Wall clock time and date at job start Tue Mar 31 2020 18:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.46653 * 2 1 4 4 C 1.38027 * 119.50760 * 125.00320 * 3 2 1 5 5 C 1.39922 * 119.13186 * 179.72380 * 4 3 2 6 6 C 1.48162 * 120.89452 * 180.27181 * 5 4 3 7 7 O 1.21507 * 119.99634 * 0.02562 * 6 5 4 8 8 N 1.34778 * 120.00093 * 179.97438 * 6 5 4 9 9 C 1.46502 * 119.99796 * 174.96847 * 8 6 5 10 10 C 1.53003 * 109.47116 * 304.32005 * 9 8 6 11 11 C 1.52995 * 109.46951 * 64.32331 * 9 8 6 12 12 N 1.46497 * 109.47374 * 59.99990 * 11 9 8 13 13 C 1.36936 * 120.00078 * 180.02562 * 12 11 9 14 14 H 1.08000 * 119.99669 * 359.97438 * 13 12 11 15 15 C 1.38810 * 119.99993 * 180.02562 * 13 12 11 16 16 N 1.31614 * 119.99913 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00205 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46959 * 59.99214 * 17 15 13 19 19 H 1.48495 * 109.47215 * 179.97438 * 17 15 13 20 20 H 1.48507 * 109.47012 * 300.00016 * 17 15 13 21 21 C 1.52997 * 109.46844 * 184.32402 * 9 8 6 22 22 C 1.53008 * 117.49907 * 132.83773 * 21 9 8 23 23 C 1.53001 * 117.50223 * 64.17783 * 21 9 8 24 24 C 1.39618 * 118.21479 * 0.25291 * 5 4 3 25 25 C 1.38848 * 118.94784 * 359.97438 * 24 5 4 26 26 O 1.35687 * 119.62108 * 180.02562 * 25 24 5 27 27 N 1.31871 * 119.51651 * 305.24646 * 3 2 1 28 28 H 1.08997 * 109.47355 * 59.99730 * 1 2 3 29 29 H 1.09002 * 109.46748 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47050 * 299.99645 * 1 2 3 31 31 H 1.08999 * 109.47230 * 240.00835 * 2 1 3 32 32 H 1.08997 * 109.47355 * 120.00270 * 2 1 3 33 33 H 1.07995 * 120.43431 * 0.02562 * 4 3 2 34 34 H 0.96999 * 119.99651 * 354.97724 * 8 6 5 35 35 H 1.08999 * 109.46918 * 60.00386 * 10 9 8 36 36 H 1.09001 * 109.47222 * 179.97438 * 10 9 8 37 37 H 1.08998 * 109.47153 * 300.00300 * 10 9 8 38 38 H 1.09001 * 109.46911 * 180.02562 * 11 9 8 39 39 H 1.09001 * 109.46906 * 299.99164 * 11 9 8 40 40 H 0.96997 * 119.99779 * 359.97438 * 12 11 9 41 41 H 0.97007 * 120.00048 * 180.02562 * 16 15 13 42 42 H 1.09001 * 115.55167 * 278.50717 * 21 9 8 43 43 H 1.08998 * 117.49855 * 359.97438 * 22 21 9 44 44 H 1.08999 * 117.49892 * 145.01805 * 22 21 9 45 45 H 1.08998 * 117.49648 * 214.97898 * 23 21 9 46 46 H 1.08999 * 117.50008 * 359.97438 * 23 21 9 47 47 H 1.08003 * 120.52155 * 180.02562 * 24 5 4 48 48 H 0.96703 * 114.00289 * 89.99892 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.9085 1.8322 0.9840 5 6 3.3743 3.1516 0.9731 6 6 4.3204 3.6329 2.0068 7 8 4.7023 2.8783 2.8792 8 7 4.7580 4.9073 1.9788 9 6 5.6051 5.4148 3.0610 10 6 4.8957 5.2126 4.4015 11 6 6.9336 4.6559 3.0674 12 7 7.6127 4.8496 1.7839 13 6 8.8277 4.2603 1.5564 14 1 9.2854 3.6532 2.3234 15 6 9.4715 4.4443 0.3404 16 7 8.9139 5.1846 -0.5940 17 14 11.1292 3.6410 0.0303 18 1 10.9942 2.1667 0.1455 19 1 11.6006 3.9895 -1.3340 20 1 12.1105 4.1279 1.0331 21 6 5.8705 6.9059 2.8444 22 6 5.6906 7.8372 4.0449 23 6 4.6704 7.8531 2.9039 24 6 2.9241 4.0022 -0.0383 25 6 2.0385 3.5086 -0.9870 26 8 1.5926 4.3233 -1.9762 27 7 1.6244 2.2541 -0.9372 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.2340 1.1434 1.7494 34 1 4.5120 5.4885 1.2422 35 1 4.7066 4.1502 4.5559 36 1 5.5262 5.5897 5.2068 37 1 3.9493 5.7532 4.3969 38 1 7.5636 5.0332 3.8728 39 1 6.7444 3.5936 3.2218 40 1 7.2015 5.3946 1.0949 41 1 9.3636 5.3129 -1.4439 42 1 6.6650 7.1441 2.1372 43 1 5.3829 7.3877 4.9890 44 1 6.3666 8.6883 4.1274 45 1 4.6756 8.7145 2.2361 46 1 3.6917 7.4139 3.0970 47 1 3.2601 5.0277 -0.0825 48 1 2.1436 4.3151 -2.7709 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267856430.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:36 Heat of formation + Delta-G solvation = -26.471703 kcal Electronic energy + Delta-G solvation = -29404.905640 eV Core-core repulsion = 25460.448579 eV Total energy + Delta-G solvation = -3944.457060 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.05451 -41.07375 -39.08874 -38.22993 -36.38909 -35.34951 -34.83205 -33.49483 -32.80751 -31.17088 -30.34775 -27.62603 -26.38592 -25.34153 -24.54196 -24.03431 -23.31820 -23.09581 -21.20346 -20.29940 -19.76579 -19.25742 -18.39320 -17.87962 -17.09114 -16.89280 -16.63793 -16.52467 -16.24335 -16.06021 -15.58234 -15.43329 -15.14431 -15.00693 -14.95294 -14.26376 -14.18818 -13.79293 -13.70497 -13.38293 -13.22024 -13.09376 -12.98556 -12.79665 -12.78349 -12.50235 -12.35601 -12.26368 -12.11098 -12.03931 -11.95256 -11.77140 -11.31982 -11.12326 -11.02155 -10.97613 -10.86841 -10.46072 -10.04479 -9.91282 -8.95571 -7.95996 -5.21966 -0.44076 -0.13676 1.44044 1.46358 1.52383 1.74926 1.94341 2.42874 2.54441 2.70082 2.98609 3.34342 3.37378 3.47720 3.62277 3.85866 3.86435 3.88111 3.93232 4.14925 4.15866 4.22381 4.24653 4.38983 4.43555 4.44805 4.58846 4.70191 4.77541 4.78799 4.85527 4.87221 4.93168 4.97294 5.02290 5.06218 5.11716 5.18653 5.26821 5.31317 5.32059 5.43104 5.46399 5.47277 5.59068 6.26370 6.48935 6.53640 6.79098 7.13345 7.34132 8.08455 8.36714 9.26641 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.008917 B = 0.003955 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3139.400007 B = 7078.150697 C = 8517.308057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.074 4.074 3 C 0.149 3.851 4 C -0.134 4.134 5 C -0.075 4.075 6 C 0.559 3.441 7 O -0.553 6.553 8 N -0.692 5.692 9 C 0.210 3.790 10 C -0.156 4.156 11 C 0.146 3.854 12 N -0.729 5.729 13 C -0.246 4.246 14 H 0.064 0.936 15 C -0.067 4.067 16 N -0.962 5.962 17 Si 0.966 3.034 18 H -0.285 1.285 19 H -0.291 1.291 20 H -0.279 1.279 21 C -0.176 4.176 22 C -0.161 4.161 23 C -0.157 4.157 24 C -0.158 4.158 25 C 0.310 3.690 26 O -0.484 6.484 27 N -0.500 5.500 28 H 0.052 0.948 29 H 0.080 0.920 30 H 0.048 0.952 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.152 0.848 34 H 0.406 0.594 35 H 0.060 0.940 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.022 0.978 39 H 0.019 0.981 40 H 0.377 0.623 41 H 0.251 0.749 42 H 0.089 0.911 43 H 0.113 0.887 44 H 0.100 0.900 45 H 0.105 0.895 46 H 0.106 0.894 47 H 0.160 0.840 48 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.988 -0.612 3.319 18.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.112 4.112 3 C 0.012 3.988 4 C -0.155 4.155 5 C -0.085 4.085 6 C 0.346 3.654 7 O -0.432 6.432 8 N -0.343 5.343 9 C 0.125 3.875 10 C -0.214 4.214 11 C 0.018 3.982 12 N -0.372 5.372 13 C -0.378 4.378 14 H 0.082 0.918 15 C -0.259 4.259 16 N -0.613 5.613 17 Si 0.796 3.204 18 H -0.211 1.211 19 H -0.217 1.217 20 H -0.205 1.205 21 C -0.195 4.195 22 C -0.198 4.198 23 C -0.194 4.194 24 C -0.179 4.179 25 C 0.131 3.869 26 O -0.294 6.294 27 N -0.221 5.221 28 H 0.071 0.929 29 H 0.099 0.901 30 H 0.067 0.933 31 H 0.112 0.888 32 H 0.118 0.882 33 H 0.170 0.830 34 H 0.243 0.757 35 H 0.079 0.921 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.039 0.961 39 H 0.037 0.963 40 H 0.210 0.790 41 H 0.060 0.940 42 H 0.107 0.893 43 H 0.131 0.869 44 H 0.118 0.882 45 H 0.123 0.877 46 H 0.124 0.876 47 H 0.178 0.822 48 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -18.574 -1.301 3.732 18.990 hybrid contribution 2.098 0.345 -0.866 2.296 sum -16.476 -0.956 2.866 16.751 Atomic orbital electron populations 1.21641 0.93303 1.02877 1.01815 1.20674 0.97583 0.88053 1.04852 1.21405 0.92086 0.96820 0.88530 1.22256 0.97607 0.95378 1.00244 1.20351 0.97155 0.95377 0.95651 1.18267 0.80495 0.82187 0.84460 1.90693 1.58491 1.55523 1.38525 1.45824 1.50520 1.11827 1.26111 1.19923 0.88745 0.91466 0.87399 1.22220 1.00902 1.03220 0.95092 1.21103 0.91550 0.97348 0.88191 1.42277 1.20729 1.60224 1.13981 1.19513 0.96392 1.23295 0.98580 0.91822 1.25388 1.02265 1.01830 0.96449 1.69766 1.40521 1.44788 1.06209 0.85321 0.80367 0.78064 0.76672 1.21120 1.21700 1.20484 1.22255 1.02586 0.89953 1.04724 1.23195 1.02400 1.00647 0.93533 1.23047 0.93798 1.00738 1.01835 1.22404 0.97663 1.02256 0.95620 1.19032 0.90640 0.86581 0.90638 1.84723 1.55782 1.60890 1.28035 1.66837 1.25095 1.03967 1.26172 0.92876 0.90107 0.93279 0.88849 0.88154 0.82989 0.75691 0.92098 0.90036 0.90467 0.96054 0.96264 0.78991 0.94027 0.89327 0.86867 0.88178 0.87688 0.87580 0.82243 0.71694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.77 71.98 0.70 -1.50 16 2 C -0.07 -1.30 6.33 29.85 0.19 -1.11 16 3 C 0.15 3.64 6.18 42.50 0.26 3.90 16 4 C -0.13 -3.65 9.27 22.63 0.21 -3.44 16 5 C -0.07 -2.19 5.91 -19.90 -0.12 -2.31 16 6 C 0.56 19.03 7.21 86.88 0.63 19.66 16 7 O -0.55 -22.03 12.68 -3.74 -0.05 -22.08 16 8 N -0.69 -21.45 4.68 -425.47 -1.99 -23.44 16 9 C 0.21 6.74 0.54 3.60 0.00 6.74 16 10 C -0.16 -4.25 6.98 71.98 0.50 -3.75 16 11 C 0.15 6.27 5.03 86.38 0.43 6.71 16 12 N -0.73 -37.34 5.04 -343.47 -1.73 -39.07 16 13 C -0.25 -14.15 9.99 84.03 0.84 -13.31 16 14 H 0.06 3.64 7.83 -2.91 -0.02 3.62 16 15 C -0.07 -3.85 5.50 84.86 0.47 -3.39 16 16 N -0.96 -57.78 13.06 21.65 0.28 -57.50 16 17 Si 0.97 46.89 29.55 68.60 2.03 48.91 16 18 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 19 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 20 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 21 C -0.18 -5.05 4.84 -10.79 -0.05 -5.11 16 22 C -0.16 -3.52 9.64 30.62 0.30 -3.22 16 23 C -0.16 -3.23 9.82 30.62 0.30 -2.93 16 24 C -0.16 -4.02 9.55 22.75 0.22 -3.80 16 25 C 0.31 7.82 7.74 84.78 0.66 8.48 16 26 O -0.48 -10.12 13.56 -90.06 -1.22 -11.34 16 27 N -0.50 -13.13 9.86 -297.16 -2.93 -16.06 16 28 H 0.05 0.98 7.94 -2.39 -0.02 0.96 16 29 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.10 1.42 7.86 -2.39 -0.02 1.41 16 33 H 0.15 3.98 7.62 -2.91 -0.02 3.96 16 34 H 0.41 11.05 6.63 -92.71 -0.61 10.43 16 35 H 0.06 1.93 6.03 -2.39 -0.01 1.92 16 36 H 0.08 1.98 6.78 -2.39 -0.02 1.96 16 37 H 0.08 1.73 6.98 -2.39 -0.02 1.71 16 38 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.02 0.94 6.32 -2.39 -0.02 0.92 16 40 H 0.38 19.76 6.62 -92.71 -0.61 19.15 16 41 H 0.25 14.66 8.31 -92.70 -0.77 13.88 16 42 H 0.09 3.21 7.08 -2.39 -0.02 3.19 16 43 H 0.11 2.18 5.88 -2.39 -0.01 2.17 16 44 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 45 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 46 H 0.11 1.92 7.34 -2.39 -0.02 1.90 16 47 H 0.16 3.41 6.54 -2.91 -0.02 3.39 16 48 H 0.42 5.02 9.06 -74.06 -0.67 4.35 16 Total: -1.00 -73.48 387.72 -0.95 -74.44 By element: Atomic # 1 Polarization: 45.37 SS G_CDS: -0.88 Total: 44.50 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: 5.53 Total: 1.64 kcal Atomic # 7 Polarization: -129.70 SS G_CDS: -6.37 Total: -136.07 kcal Atomic # 8 Polarization: -32.15 SS G_CDS: -1.27 Total: -33.42 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.91 kcal Total: -73.48 -0.95 -74.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267856430.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.967 kcal (2) G-P(sol) polarization free energy of solvation -73.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds