Wall clock time and date at job start Tue Mar 31 2020 18:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.46850 * 2 1 4 4 C 1.38023 * 119.51538 * 124.99994 * 3 2 1 5 5 C 1.39921 * 119.13669 * 179.97438 * 4 3 2 6 6 C 1.48168 * 120.89619 * 180.02562 * 5 4 3 7 7 O 1.21517 * 119.99712 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00118 * 179.97438 * 6 5 4 9 9 C 1.46505 * 119.99506 * 175.83380 * 8 6 5 10 10 C 1.52997 * 109.46760 * 175.44466 * 9 8 6 11 11 C 1.53000 * 109.47165 * 55.44543 * 9 8 6 12 12 N 1.46497 * 109.47113 * 59.99594 * 11 9 8 13 13 C 1.36931 * 119.99967 * 179.97438 * 12 11 9 14 14 H 1.08002 * 119.99959 * 0.02562 * 13 12 11 15 15 C 1.38816 * 120.00147 * 180.02562 * 13 12 11 16 16 N 1.31614 * 119.99950 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00124 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47198 * 59.99329 * 17 15 13 19 19 H 1.48501 * 109.47067 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.46974 * 299.99652 * 17 15 13 21 21 C 1.52998 * 109.47208 * 295.44112 * 9 8 6 22 22 C 1.52999 * 117.49748 * 1.79127 * 21 9 8 23 23 C 1.52996 * 117.50315 * 293.12990 * 21 9 8 24 24 C 1.39613 * 118.21622 * 359.97438 * 5 4 3 25 25 C 1.38854 * 118.94952 * 0.27873 * 24 5 4 26 26 O 1.35681 * 119.62285 * 179.70049 * 25 24 5 27 27 N 1.31881 * 119.51599 * 305.02031 * 3 2 1 28 28 H 1.09000 * 109.47148 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47375 * 300.00304 * 1 2 3 30 30 H 1.09006 * 109.47085 * 60.00370 * 1 2 3 31 31 H 1.08997 * 109.47617 * 240.00115 * 2 1 3 32 32 H 1.09001 * 109.47518 * 119.99561 * 2 1 3 33 33 H 1.08004 * 120.43209 * 359.97438 * 4 3 2 34 34 H 0.96993 * 120.00378 * 355.84175 * 8 6 5 35 35 H 1.09002 * 109.47197 * 59.99990 * 10 9 8 36 36 H 1.09002 * 109.47599 * 179.97438 * 10 9 8 37 37 H 1.08999 * 109.47333 * 300.00087 * 10 9 8 38 38 H 1.09002 * 109.46599 * 179.97438 * 11 9 8 39 39 H 1.08993 * 109.46964 * 299.99486 * 11 9 8 40 40 H 0.97007 * 120.00293 * 0.02562 * 12 11 9 41 41 H 0.96999 * 120.00014 * 179.97438 * 16 15 13 42 42 H 1.09000 * 115.54624 * 147.45702 * 21 9 8 43 43 H 1.09000 * 117.50326 * 359.97438 * 22 21 9 44 44 H 1.09004 * 117.49804 * 145.01904 * 22 21 9 45 45 H 1.08994 * 117.50455 * 214.98082 * 23 21 9 46 46 H 1.09004 * 117.50047 * 359.97438 * 23 21 9 47 47 H 1.07999 * 120.52379 * 180.02562 * 24 5 4 48 48 H 0.96694 * 114.00389 * 89.99939 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9084 1.8323 0.9839 5 6 3.3702 3.1531 0.9760 6 6 4.3118 3.6361 2.0130 7 8 4.6931 2.8818 2.8862 8 7 4.7455 4.9119 1.9879 9 6 5.6036 5.4151 3.0634 10 6 6.0431 6.8441 2.7387 11 6 6.8370 4.5192 3.1933 12 7 7.5808 4.5264 1.9312 13 6 8.7299 3.7916 1.8095 14 1 9.0875 3.2064 2.6438 15 6 9.4350 3.7989 0.6138 16 7 8.9989 4.5116 -0.4031 17 14 11.0022 2.7959 0.4475 18 1 10.6978 1.3604 0.6759 19 1 11.5601 2.9721 -0.9173 20 1 11.9940 3.2574 1.4517 21 6 4.8267 5.4076 4.3815 22 6 3.3952 4.8681 4.3546 23 6 3.6446 6.3703 4.5103 24 6 2.9207 4.0035 -0.0359 25 6 2.0348 3.5100 -0.9844 26 8 1.5844 4.3262 -1.9703 27 7 1.6279 2.2529 -0.9399 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.2334 1.1438 1.7499 34 1 4.4895 5.4969 1.2578 35 1 5.1644 7.4824 2.6462 36 1 6.6812 7.2189 3.5391 37 1 6.5966 6.8496 1.7997 38 1 7.4756 4.8939 3.9932 39 1 6.5238 3.5012 3.4246 40 1 7.2598 5.0523 1.1820 41 1 9.4918 4.5170 -1.2385 42 1 5.4199 5.2165 5.2757 43 1 3.0067 4.5189 3.3979 44 1 3.0465 4.3224 5.2314 45 1 3.4598 6.8123 5.4893 46 1 3.4205 7.0094 3.6562 47 1 3.2535 5.0301 -0.0779 48 1 2.1338 4.3222 -2.7659 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267856436.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:40 Heat of formation + Delta-G solvation = -19.412616 kcal Electronic energy + Delta-G solvation = -29738.791293 eV Core-core repulsion = 25794.640337 eV Total energy + Delta-G solvation = -3944.150955 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.16190 -41.16034 -38.67310 -38.12773 -36.60172 -35.32647 -34.74780 -33.53633 -32.79951 -31.20392 -30.34838 -27.68382 -26.31063 -25.55464 -24.80343 -23.47839 -23.13337 -22.90528 -21.54649 -20.42305 -19.82850 -19.29122 -18.27913 -17.90031 -17.14939 -16.88911 -16.79273 -16.57264 -16.24212 -15.71219 -15.55236 -15.33475 -15.06161 -14.99168 -14.85813 -14.59972 -14.20208 -13.57801 -13.53710 -13.39584 -13.27093 -13.01274 -12.97970 -12.80368 -12.78531 -12.45431 -12.36352 -12.30211 -12.16676 -12.02717 -11.95891 -11.78060 -11.39496 -11.19833 -11.02368 -10.90509 -10.76477 -10.41029 -10.01378 -9.91532 -8.91490 -7.94948 -5.20141 -0.42601 -0.13710 1.44266 1.46672 1.52610 1.79930 2.00938 2.44031 2.54885 2.70735 2.92604 3.34698 3.38731 3.50696 3.62252 3.85803 3.86171 3.96181 3.97775 4.14936 4.16288 4.23106 4.34733 4.35423 4.38406 4.44921 4.54673 4.67411 4.77815 4.78229 4.82908 4.91702 4.94325 4.95459 5.05398 5.05661 5.17762 5.19234 5.27564 5.30563 5.31937 5.35201 5.45794 5.47821 5.65261 6.28001 6.50358 6.54617 6.78880 7.20754 7.35530 8.10643 8.38540 9.27863 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.008896 B = 0.004234 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3146.591166 B = 6611.858950 C = 8182.913088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.075 4.075 3 C 0.150 3.850 4 C -0.136 4.136 5 C -0.076 4.076 6 C 0.564 3.436 7 O -0.544 6.544 8 N -0.699 5.699 9 C 0.208 3.792 10 C -0.141 4.141 11 C 0.139 3.861 12 N -0.729 5.729 13 C -0.242 4.242 14 H 0.063 0.937 15 C -0.068 4.068 16 N -0.963 5.963 17 Si 0.966 3.034 18 H -0.286 1.286 19 H -0.291 1.291 20 H -0.278 1.278 21 C -0.161 4.161 22 C -0.174 4.174 23 C -0.149 4.149 24 C -0.158 4.158 25 C 0.310 3.690 26 O -0.483 6.483 27 N -0.501 5.501 28 H 0.080 0.920 29 H 0.048 0.952 30 H 0.053 0.947 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.149 0.851 34 H 0.406 0.594 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.050 0.950 38 H 0.019 0.981 39 H 0.032 0.968 40 H 0.377 0.623 41 H 0.250 0.750 42 H 0.106 0.894 43 H 0.079 0.921 44 H 0.089 0.911 45 H 0.111 0.889 46 H 0.104 0.896 47 H 0.163 0.837 48 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.528 0.923 2.499 18.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.112 4.112 3 C 0.012 3.988 4 C -0.157 4.157 5 C -0.087 4.087 6 C 0.351 3.649 7 O -0.422 6.422 8 N -0.350 5.350 9 C 0.122 3.878 10 C -0.198 4.198 11 C 0.012 3.988 12 N -0.372 5.372 13 C -0.374 4.374 14 H 0.081 0.919 15 C -0.260 4.260 16 N -0.614 5.614 17 Si 0.795 3.205 18 H -0.212 1.212 19 H -0.217 1.217 20 H -0.204 1.204 21 C -0.180 4.180 22 C -0.211 4.211 23 C -0.186 4.186 24 C -0.180 4.180 25 C 0.131 3.869 26 O -0.294 6.294 27 N -0.221 5.221 28 H 0.099 0.901 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.111 0.889 32 H 0.117 0.883 33 H 0.167 0.833 34 H 0.243 0.757 35 H 0.107 0.893 36 H 0.095 0.905 37 H 0.069 0.931 38 H 0.037 0.963 39 H 0.049 0.951 40 H 0.210 0.790 41 H 0.059 0.941 42 H 0.124 0.876 43 H 0.097 0.903 44 H 0.108 0.892 45 H 0.129 0.871 46 H 0.123 0.877 47 H 0.180 0.820 48 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -19.114 0.214 2.922 19.337 hybrid contribution 1.992 0.037 -0.628 2.089 sum -17.122 0.250 2.293 17.276 Atomic orbital electron populations 1.21637 0.93216 1.02886 1.01834 1.20669 0.97647 0.88138 1.04768 1.21373 0.92096 0.96829 0.88488 1.22242 0.97681 0.95480 1.00290 1.20421 0.97193 0.95317 0.95737 1.18076 0.80314 0.82285 0.84222 1.90728 1.57496 1.55722 1.38283 1.45830 1.50693 1.11746 1.26777 1.19958 0.88030 0.94327 0.85516 1.21940 1.02369 0.92946 1.02573 1.21216 0.90861 0.98331 0.88387 1.42293 1.26731 1.56496 1.11728 1.19495 1.00425 1.20312 0.97208 0.91932 1.25374 1.02413 1.02235 0.96012 1.69760 1.41915 1.46293 1.03429 0.85332 0.80174 0.78476 0.76516 1.21238 1.21712 1.20449 1.22448 0.91005 1.07072 0.97521 1.22919 0.98307 0.97586 1.02278 1.23080 0.99663 0.91736 1.04102 1.22412 0.97647 1.02325 0.95595 1.19044 0.90637 0.86514 0.90684 1.84726 1.55654 1.60822 1.28155 1.66838 1.25182 1.04003 1.26089 0.90112 0.93279 0.92805 0.88887 0.88324 0.83318 0.75682 0.89316 0.90491 0.93122 0.96348 0.95054 0.79002 0.94071 0.87603 0.90304 0.89206 0.87092 0.87732 0.81990 0.71700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.77 71.98 0.70 -1.57 16 2 C -0.07 -1.37 6.33 29.85 0.19 -1.18 16 3 C 0.15 3.75 6.18 42.50 0.26 4.01 16 4 C -0.14 -3.82 9.27 22.63 0.21 -3.61 16 5 C -0.08 -2.25 5.91 -19.90 -0.12 -2.37 16 6 C 0.56 19.16 4.80 86.88 0.42 19.58 16 7 O -0.54 -22.10 12.71 -3.77 -0.05 -22.15 16 8 N -0.70 -20.97 4.16 -425.46 -1.77 -22.74 16 9 C 0.21 6.52 0.55 3.60 0.00 6.52 16 10 C -0.14 -3.83 8.17 71.98 0.59 -3.25 16 11 C 0.14 5.96 4.84 86.38 0.42 6.37 16 12 N -0.73 -37.23 5.17 -343.46 -1.78 -39.01 16 13 C -0.24 -13.97 9.99 84.04 0.84 -13.13 16 14 H 0.06 3.59 7.83 -2.91 -0.02 3.57 16 15 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 16 N -0.96 -57.97 13.06 21.65 0.28 -57.69 16 17 Si 0.97 47.07 29.55 68.60 2.03 49.10 16 18 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 19 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 20 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 21 C -0.16 -4.35 4.86 -10.80 -0.05 -4.40 16 22 C -0.17 -4.45 8.52 30.62 0.26 -4.19 16 23 C -0.15 -2.98 9.68 30.62 0.30 -2.68 16 24 C -0.16 -3.97 9.55 22.75 0.22 -3.75 16 25 C 0.31 7.78 7.74 84.78 0.66 8.43 16 26 O -0.48 -9.88 13.56 -89.99 -1.22 -11.10 16 27 N -0.50 -13.26 9.87 -297.16 -2.93 -16.19 16 28 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.05 1.01 7.94 -2.38 -0.02 1.00 16 31 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.10 1.51 7.86 -2.39 -0.02 1.49 16 33 H 0.15 4.12 7.62 -2.91 -0.02 4.10 16 34 H 0.41 10.16 6.63 -92.71 -0.61 9.55 16 35 H 0.09 1.78 6.89 -2.39 -0.02 1.76 16 36 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.05 1.64 6.86 -2.39 -0.02 1.63 16 38 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.03 1.53 5.72 -2.39 -0.01 1.51 16 40 H 0.38 19.63 6.35 -92.70 -0.59 19.04 16 41 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 42 H 0.11 2.94 8.06 -2.39 -0.02 2.92 16 43 H 0.08 2.21 5.16 -2.39 -0.01 2.19 16 44 H 0.09 2.24 8.14 -2.39 -0.02 2.23 16 45 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 46 H 0.10 1.84 7.17 -2.38 -0.02 1.82 16 47 H 0.16 3.27 6.54 -2.91 -0.02 3.25 16 48 H 0.42 4.78 9.06 -74.06 -0.67 4.11 16 Total: -1.00 -74.29 386.08 -0.94 -75.23 By element: Atomic # 1 Polarization: 44.09 SS G_CDS: -0.86 Total: 43.23 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: 5.36 Total: 1.32 kcal Atomic # 7 Polarization: -129.43 SS G_CDS: -6.20 Total: -135.63 kcal Atomic # 8 Polarization: -31.98 SS G_CDS: -1.27 Total: -33.25 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.10 kcal Total: -74.29 -0.94 -75.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267856436.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.817 kcal (2) G-P(sol) polarization free energy of solvation -74.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds