Wall clock time and date at job start Tue Mar 31 2020 18:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.46653 * 2 1 4 4 C 1.38027 * 119.50760 * 125.00320 * 3 2 1 5 5 C 1.39922 * 119.13186 * 179.72380 * 4 3 2 6 6 C 1.48162 * 120.89452 * 180.27181 * 5 4 3 7 7 O 1.21507 * 119.99634 * 0.02562 * 6 5 4 8 8 N 1.34778 * 120.00093 * 179.97438 * 6 5 4 9 9 C 1.46502 * 119.99796 * 174.96847 * 8 6 5 10 10 C 1.53003 * 109.47116 * 304.32005 * 9 8 6 11 11 C 1.52995 * 109.46951 * 64.32331 * 9 8 6 12 12 N 1.46497 * 109.47374 * 59.99990 * 11 9 8 13 13 C 1.36936 * 120.00078 * 180.02562 * 12 11 9 14 14 H 1.08000 * 119.99669 * 359.97438 * 13 12 11 15 15 C 1.38810 * 119.99993 * 180.02562 * 13 12 11 16 16 N 1.31614 * 119.99913 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00205 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46959 * 59.99214 * 17 15 13 19 19 H 1.48495 * 109.47215 * 179.97438 * 17 15 13 20 20 H 1.48507 * 109.47012 * 300.00016 * 17 15 13 21 21 C 1.52997 * 109.46844 * 184.32402 * 9 8 6 22 22 C 1.53008 * 117.49907 * 132.83773 * 21 9 8 23 23 C 1.53001 * 117.50223 * 64.17783 * 21 9 8 24 24 C 1.39618 * 118.21479 * 0.25291 * 5 4 3 25 25 C 1.38848 * 118.94784 * 359.97438 * 24 5 4 26 26 O 1.35687 * 119.62108 * 180.02562 * 25 24 5 27 27 N 1.31871 * 119.51651 * 305.24646 * 3 2 1 28 28 H 1.08997 * 109.47355 * 59.99730 * 1 2 3 29 29 H 1.09002 * 109.46748 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47050 * 299.99645 * 1 2 3 31 31 H 1.08999 * 109.47230 * 240.00835 * 2 1 3 32 32 H 1.08997 * 109.47355 * 120.00270 * 2 1 3 33 33 H 1.07995 * 120.43431 * 0.02562 * 4 3 2 34 34 H 0.96999 * 119.99651 * 354.97724 * 8 6 5 35 35 H 1.08999 * 109.46918 * 60.00386 * 10 9 8 36 36 H 1.09001 * 109.47222 * 179.97438 * 10 9 8 37 37 H 1.08998 * 109.47153 * 300.00300 * 10 9 8 38 38 H 1.09001 * 109.46911 * 180.02562 * 11 9 8 39 39 H 1.09001 * 109.46906 * 299.99164 * 11 9 8 40 40 H 0.96997 * 119.99779 * 359.97438 * 12 11 9 41 41 H 0.97007 * 120.00048 * 180.02562 * 16 15 13 42 42 H 1.09001 * 115.55167 * 278.50717 * 21 9 8 43 43 H 1.08998 * 117.49855 * 359.97438 * 22 21 9 44 44 H 1.08999 * 117.49892 * 145.01805 * 22 21 9 45 45 H 1.08998 * 117.49648 * 214.97898 * 23 21 9 46 46 H 1.08999 * 117.50008 * 359.97438 * 23 21 9 47 47 H 1.08003 * 120.52155 * 180.02562 * 24 5 4 48 48 H 0.96703 * 114.00289 * 89.99892 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.9085 1.8322 0.9840 5 6 3.3743 3.1516 0.9731 6 6 4.3204 3.6329 2.0068 7 8 4.7023 2.8783 2.8792 8 7 4.7580 4.9073 1.9788 9 6 5.6051 5.4148 3.0610 10 6 4.8957 5.2126 4.4015 11 6 6.9336 4.6559 3.0674 12 7 7.6127 4.8496 1.7839 13 6 8.8277 4.2603 1.5564 14 1 9.2854 3.6532 2.3234 15 6 9.4715 4.4443 0.3404 16 7 8.9139 5.1846 -0.5940 17 14 11.1292 3.6410 0.0303 18 1 10.9942 2.1667 0.1455 19 1 11.6006 3.9895 -1.3340 20 1 12.1105 4.1279 1.0331 21 6 5.8705 6.9059 2.8444 22 6 5.6906 7.8372 4.0449 23 6 4.6704 7.8531 2.9039 24 6 2.9241 4.0022 -0.0383 25 6 2.0385 3.5086 -0.9870 26 8 1.5926 4.3233 -1.9762 27 7 1.6244 2.2541 -0.9372 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.2340 1.1434 1.7494 34 1 4.5120 5.4885 1.2422 35 1 4.7066 4.1502 4.5559 36 1 5.5262 5.5897 5.2068 37 1 3.9493 5.7532 4.3969 38 1 7.5636 5.0332 3.8728 39 1 6.7444 3.5936 3.2218 40 1 7.2015 5.3946 1.0949 41 1 9.3636 5.3129 -1.4439 42 1 6.6650 7.1441 2.1372 43 1 5.3829 7.3877 4.9890 44 1 6.3666 8.6883 4.1274 45 1 4.6756 8.7145 2.2361 46 1 3.6917 7.4139 3.0970 47 1 3.2601 5.0277 -0.0825 48 1 2.1436 4.3151 -2.7709 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267856430.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:37 Heat of formation + Delta-G solvation = -1.012266 kcal Electronic energy + Delta-G solvation = -29403.801636 eV Core-core repulsion = 25460.448579 eV Total energy + Delta-G solvation = -3943.353056 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.94723 -39.88977 -37.90885 -37.28204 -34.71900 -34.23182 -33.47479 -32.38458 -31.07292 -29.77624 -29.34306 -25.99355 -25.22796 -24.16054 -23.24800 -22.49346 -22.23661 -22.08917 -20.11881 -18.97914 -18.74203 -17.30585 -17.20027 -16.82151 -16.00534 -15.65715 -15.49261 -15.15646 -14.92442 -14.53204 -14.46098 -14.23152 -14.11428 -13.70616 -13.32317 -13.14316 -12.76349 -12.48282 -12.33405 -12.17206 -12.10207 -11.99210 -11.91785 -11.59885 -11.44313 -11.21964 -11.11023 -10.89850 -10.81128 -10.77277 -10.24398 -10.13344 -9.92451 -9.89215 -9.84300 -9.67855 -9.36288 -8.93572 -8.80890 -8.69356 -6.86550 -5.75540 -3.01742 0.65711 0.85400 2.91956 3.12783 3.41358 3.45138 3.49080 3.50545 3.75832 4.02602 4.29333 4.56161 4.60916 4.74944 4.83952 4.88162 5.02060 5.05150 5.09284 5.13546 5.15398 5.31699 5.34857 5.40937 5.55447 5.59770 5.61452 5.69454 5.71748 5.75936 5.87666 5.94479 5.99751 6.00623 6.09168 6.17339 6.21999 6.24048 6.31617 6.40135 6.49502 6.64605 6.85151 7.04750 7.32000 7.72172 7.74830 7.76700 8.40509 8.44036 9.55541 10.12996 10.48863 11.47588 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.008917 B = 0.003955 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3139.400007 B = 7078.150697 C = 8517.308057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.073 4.073 3 C 0.149 3.851 4 C -0.125 4.125 5 C -0.058 4.058 6 C 0.564 3.436 7 O -0.521 6.521 8 N -0.698 5.698 9 C 0.202 3.798 10 C -0.165 4.165 11 C 0.144 3.856 12 N -0.726 5.726 13 C -0.232 4.232 14 H 0.068 0.932 15 C -0.015 4.015 16 N -0.937 5.937 17 Si 0.905 3.095 18 H -0.287 1.287 19 H -0.292 1.292 20 H -0.286 1.286 21 C -0.151 4.151 22 C -0.171 4.171 23 C -0.183 4.183 24 C -0.158 4.158 25 C 0.311 3.689 26 O -0.481 6.481 27 N -0.489 5.489 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.151 0.849 34 H 0.398 0.602 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.052 0.948 38 H 0.025 0.975 39 H 0.045 0.955 40 H 0.381 0.619 41 H 0.254 0.746 42 H 0.123 0.877 43 H 0.099 0.901 44 H 0.093 0.907 45 H 0.093 0.907 46 H 0.091 0.909 47 H 0.145 0.855 48 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.872 -1.029 3.153 17.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 C 0.011 3.989 4 C -0.145 4.145 5 C -0.069 4.069 6 C 0.350 3.650 7 O -0.397 6.397 8 N -0.349 5.349 9 C 0.117 3.883 10 C -0.223 4.223 11 C 0.016 3.984 12 N -0.370 5.370 13 C -0.363 4.363 14 H 0.086 0.914 15 C -0.210 4.210 16 N -0.586 5.586 17 Si 0.737 3.263 18 H -0.214 1.214 19 H -0.218 1.218 20 H -0.213 1.213 21 C -0.170 4.170 22 C -0.208 4.208 23 C -0.221 4.221 24 C -0.180 4.180 25 C 0.132 3.868 26 O -0.289 6.289 27 N -0.209 5.209 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.169 0.831 34 H 0.234 0.766 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.043 0.957 39 H 0.063 0.937 40 H 0.215 0.785 41 H 0.063 0.937 42 H 0.141 0.859 43 H 0.118 0.882 44 H 0.112 0.888 45 H 0.111 0.889 46 H 0.110 0.890 47 H 0.163 0.837 48 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -17.449 -1.737 3.568 17.895 hybrid contribution 1.764 0.477 -0.805 1.997 sum -15.685 -1.260 2.763 15.976 Atomic orbital electron populations 1.21678 0.94024 1.01740 1.02697 1.20531 0.97050 0.89840 1.03669 1.20954 0.92885 0.95639 0.89435 1.22124 0.97148 0.95590 0.99671 1.20407 0.96692 0.94465 0.95356 1.17894 0.80511 0.82187 0.84448 1.90714 1.57169 1.54724 1.37130 1.45829 1.51183 1.11931 1.25936 1.20091 0.91024 0.91172 0.86042 1.22294 0.99829 1.04068 0.96150 1.21068 0.89103 0.98074 0.90149 1.42219 1.21339 1.60731 1.12729 1.19195 0.95138 1.23449 0.98509 0.91373 1.24665 0.98934 1.00868 0.96549 1.69632 1.39307 1.43622 1.06073 0.86288 0.84137 0.79041 0.76882 1.21387 1.21772 1.21330 1.22569 1.01079 0.90422 1.02934 1.23060 1.02458 1.01679 0.93595 1.22966 0.94403 1.02064 1.02618 1.22299 0.97751 1.01747 0.96165 1.18901 0.91041 0.86514 0.90296 1.84766 1.55271 1.61362 1.27468 1.66728 1.24744 1.03608 1.25798 0.91582 0.92237 0.92872 0.89641 0.89775 0.83127 0.76648 0.90136 0.91314 0.92859 0.95689 0.93730 0.78489 0.93670 0.85881 0.88225 0.88805 0.88853 0.89013 0.83741 0.73921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.77 37.16 0.36 -0.89 16 2 C -0.07 -0.69 6.33 -27.88 -0.18 -0.87 16 3 C 0.15 1.86 6.18 -82.65 -0.51 1.35 16 4 C -0.12 -1.69 9.27 -39.03 -0.36 -2.05 16 5 C -0.06 -0.85 5.91 -104.68 -0.62 -1.47 16 6 C 0.56 9.44 7.21 -12.18 -0.09 9.35 16 7 O -0.52 -10.04 12.68 5.36 0.07 -9.97 16 8 N -0.70 -10.80 4.68 -48.44 -0.23 -11.03 16 9 C 0.20 3.25 0.54 -131.82 -0.07 3.18 16 10 C -0.17 -2.34 6.98 37.16 0.26 -2.08 16 11 C 0.14 3.02 5.03 -4.05 -0.02 3.00 16 12 N -0.73 -18.08 5.04 -59.91 -0.30 -18.38 16 13 C -0.23 -6.53 9.99 -15.06 -0.15 -6.68 16 14 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 15 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 16 N -0.94 -27.80 13.06 55.49 0.72 -27.07 16 17 Si 0.91 22.65 29.55 -169.99 -5.02 17.63 16 18 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 19 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 C -0.15 -2.23 4.84 -90.62 -0.44 -2.67 16 22 C -0.17 -2.07 9.64 -26.69 -0.26 -2.33 16 23 C -0.18 -2.12 9.82 -26.69 -0.26 -2.39 16 24 C -0.16 -2.06 9.55 -38.84 -0.37 -2.43 16 25 C 0.31 4.08 7.74 -17.17 -0.13 3.94 16 26 O -0.48 -5.38 13.56 -18.77 -0.25 -5.64 16 27 N -0.49 -6.62 9.86 -9.60 -0.09 -6.71 16 28 H 0.07 0.65 7.94 -51.93 -0.41 0.24 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 0.66 7.86 -51.93 -0.41 0.25 16 33 H 0.15 1.93 7.62 -52.49 -0.40 1.53 16 34 H 0.40 5.48 6.63 -40.82 -0.27 5.21 16 35 H 0.08 1.28 6.03 -51.93 -0.31 0.97 16 36 H 0.07 0.89 6.78 -51.93 -0.35 0.54 16 37 H 0.05 0.66 6.98 -51.93 -0.36 0.30 16 38 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.04 1.04 6.32 -51.93 -0.33 0.71 16 40 H 0.38 9.70 6.62 -40.82 -0.27 9.43 16 41 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.12 2.18 7.08 -51.93 -0.37 1.82 16 43 H 0.10 1.12 5.88 -51.93 -0.31 0.81 16 44 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.09 1.00 7.34 -51.93 -0.38 0.62 16 47 H 0.14 1.62 6.54 -52.48 -0.34 1.27 16 48 H 0.40 2.71 9.06 45.56 0.41 3.12 16 LS Contribution 387.72 15.07 5.84 5.84 Total: -1.00 -33.78 387.72 -8.38 -42.16 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: -6.18 Total: 16.72 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: -2.93 Total: -3.54 kcal Atomic # 7 Polarization: -63.30 SS G_CDS: 0.10 Total: -63.20 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -0.19 Total: -15.61 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.78 -8.38 -42.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267856430.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.148 kcal (2) G-P(sol) polarization free energy of solvation -33.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds