.0993 -0.0009 10 6 1.8826 -2.5018 -0.0011 11 8 0.6965 -2.7736 -0.0010 12 7 2.8003 -3.4888 -0.0013 13 6 2.3698 -4.8891 -0.0020 14 1 1.4577 -4.9896 0.5861 15 6 3.4694 -5.7617 0.6075 16 6 3.0075 -7.2205 0.6373 17 6 2.7485 -7.6992 -0.7946 18 1 3.6853 -7.7091 -1.3517 19 6 2.1548 -9.1091 -0.7647 20 7 1.8000 -6.7790 -1.4367 21 6 0.6547 -7.2521 -2.0193 22 1 0.1914 -8.1535 -1.6459 23 6 0.0889 -6.5730 -3.0897 24 7 0.7867 -5.6619 -3.7339 25 14 -1.6629 -6.9525 -3.6157 26 1 -2.6030 -6.0695 -2.8797 27 1 -1.8033 -6.7178 -5.0753 28 1 -1.9749 -8.3719 -3.3104 29 6 2.1036 -5.3414 -1.4412 30 1 -0.3633 0.0006 -1.0277 31 1 -0.3633 -0.8902 0.5133 32 1 -0.3632 0.8898 0.5143 33 1 5.6556 1.1819 0.4239 34 1 3.4613 3.4209 0.3439 35 1 5.2401 3.6604 0.7676 36 1 5.9034 2.7906 -1.5215 37 1 4.1245 2.5511 -1.9459 38 1 3.7458 -3.2720 -0.0010 39 1 4.3741 -5.6795 0.0051 40 1 3.6779 -5.4263 1.6235 41 1 3.7817 -7.8380 1.0930 42 1 2.0892 -7.2995 1.2191 43 1 1.2158 -9.0962 -0.2115 44 1 1.9717 -9.4480 -1.7843 45 1 2.8546 -9.7877 -0.2767 46 1 0.3915 -5.1876 -4.4821 47 1 1.2552 -4.7901 -1.8465 48 1 2.9874 -5.1566 -2.0518 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071883794.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:16 Heat of formation + Delta-G solvation = 29.575891 kcal Electronic energy + Delta-G solvation = -29294.674317 eV Core-core repulsion = 25352.647663 eV Total energy + Delta-G solvation = -3942.026654 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.46962 -39.45832 -37.72920 -37.51480 -35.40562 -34.37922 -32.83134 -31.53565 -30.65823 -29.85135 -27.93840 -26.13380 -25.25334 -24.61187 -22.82161 -22.36420 -21.94703 -20.95642 -20.68190 -20.17888 -19.34294 -17.89036 -17.04284 -16.69115 -16.45147 -15.71583 -15.21204 -15.02612 -14.82235 -14.22896 -14.07088 -13.79926 -13.65890 -13.38041 -13.23159 -13.15298 -12.77039 -12.66914 -12.40656 -12.08590 -11.94306 -11.89362 -11.56904 -11.45770 -11.13651 -11.05976 -10.88752 -10.85113 -10.76317 -10.71949 -10.55581 -10.40549 -10.26689 -9.99161 -9.90551 -9.53900 -9.49152 -8.83715 -8.53074 -8.41896 -6.62309 -5.73519 -3.18439 0.83017 2.26625 2.29322 3.28902 3.38608 3.43721 3.44287 3.49940 3.50889 3.78761 4.33686 4.46583 4.53535 4.54857 4.73737 4.93843 5.25503 5.26349 5.31702 5.35693 5.43839 5.50943 5.52617 5.56995 5.64916 5.66424 5.74520 5.77327 5.89763 5.93638 5.94353 6.08571 6.25404 6.27475 6.34670 6.37775 6.43357 6.46553 6.61401 6.70129 6.83560 7.03462 7.11751 7.28048 7.49765 7.72663 7.79423 7.87327 8.37988 8.50440 9.24478 9.88748 10.43808 11.34508 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014038 B = 0.003187 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.134045 B = 8783.072352 C = 9882.123914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.076 3.924 3 N -0.486 5.486 4 C 0.242 3.758 5 C -0.085 4.085 6 C -0.145 4.145 7 C -0.153 4.153 8 O -0.186 6.186 9 C -0.106 4.106 10 C 0.604 3.396 11 O -0.504 6.504 12 N -0.706 5.706 13 C 0.115 3.885 14 H 0.086 0.914 15 C -0.117 4.117 16 C -0.126 4.126 17 C 0.164 3.836 18 H 0.025 0.975 19 C -0.136 4.136 20 N -0.583 5.583 21 C -0.253 4.253 22 H 0.071 0.929 23 C 0.006 3.994 24 N -0.901 5.901 25 Si 0.901 3.099 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.279 1.279 29 C 0.167 3.833 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.136 0.864 34 H 0.112 0.888 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.103 0.897 38 H 0.397 0.603 39 H 0.059 0.941 40 H 0.051 0.949 41 H 0.056 0.944 42 H 0.061 0.939 43 H 0.054 0.946 44 H 0.061 0.939 45 H 0.038 0.962 46 H 0.253 0.747 47 H 0.097 0.903 48 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.096 12.910 9.504 18.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.048 4.048 3 N -0.216 5.216 4 C 0.037 3.963 5 C -0.104 4.104 6 C -0.182 4.182 7 C -0.191 4.191 8 O -0.072 6.072 9 C -0.161 4.161 10 C 0.388 3.612 11 O -0.380 6.380 12 N -0.355 5.355 13 C 0.011 3.989 14 H 0.104 0.896 15 C -0.155 4.155 16 C -0.165 4.165 17 C 0.058 3.942 18 H 0.043 0.957 19 C -0.194 4.194 20 N -0.306 5.306 21 C -0.383 4.383 22 H 0.089 0.911 23 C -0.193 4.193 24 N -0.545 5.545 25 Si 0.731 3.269 26 H -0.213 1.213 27 H -0.218 1.218 28 H -0.204 1.204 29 C 0.040 3.960 30 H 0.101 0.899 31 H 0.115 0.885 32 H 0.092 0.908 33 H 0.154 0.846 34 H 0.130 0.870 35 H 0.126 0.874 36 H 0.128 0.872 37 H 0.122 0.878 38 H 0.230 0.770 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.073 0.927 44 H 0.080 0.920 45 H 0.057 0.943 46 H 0.063 0.937 47 H 0.115 0.885 48 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 9.039 13.315 9.343 18.609 hybrid contribution -0.009 -0.688 -0.391 0.791 sum 9.031 12.627 8.952 17.920 Atomic orbital electron populations 1.20387 0.85204 1.04184 1.03909 1.22022 0.98323 0.86270 0.98196 1.70214 1.00134 1.31228 1.20005 1.25203 0.94206 0.79154 0.97769 1.20130 0.93092 0.89337 1.07816 1.23118 1.04424 0.91656 0.99042 1.23162 1.03917 1.00093 0.91921 1.84401 1.30055 1.23223 1.69546 1.23213 0.80817 0.96728 1.15387 1.16278 0.86121 0.81014 0.77779 1.90904 1.15542 1.81384 1.50201 1.46007 1.09046 1.06932 1.73562 1.22129 0.97500 0.76891 1.02408 0.89610 1.21686 0.98067 0.96248 0.99478 1.22048 1.00431 0.94281 0.99782 1.20496 0.92737 0.90319 0.90664 0.95722 1.21801 0.99914 0.95654 1.02010 1.44019 1.21396 1.00218 1.64969 1.19157 0.99801 1.10373 1.08927 0.91103 1.25083 0.98725 0.99640 0.95848 1.69992 1.35201 1.27912 1.21373 0.86312 0.85158 0.78015 0.77413 1.21275 1.21832 1.20444 1.21103 1.00802 0.85340 0.88724 0.89907 0.88468 0.90760 0.84633 0.86992 0.87388 0.87234 0.87845 0.76983 0.92184 0.92995 0.92583 0.91983 0.92742 0.92004 0.94339 0.93708 0.88533 0.96438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.13 9.87 36.01 0.36 -0.78 16 2 C 0.08 1.21 7.16 -82.46 -0.59 0.62 16 3 N -0.49 -7.12 10.79 -7.07 -0.08 -7.20 16 4 C 0.24 3.17 7.86 -12.80 -0.10 3.07 16 5 C -0.08 -0.73 6.33 -91.77 -0.58 -1.31 16 6 C -0.15 -1.00 10.13 -26.69 -0.27 -1.27 16 7 C -0.15 -1.09 10.24 -26.70 -0.27 -1.36 16 8 O -0.19 -2.73 10.57 4.41 0.05 -2.68 16 9 C -0.11 -1.77 7.18 -36.84 -0.26 -2.04 16 10 C 0.60 11.31 7.76 -12.83 -0.10 11.21 16 11 O -0.50 -10.98 14.45 5.20 0.08 -10.90 16 12 N -0.71 -12.19 5.08 -54.99 -0.28 -12.47 16 13 C 0.12 2.25 2.61 -67.81 -0.18 2.07 16 14 H 0.09 1.86 7.57 -51.93 -0.39 1.47 16 15 C -0.12 -1.88 5.35 -26.69 -0.14 -2.03 16 16 C -0.13 -2.11 5.37 -26.61 -0.14 -2.26 16 17 C 0.16 3.34 3.50 -67.60 -0.24 3.11 16 18 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 19 C -0.14 -2.54 7.94 37.16 0.30 -2.24 16 20 N -0.58 -14.43 2.99 -164.77 -0.49 -14.92 16 21 C -0.25 -6.89 8.61 -15.06 -0.13 -7.02 16 22 H 0.07 1.88 6.20 -52.48 -0.33 1.55 16 23 C 0.01 0.17 4.96 -17.43 -0.09 0.08 16 24 N -0.90 -26.68 11.14 55.49 0.62 -26.07 16 25 Si 0.90 22.33 29.58 -169.99 -5.03 17.30 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 28 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 29 C 0.17 4.05 4.87 -3.70 -0.02 4.03 16 30 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.10 1.49 6.47 -51.93 -0.34 1.16 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.14 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.11 0.93 7.87 -51.93 -0.41 0.52 16 35 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.11 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.40 5.77 8.40 -40.82 -0.34 5.42 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.05 1.03 7.40 -51.93 -0.38 0.65 16 44 H 0.06 1.24 7.66 -51.93 -0.40 0.85 16 45 H 0.04 0.59 8.14 -51.92 -0.42 0.16 16 46 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 47 H 0.10 2.75 6.06 -51.93 -0.31 2.44 16 48 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 387.45 15.07 5.84 5.84 Total: -1.00 -32.42 387.45 -9.29 -41.71 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -7.53 Total: 5.50 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: -2.46 Total: 3.88 kcal Atomic # 7 Polarization: -60.42 SS G_CDS: -0.23 Total: -60.65 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: 0.12 Total: -13.58 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.03 Total: 17.30 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.42 -9.29 -41.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071883794.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.286 kcal (2) G-P(sol) polarization free energy of solvation -32.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds