Wall clock time and date at job start Tue Mar 31 2020 18:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.46850 * 2 1 4 4 C 1.38023 * 119.51538 * 124.99994 * 3 2 1 5 5 C 1.39921 * 119.13669 * 179.97438 * 4 3 2 6 6 C 1.48168 * 120.89619 * 180.02562 * 5 4 3 7 7 O 1.21517 * 119.99712 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00118 * 179.97438 * 6 5 4 9 9 C 1.46505 * 119.99506 * 175.83380 * 8 6 5 10 10 C 1.52997 * 109.46760 * 175.44466 * 9 8 6 11 11 C 1.53000 * 109.47165 * 55.44543 * 9 8 6 12 12 N 1.46497 * 109.47113 * 59.99594 * 11 9 8 13 13 C 1.36931 * 119.99967 * 179.97438 * 12 11 9 14 14 H 1.08002 * 119.99959 * 0.02562 * 13 12 11 15 15 C 1.38816 * 120.00147 * 180.02562 * 13 12 11 16 16 N 1.31614 * 119.99950 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00124 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47198 * 59.99329 * 17 15 13 19 19 H 1.48501 * 109.47067 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.46974 * 299.99652 * 17 15 13 21 21 C 1.52998 * 109.47208 * 295.44112 * 9 8 6 22 22 C 1.52999 * 117.49748 * 1.79127 * 21 9 8 23 23 C 1.52996 * 117.50315 * 293.12990 * 21 9 8 24 24 C 1.39613 * 118.21622 * 359.97438 * 5 4 3 25 25 C 1.38854 * 118.94952 * 0.27873 * 24 5 4 26 26 O 1.35681 * 119.62285 * 179.70049 * 25 24 5 27 27 N 1.31881 * 119.51599 * 305.02031 * 3 2 1 28 28 H 1.09000 * 109.47148 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47375 * 300.00304 * 1 2 3 30 30 H 1.09006 * 109.47085 * 60.00370 * 1 2 3 31 31 H 1.08997 * 109.47617 * 240.00115 * 2 1 3 32 32 H 1.09001 * 109.47518 * 119.99561 * 2 1 3 33 33 H 1.08004 * 120.43209 * 359.97438 * 4 3 2 34 34 H 0.96993 * 120.00378 * 355.84175 * 8 6 5 35 35 H 1.09002 * 109.47197 * 59.99990 * 10 9 8 36 36 H 1.09002 * 109.47599 * 179.97438 * 10 9 8 37 37 H 1.08999 * 109.47333 * 300.00087 * 10 9 8 38 38 H 1.09002 * 109.46599 * 179.97438 * 11 9 8 39 39 H 1.08993 * 109.46964 * 299.99486 * 11 9 8 40 40 H 0.97007 * 120.00293 * 0.02562 * 12 11 9 41 41 H 0.96999 * 120.00014 * 179.97438 * 16 15 13 42 42 H 1.09000 * 115.54624 * 147.45702 * 21 9 8 43 43 H 1.09000 * 117.50326 * 359.97438 * 22 21 9 44 44 H 1.09004 * 117.49804 * 145.01904 * 22 21 9 45 45 H 1.08994 * 117.50455 * 214.98082 * 23 21 9 46 46 H 1.09004 * 117.50047 * 359.97438 * 23 21 9 47 47 H 1.07999 * 120.52379 * 180.02562 * 24 5 4 48 48 H 0.96694 * 114.00389 * 89.99939 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9084 1.8323 0.9839 5 6 3.3702 3.1531 0.9760 6 6 4.3118 3.6361 2.0130 7 8 4.6931 2.8818 2.8862 8 7 4.7455 4.9119 1.9879 9 6 5.6036 5.4151 3.0634 10 6 6.0431 6.8441 2.7387 11 6 6.8370 4.5192 3.1933 12 7 7.5808 4.5264 1.9312 13 6 8.7299 3.7916 1.8095 14 1 9.0875 3.2064 2.6438 15 6 9.4350 3.7989 0.6138 16 7 8.9989 4.5116 -0.4031 17 14 11.0022 2.7959 0.4475 18 1 10.6978 1.3604 0.6759 19 1 11.5601 2.9721 -0.9173 20 1 11.9940 3.2574 1.4517 21 6 4.8267 5.4076 4.3815 22 6 3.3952 4.8681 4.3546 23 6 3.6446 6.3703 4.5103 24 6 2.9207 4.0035 -0.0359 25 6 2.0348 3.5100 -0.9844 26 8 1.5844 4.3262 -1.9703 27 7 1.6279 2.2529 -0.9399 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.2334 1.1438 1.7499 34 1 4.4895 5.4969 1.2578 35 1 5.1644 7.4824 2.6462 36 1 6.6812 7.2189 3.5391 37 1 6.5966 6.8496 1.7997 38 1 7.4756 4.8939 3.9932 39 1 6.5238 3.5012 3.4246 40 1 7.2598 5.0523 1.1820 41 1 9.4918 4.5170 -1.2385 42 1 5.4199 5.2165 5.2757 43 1 3.0067 4.5189 3.3979 44 1 3.0465 4.3224 5.2314 45 1 3.4598 6.8123 5.4893 46 1 3.4205 7.0094 3.6562 47 1 3.2535 5.0301 -0.0779 48 1 2.1338 4.3222 -2.7659 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267856436.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:41 Heat of formation + Delta-G solvation = 6.464745 kcal Electronic energy + Delta-G solvation = -29737.669166 eV Core-core repulsion = 25794.640337 eV Total energy + Delta-G solvation = -3943.028829 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.02681 -40.01780 -37.58873 -37.05325 -34.99635 -34.21900 -33.34072 -32.34829 -31.21257 -29.70667 -29.31016 -26.10240 -25.20788 -24.02164 -23.57068 -22.49113 -22.14573 -21.37292 -20.45216 -19.13334 -18.81488 -17.32845 -17.16306 -16.85036 -15.86317 -15.73478 -15.58856 -15.35994 -14.78278 -14.42519 -14.33398 -14.18411 -13.82184 -13.72878 -13.32416 -13.21392 -12.89139 -12.40671 -12.22801 -12.14374 -12.09625 -11.94088 -11.90648 -11.57925 -11.38012 -11.20330 -11.12634 -10.88480 -10.81909 -10.76489 -10.26337 -10.13405 -10.00925 -9.87563 -9.73420 -9.65393 -9.32543 -8.92960 -8.76089 -8.67261 -6.82889 -5.73731 -2.99426 0.67480 0.86163 2.95590 3.20071 3.43148 3.46318 3.50066 3.51579 3.77738 3.96673 4.30089 4.57128 4.60441 4.81209 4.84009 4.88673 5.01756 5.06142 5.09942 5.12123 5.15532 5.35673 5.39376 5.49503 5.56531 5.62607 5.65344 5.69630 5.73039 5.73556 5.88918 5.93579 5.99546 6.02301 6.10247 6.12207 6.23161 6.24603 6.32654 6.33657 6.55541 6.60467 6.87976 7.13723 7.31708 7.74054 7.75598 7.77464 8.45760 8.46857 9.57414 10.15438 10.50960 11.49583 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.008896 B = 0.004234 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3146.591166 B = 6611.858950 C = 8182.913088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.073 4.073 3 C 0.149 3.851 4 C -0.124 4.124 5 C -0.059 4.059 6 C 0.566 3.434 7 O -0.507 6.507 8 N -0.706 5.706 9 C 0.200 3.800 10 C -0.148 4.148 11 C 0.139 3.861 12 N -0.726 5.726 13 C -0.229 4.229 14 H 0.068 0.932 15 C -0.016 4.016 16 N -0.938 5.938 17 Si 0.905 3.095 18 H -0.287 1.287 19 H -0.292 1.292 20 H -0.287 1.287 21 C -0.143 4.143 22 C -0.165 4.165 23 C -0.182 4.182 24 C -0.160 4.160 25 C 0.311 3.689 26 O -0.482 6.482 27 N -0.489 5.489 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.151 0.849 34 H 0.395 0.605 35 H 0.053 0.947 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.022 0.978 39 H 0.057 0.943 40 H 0.381 0.619 41 H 0.253 0.747 42 H 0.110 0.890 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.091 0.909 47 H 0.144 0.856 48 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.441 0.220 2.566 17.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 C 0.012 3.988 4 C -0.144 4.144 5 C -0.070 4.070 6 C 0.352 3.648 7 O -0.383 6.383 8 N -0.358 5.358 9 C 0.114 3.886 10 C -0.206 4.206 11 C 0.011 3.989 12 N -0.370 5.370 13 C -0.360 4.360 14 H 0.086 0.914 15 C -0.211 4.211 16 N -0.587 5.587 17 Si 0.736 3.264 18 H -0.214 1.214 19 H -0.218 1.218 20 H -0.213 1.213 21 C -0.163 4.163 22 C -0.202 4.202 23 C -0.219 4.219 24 C -0.181 4.181 25 C 0.132 3.868 26 O -0.289 6.289 27 N -0.209 5.209 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.169 0.831 34 H 0.230 0.770 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.040 0.960 39 H 0.075 0.925 40 H 0.215 0.785 41 H 0.063 0.937 42 H 0.128 0.872 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.108 0.892 46 H 0.109 0.891 47 H 0.161 0.839 48 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -18.016 -0.516 2.992 18.270 hybrid contribution 1.692 0.274 -0.653 1.834 sum -16.324 -0.242 2.339 16.492 Atomic orbital electron populations 1.21677 0.94022 1.01745 1.02678 1.20532 0.97035 0.89850 1.03701 1.20953 0.92867 0.95664 0.89352 1.22133 0.97028 0.95585 0.99702 1.20466 0.96712 0.94472 0.95371 1.17750 0.80464 0.82246 0.84328 1.90752 1.55999 1.54781 1.36737 1.45887 1.51414 1.11888 1.26597 1.20131 0.89679 0.94722 0.84036 1.21997 1.01150 0.93571 1.03881 1.21182 0.89057 0.98376 0.90301 1.42229 1.27179 1.57127 1.10484 1.19189 0.99314 1.20292 0.97242 0.91400 1.24661 0.99419 1.00829 0.96192 1.69629 1.40831 1.45035 1.03243 0.86289 0.83494 0.79985 0.76594 1.21407 1.21792 1.21347 1.22571 0.90583 1.04209 0.98945 1.22931 0.98977 0.95610 1.02664 1.22977 1.03559 0.92952 1.02418 1.22278 0.97856 1.01691 0.96308 1.18901 0.91097 0.86489 0.90320 1.84768 1.55151 1.61369 1.27585 1.66732 1.24814 1.03576 1.25768 0.92231 0.92869 0.91600 0.89635 0.89756 0.83104 0.76996 0.92825 0.90802 0.90659 0.96036 0.92532 0.78530 0.93707 0.87158 0.89271 0.89345 0.89211 0.89095 0.83876 0.73988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.77 37.16 0.36 -0.91 16 2 C -0.07 -0.71 6.33 -27.88 -0.18 -0.89 16 3 C 0.15 1.90 6.18 -82.65 -0.51 1.39 16 4 C -0.12 -1.71 9.27 -39.03 -0.36 -2.08 16 5 C -0.06 -0.87 5.91 -104.68 -0.62 -1.49 16 6 C 0.57 9.46 4.80 -12.18 -0.06 9.41 16 7 O -0.51 -9.93 12.71 5.35 0.07 -9.86 16 8 N -0.71 -10.70 4.16 -48.44 -0.20 -10.90 16 9 C 0.20 3.17 0.55 -131.82 -0.07 3.10 16 10 C -0.15 -2.12 8.17 37.16 0.30 -1.82 16 11 C 0.14 2.89 4.84 -4.04 -0.02 2.87 16 12 N -0.73 -18.15 5.17 -59.91 -0.31 -18.46 16 13 C -0.23 -6.49 9.99 -15.06 -0.15 -6.64 16 14 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 15 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 16 N -0.94 -28.01 13.06 55.49 0.72 -27.29 16 17 Si 0.90 22.77 29.55 -169.99 -5.02 17.75 16 18 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 19 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 C -0.14 -2.01 4.86 -90.62 -0.44 -2.45 16 22 C -0.16 -2.20 8.52 -26.69 -0.23 -2.42 16 23 C -0.18 -2.09 9.68 -26.70 -0.26 -2.35 16 24 C -0.16 -2.07 9.55 -38.84 -0.37 -2.44 16 25 C 0.31 4.06 7.74 -17.16 -0.13 3.93 16 26 O -0.48 -5.33 13.56 -18.75 -0.25 -5.59 16 27 N -0.49 -6.67 9.87 -9.60 -0.09 -6.77 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.66 7.94 -51.93 -0.41 0.24 16 31 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 0.69 7.86 -51.93 -0.41 0.28 16 33 H 0.15 2.01 7.62 -52.48 -0.40 1.61 16 34 H 0.40 5.14 6.63 -40.82 -0.27 4.87 16 35 H 0.05 0.62 6.89 -51.93 -0.36 0.26 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.07 1.25 6.86 -51.93 -0.36 0.89 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.06 1.32 5.72 -51.93 -0.30 1.02 16 40 H 0.38 9.74 6.35 -40.82 -0.26 9.48 16 41 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.11 1.55 8.06 -51.93 -0.42 1.13 16 43 H 0.09 1.27 5.16 -51.93 -0.27 1.00 16 44 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.09 0.99 7.17 -51.93 -0.37 0.61 16 47 H 0.14 1.55 6.54 -52.49 -0.34 1.21 16 48 H 0.40 2.65 9.06 45.56 0.41 3.07 16 LS Contribution 386.08 15.07 5.82 5.82 Total: -1.00 -34.24 386.08 -8.36 -42.60 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: -6.26 Total: 16.04 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -2.83 Total: -3.34 kcal Atomic # 7 Polarization: -63.53 SS G_CDS: 0.12 Total: -63.41 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -0.19 Total: -15.45 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.24 -8.36 -42.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267856436.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.065 kcal (2) G-P(sol) polarization free energy of solvation -34.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds