Wall clock time and date at job start Tue Mar 31 2020 17:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.33694 * 126.27712 * 2 1 4 4 C 1.30612 * 108.99619 * 180.02562 * 3 2 1 5 5 C 1.50698 * 125.42160 * 180.02562 * 4 3 2 6 6 C 1.53001 * 117.49917 * 8.74735 * 5 4 3 7 7 C 1.52995 * 117.49894 * 300.08708 * 5 4 3 8 8 O 1.33666 * 109.15446 * 0.02562 * 4 3 2 9 9 C 1.35346 * 107.68687 * 359.97438 * 8 4 3 10 10 C 1.46722 * 126.64311 * 180.02562 * 9 8 4 11 11 O 1.21690 * 119.99171 * 180.02562 * 10 9 8 12 12 N 1.34775 * 120.00207 * 0.02562 * 10 9 8 13 13 C 1.46499 * 119.99678 * 180.02562 * 12 10 9 14 14 H 1.08992 * 109.49995 * 325.06784 * 13 12 10 15 15 C 1.53034 * 109.49490 * 204.99805 * 13 12 10 16 16 C 1.53046 * 109.53843 * 178.68550 * 15 13 12 17 17 C 1.53188 * 109.31007 * 61.36766 * 16 15 13 18 18 H 1.09001 * 109.58909 * 65.29686 * 17 16 15 19 19 C 1.53001 * 109.58859 * 185.57849 * 17 16 15 20 20 N 1.46928 * 108.77978 * 305.36362 * 17 16 15 21 21 C 1.36929 * 120.63412 * 233.63134 * 20 17 16 22 22 H 1.08005 * 119.99943 * 29.01397 * 21 20 17 23 23 C 1.38817 * 120.00042 * 209.00696 * 21 20 17 24 24 N 1.31610 * 119.99851 * 15.01790 * 23 21 20 25 25 Si 1.86800 * 119.99898 * 195.01683 * 23 21 20 26 26 H 1.48499 * 109.46972 * 90.00074 * 25 23 21 27 27 H 1.48497 * 109.47271 * 210.00372 * 25 23 21 28 28 H 1.48503 * 109.47037 * 330.00187 * 25 23 21 29 29 C 1.46934 * 118.73259 * 53.60914 * 20 17 16 30 30 H 1.09000 * 109.47052 * 89.96795 * 1 2 3 31 31 H 1.08997 * 109.47250 * 209.97020 * 1 2 3 32 32 H 1.09002 * 109.46595 * 329.97427 * 1 2 3 33 33 H 1.09000 * 115.54823 * 154.41950 * 5 4 3 34 34 H 1.08994 * 117.49766 * 0.02562 * 6 5 4 35 35 H 1.08998 * 117.49450 * 145.01813 * 6 5 4 36 36 H 1.09005 * 117.50004 * 214.97775 * 7 5 4 37 37 H 1.08995 * 117.49915 * 0.02562 * 7 5 4 38 38 H 0.96999 * 120.00029 * 0.02562 * 12 10 9 39 39 H 1.09005 * 109.46472 * 298.70892 * 15 13 12 40 40 H 1.09006 * 109.46108 * 58.68138 * 15 13 12 41 41 H 1.09003 * 109.49478 * 181.31835 * 16 15 13 42 42 H 1.08992 * 109.49621 * 301.41602 * 16 15 13 43 43 H 1.08997 * 109.47058 * 59.99411 * 19 17 16 44 44 H 1.08996 * 109.47455 * 180.02562 * 19 17 16 45 45 H 1.09009 * 109.46991 * 300.00279 * 19 17 16 46 46 H 0.97002 * 120.00157 * 179.97438 * 24 23 21 47 47 H 1.08995 * 109.58128 * 186.60647 * 29 20 17 48 48 H 1.08995 * 109.58431 * 66.18360 * 29 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2981 1.0778 0.0000 4 6 3.5453 0.6898 -0.0006 5 6 4.7441 1.6030 -0.0002 6 6 4.4933 3.0980 0.2073 7 6 4.8935 2.5730 -1.1738 8 8 3.5890 -0.6461 -0.0015 9 6 2.3136 -1.0993 -0.0009 10 6 1.8826 -2.5018 -0.0011 11 8 0.6965 -2.7736 -0.0010 12 7 2.8003 -3.4888 -0.0013 13 6 2.3698 -4.8891 -0.0020 14 1 1.4577 -4.9896 0.5861 15 6 3.4694 -5.7617 0.6075 16 6 3.0075 -7.2205 0.6373 17 6 2.7485 -7.6992 -0.7946 18 1 3.6853 -7.7091 -1.3517 19 6 2.1548 -9.1091 -0.7647 20 7 1.8000 -6.7790 -1.4367 21 6 0.6547 -7.2521 -2.0193 22 1 0.1914 -8.1535 -1.6459 23 6 0.0889 -6.5730 -3.0897 24 7 0.7867 -5.6619 -3.7339 25 14 -1.6629 -6.9525 -3.6157 26 1 -2.6030 -6.0695 -2.8797 27 1 -1.8033 -6.7178 -5.0753 28 1 -1.9749 -8.3719 -3.3104 29 6 2.1036 -5.3414 -1.4412 30 1 -0.3633 0.0006 -1.0277 31 1 -0.3633 -0.8902 0.5133 32 1 -0.3632 0.8898 0.5143 33 1 5.6556 1.1819 0.4239 34 1 3.4613 3.4209 0.3439 35 1 5.2401 3.6604 0.7676 36 1 5.9034 2.7906 -1.5215 37 1 4.1245 2.5511 -1.9459 38 1 3.7458 -3.2720 -0.0010 39 1 4.3741 -5.6795 0.0051 40 1 3.6779 -5.4263 1.6235 41 1 3.7817 -7.8380 1.0930 42 1 2.0892 -7.2995 1.2191 43 1 1.2158 -9.0962 -0.2115 44 1 1.9717 -9.4480 -1.7843 45 1 2.8546 -9.7877 -0.2767 46 1 0.3915 -5.1876 -4.4821 47 1 1.2552 -4.7901 -1.8465 48 1 2.9874 -5.1566 -2.0518 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071883794.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:16 Heat of formation + Delta-G solvation = 6.946566 kcal Electronic energy + Delta-G solvation = -29295.655598 eV Core-core repulsion = 25352.647663 eV Total energy + Delta-G solvation = -3943.007935 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.62450 -40.98726 -39.28453 -38.26139 -36.65305 -35.93172 -34.68364 -32.83829 -32.08783 -31.72149 -29.17596 -27.75225 -26.89760 -25.85291 -24.08880 -23.43879 -23.16518 -22.14723 -21.93989 -21.57652 -20.99875 -19.24810 -18.38611 -18.13209 -17.65566 -17.38756 -16.88138 -16.02229 -15.96973 -15.78196 -15.52678 -15.48830 -15.18350 -15.00685 -14.50737 -14.37301 -14.33186 -14.11566 -13.57908 -13.53122 -13.15016 -13.07111 -12.76058 -12.74545 -12.59689 -12.54091 -12.41637 -12.29737 -12.14861 -12.08612 -11.97582 -11.70084 -11.67174 -11.56398 -11.48556 -11.21633 -11.11271 -10.55861 -10.32087 -9.82501 -8.64504 -7.85796 -5.32238 -0.39123 1.13170 1.15345 1.41400 1.46138 1.51806 1.88482 2.03446 2.50259 2.65515 2.87802 3.30567 3.48926 3.53001 3.68865 3.74955 3.89174 3.94679 4.04059 4.06240 4.21712 4.27601 4.36069 4.37425 4.56176 4.58283 4.69080 4.70333 4.77096 4.77565 4.80692 4.86757 4.93200 4.99801 5.04956 5.05369 5.14390 5.19947 5.24145 5.25982 5.28563 5.36205 5.54341 5.59958 5.69970 5.75675 6.22357 6.40784 6.48154 6.95882 7.15362 7.88473 8.37968 9.19465 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014038 B = 0.003187 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.134045 B = 8783.072352 C = 9882.123914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.076 3.924 3 N -0.503 5.503 4 C 0.257 3.743 5 C -0.105 4.105 6 C -0.132 4.132 7 C -0.145 4.145 8 O -0.186 6.186 9 C -0.135 4.135 10 C 0.603 3.397 11 O -0.545 6.545 12 N -0.696 5.696 13 C 0.131 3.869 14 H 0.062 0.938 15 C -0.108 4.108 16 C -0.117 4.117 17 C 0.152 3.848 18 H 0.021 0.979 19 C -0.129 4.129 20 N -0.602 5.602 21 C -0.249 4.249 22 H 0.077 0.923 23 C -0.054 4.054 24 N -0.935 5.935 25 Si 0.957 3.043 26 H -0.294 1.294 27 H -0.296 1.296 28 H -0.261 1.261 29 C 0.179 3.821 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.164 0.836 34 H 0.095 0.905 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.085 0.915 38 H 0.412 0.588 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.055 0.945 43 H 0.047 0.953 44 H 0.037 0.963 45 H 0.079 0.921 46 H 0.244 0.756 47 H 0.046 0.954 48 H -0.004 1.004 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.574 13.376 11.509 21.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.048 4.048 3 N -0.232 5.232 4 C 0.052 3.948 5 C -0.124 4.124 6 C -0.169 4.169 7 C -0.183 4.183 8 O -0.074 6.074 9 C -0.190 4.190 10 C 0.389 3.611 11 O -0.425 6.425 12 N -0.346 5.346 13 C 0.025 3.975 14 H 0.080 0.920 15 C -0.146 4.146 16 C -0.156 4.156 17 C 0.047 3.953 18 H 0.039 0.961 19 C -0.187 4.187 20 N -0.326 5.326 21 C -0.379 4.379 22 H 0.095 0.905 23 C -0.249 4.249 24 N -0.582 5.582 25 Si 0.786 3.214 26 H -0.222 1.222 27 H -0.222 1.222 28 H -0.185 1.185 29 C 0.052 3.948 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.116 0.884 33 H 0.181 0.819 34 H 0.113 0.887 35 H 0.158 0.842 36 H 0.157 0.843 37 H 0.103 0.897 38 H 0.248 0.752 39 H 0.090 0.910 40 H 0.104 0.896 41 H 0.116 0.884 42 H 0.074 0.926 43 H 0.066 0.934 44 H 0.057 0.943 45 H 0.098 0.902 46 H 0.053 0.947 47 H 0.065 0.935 48 H 0.014 0.986 Dipole moment (debyes) X Y Z Total from point charges 11.556 13.763 11.378 21.270 hybrid contribution -0.678 -0.738 -1.010 1.423 sum 10.878 13.025 10.368 19.886 Atomic orbital electron populations 1.20385 0.84615 1.04569 1.03914 1.22338 0.99068 0.86577 0.96807 1.70280 1.00774 1.30645 1.21539 1.26345 0.95232 0.78930 0.94259 1.20629 0.92272 0.89537 1.09929 1.23236 1.04513 0.90097 0.99074 1.23274 1.05039 0.98599 0.91373 1.84387 1.28922 1.24077 1.69972 1.22715 0.81915 0.95796 1.18548 1.16520 0.85728 0.82048 0.76846 1.90874 1.17192 1.82350 1.52041 1.45826 1.09743 1.05958 1.73063 1.21699 0.98440 0.78555 0.98798 0.92018 1.21667 0.96691 0.95057 1.01211 1.21952 1.01599 0.95083 0.96964 1.20823 0.91523 0.90535 0.92410 0.96083 1.21734 1.00645 0.95350 1.00943 1.44313 1.21938 1.01116 1.65226 1.19506 1.00549 1.09857 1.08012 0.90514 1.25809 1.02088 1.00342 0.96686 1.70160 1.36483 1.29491 1.22038 0.85401 0.81071 0.78425 0.76471 1.22175 1.22242 1.18549 1.20764 0.97589 0.85207 0.91242 0.90023 0.89978 0.88368 0.81865 0.88653 0.84184 0.84270 0.89669 0.75156 0.90957 0.89581 0.88438 0.92587 0.93406 0.94343 0.90240 0.94707 0.93538 0.98622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.29 9.87 71.24 0.70 -1.59 16 2 C 0.08 2.47 7.16 41.83 0.30 2.77 16 3 N -0.50 -14.56 10.79 -291.06 -3.14 -17.70 16 4 C 0.26 6.46 7.86 88.29 0.69 7.16 16 5 C -0.10 -1.53 6.33 -11.54 -0.07 -1.60 16 6 C -0.13 -1.43 10.13 30.62 0.31 -1.12 16 7 C -0.15 -1.66 10.24 30.62 0.31 -1.35 16 8 O -0.19 -5.38 10.57 -7.13 -0.08 -5.45 16 9 C -0.13 -4.61 7.18 24.05 0.17 -4.44 16 10 C 0.60 23.57 7.76 86.46 0.67 24.24 16 11 O -0.54 -25.31 14.45 -4.32 -0.06 -25.38 16 12 N -0.70 -24.41 5.08 -446.10 -2.26 -26.67 16 13 C 0.13 5.15 2.61 45.07 0.12 5.27 16 14 H 0.06 2.76 7.57 -2.39 -0.02 2.74 16 15 C -0.11 -3.23 5.35 30.62 0.16 -3.06 16 16 C -0.12 -3.58 5.37 30.67 0.16 -3.41 16 17 C 0.15 6.01 3.50 44.97 0.16 6.16 16 18 H 0.02 0.86 8.14 -2.39 -0.02 0.85 16 19 C -0.13 -4.60 7.94 71.98 0.57 -4.02 16 20 N -0.60 -30.44 2.99 -675.21 -2.02 -32.46 16 21 C -0.25 -13.89 8.61 84.04 0.72 -13.17 16 22 H 0.08 4.11 6.20 -2.91 -0.02 4.09 16 23 C -0.05 -3.18 4.96 84.86 0.42 -2.76 16 24 N -0.94 -58.38 11.14 21.65 0.24 -58.14 16 25 Si 0.96 47.56 29.58 68.60 2.03 49.59 16 26 H -0.29 -14.87 7.11 99.48 0.71 -14.16 16 27 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 28 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 29 C 0.18 9.06 4.87 86.36 0.42 9.48 16 30 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.08 2.68 6.47 -2.39 -0.02 2.67 16 32 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.16 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.09 1.40 7.87 -2.39 -0.02 1.39 16 35 H 0.14 0.65 8.14 -2.39 -0.02 0.64 16 36 H 0.14 0.80 8.14 -2.38 -0.02 0.78 16 37 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.41 11.75 8.40 -92.71 -0.78 10.97 16 39 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 40 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 41 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 42 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.05 1.74 7.40 -2.39 -0.02 1.72 16 44 H 0.04 1.51 7.66 -2.39 -0.02 1.50 16 45 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 46 H 0.24 14.98 8.31 -92.71 -0.77 14.21 16 47 H 0.05 2.82 6.06 -2.39 -0.01 2.81 16 48 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 Total: -1.00 -76.13 387.45 0.74 -75.40 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: 0.20 Total: 22.29 kcal Atomic # 6 Polarization: 12.72 SS G_CDS: 5.83 Total: 18.55 kcal Atomic # 7 Polarization: -127.80 SS G_CDS: -7.18 Total: -134.98 kcal Atomic # 8 Polarization: -30.69 SS G_CDS: -0.14 Total: -30.83 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 2.03 Total: 49.59 kcal Total: -76.13 0.74 -75.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071883794.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.343 kcal (2) G-P(sol) polarization free energy of solvation -76.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds