Wall clock time and date at job start Tue Mar 31 2020 17:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34326 * 126.16292 * 2 1 4 4 O 1.34759 * 107.10920 * 179.84566 * 3 2 1 5 5 C 1.33966 * 107.75614 * 0.42483 * 4 3 2 6 6 C 1.50702 * 125.62052 * 179.77494 * 5 4 3 7 7 N 1.46897 * 109.46832 * 269.95136 * 6 5 4 8 8 C 1.48072 * 111.00441 * 290.42474 * 7 6 5 9 9 C 1.54973 * 104.81819 * 213.97023 * 8 7 6 10 10 C 1.55307 * 101.74174 * 36.66275 * 9 8 7 11 11 C 1.46654 * 110.99845 * 169.99650 * 7 6 5 12 12 C 1.53889 * 110.88314 * 244.27926 * 11 7 6 13 13 C 1.54642 * 101.58917 * 96.53538 * 12 11 7 14 14 N 1.46845 * 105.50315 * 24.77453 * 13 12 11 15 15 C 1.46493 * 124.37327 * 163.15924 * 14 13 12 16 16 C 1.53000 * 109.47137 * 269.98548 * 15 14 13 17 17 C 1.50707 * 109.47194 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99597 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99884 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00276 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99649 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46933 * 90.00373 * 21 19 17 23 23 H 1.48503 * 109.46987 * 209.99783 * 21 19 17 24 24 H 1.48499 * 109.47537 * 330.00080 * 21 19 17 25 25 C 1.34669 * 111.26472 * 343.12159 * 14 13 12 26 26 O 1.21275 * 125.07568 * 180.86098 * 25 14 13 27 27 N 1.30257 * 108.75902 * 359.73238 * 5 4 3 28 28 H 1.09001 * 109.46953 * 269.68482 * 1 2 3 29 29 H 1.09000 * 109.47318 * 29.68080 * 1 2 3 30 30 H 1.09000 * 109.47161 * 149.68711 * 1 2 3 31 31 H 1.07997 * 126.44742 * 0.02562 * 3 2 1 32 32 H 1.08998 * 109.47114 * 29.95284 * 6 5 4 33 33 H 1.09000 * 109.47047 * 149.95577 * 6 5 4 34 34 H 1.09002 * 110.36953 * 332.80101 * 8 7 6 35 35 H 1.09002 * 110.37082 * 95.13223 * 8 7 6 36 36 H 1.08997 * 110.97423 * 278.54589 * 9 8 7 37 37 H 1.09004 * 110.97934 * 154.77676 * 9 8 7 38 38 H 1.09004 * 110.74751 * 206.63770 * 10 9 8 39 39 H 1.09001 * 110.74919 * 83.29363 * 10 9 8 40 40 H 1.09003 * 111.00586 * 214.61404 * 12 11 7 41 41 H 1.09002 * 111.00705 * 338.45979 * 12 11 7 42 42 H 1.08996 * 110.24038 * 265.76832 * 13 12 11 43 43 H 1.09001 * 110.31362 * 143.81634 * 13 12 11 44 44 H 1.09005 * 109.47191 * 29.98042 * 15 14 13 45 45 H 1.09002 * 109.47747 * 149.98225 * 15 14 13 46 46 H 1.09001 * 109.47164 * 299.99286 * 16 15 14 47 47 H 1.09000 * 109.47512 * 59.99883 * 16 15 14 48 48 H 0.96998 * 119.99775 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2997 1.0845 0.0000 4 8 3.5735 0.6445 0.0035 5 6 3.5431 -0.6947 -0.0039 6 6 4.7480 -1.5999 -0.0081 7 7 5.1397 -1.8873 -1.3944 8 6 4.1395 -2.7529 -2.0600 9 6 4.9647 -3.6452 -3.0215 10 6 6.2546 -3.8938 -2.1931 11 6 6.4389 -2.5657 -1.4436 12 6 7.4876 -1.6918 -2.1541 13 6 8.1926 -1.0160 -0.9551 14 7 7.9867 -1.9214 0.1826 15 6 8.7601 -1.8765 1.4259 16 6 9.9852 -2.7840 1.2974 17 6 10.7812 -2.7374 2.5763 18 1 10.4469 -2.1216 3.3982 19 6 11.9361 -3.4808 2.6969 20 7 12.3434 -4.2301 1.6958 21 14 12.9231 -3.4224 4.2818 22 1 12.4408 -4.4811 5.2046 23 1 14.3595 -3.6466 3.9789 24 1 12.7538 -2.0931 4.9218 25 6 6.9944 -2.7978 -0.0642 26 8 6.6063 -3.6470 0.7097 27 7 2.3006 -1.0856 -0.0060 28 1 -0.3633 -0.0057 1.0277 29 1 -0.3634 0.8928 -0.5089 30 1 -0.3633 -0.8872 -0.5187 31 1 1.9769 2.1151 0.0004 32 1 5.5730 -1.1091 0.5082 33 1 4.5038 -2.5322 0.5011 34 1 3.6199 -3.3671 -1.3245 35 1 3.4274 -2.1477 -2.6211 36 1 5.1912 -3.1159 -3.9470 37 1 4.4460 -4.5818 -3.2264 38 1 7.1033 -4.0880 -2.8490 39 1 6.1109 -4.7161 -1.4921 40 1 8.1863 -2.3049 -2.7233 41 1 7.0094 -0.9506 -2.7945 42 1 7.7415 -0.0450 -0.7507 43 1 9.2575 -0.9014 -1.1578 44 1 9.0844 -0.8532 1.6154 45 1 8.1387 -2.2198 2.2530 46 1 9.6610 -3.8073 1.1080 47 1 10.6066 -2.4408 0.4704 48 1 13.1561 -4.7528 1.7806 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274373339.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:00 Heat of formation + Delta-G solvation = -0.448800 kcal Electronic energy + Delta-G solvation = -29689.694542 eV Core-core repulsion = 25746.365920 eV Total energy + Delta-G solvation = -3943.328622 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -43.45420 -41.24996 -37.76441 -36.08788 -35.27986 -33.82144 -33.38282 -31.78883 -31.16327 -29.10421 -27.99539 -27.87557 -25.98309 -25.05821 -23.47689 -21.88889 -21.84036 -21.67286 -20.81480 -20.33874 -18.58273 -17.22279 -17.10895 -16.66056 -16.27786 -15.90878 -15.68305 -15.28771 -14.85880 -14.60918 -14.46752 -14.29546 -13.74956 -13.54736 -13.47754 -13.36314 -13.10011 -12.81155 -12.70879 -12.46436 -12.40748 -12.16699 -12.06912 -11.94677 -11.52290 -11.30608 -11.21938 -11.06037 -10.97953 -10.91988 -10.71503 -10.67996 -10.61396 -10.06392 -9.89595 -9.66272 -9.22899 -8.96137 -8.52136 -8.39244 -8.07115 -6.04526 -4.08116 1.28283 2.40339 2.61622 2.78613 3.30635 3.35694 3.38017 3.43774 3.66926 3.97401 4.25305 4.43692 4.46433 4.54978 4.62535 4.69759 4.88104 5.02112 5.05605 5.11109 5.21192 5.29295 5.30013 5.31836 5.39594 5.44132 5.47871 5.67562 5.74337 5.75338 5.78500 5.79950 5.81182 5.92198 5.95979 6.00140 6.04515 6.13074 6.14812 6.41675 6.62058 6.67513 6.76658 6.92698 7.42673 7.62008 7.63113 7.79632 7.94529 8.30008 8.53148 8.98335 9.56160 11.06855 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015979 B = 0.002934 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.841787 B = 9539.495901 C =10499.714158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.019 4.019 3 C -0.081 4.081 4 O -0.193 6.193 5 C 0.215 3.785 6 C 0.133 3.867 7 N -0.494 5.494 8 C 0.042 3.958 9 C -0.125 4.125 10 C -0.123 4.123 11 C 0.067 3.933 12 C -0.113 4.113 13 C 0.099 3.901 14 N -0.606 5.606 15 C 0.126 3.874 16 C 0.013 3.987 17 C -0.523 4.523 18 H 0.057 0.943 19 C 0.059 3.941 20 N -0.892 5.892 21 Si 0.895 3.105 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.273 1.273 25 C 0.505 3.495 26 O -0.527 6.527 27 N -0.477 5.477 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.213 0.787 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.060 0.940 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.097 0.903 42 H 0.069 0.931 43 H 0.083 0.917 44 H 0.067 0.933 45 H 0.070 0.930 46 H 0.020 0.980 47 H 0.018 0.982 48 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.066 9.859 -11.319 25.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.139 4.139 3 C -0.152 4.152 4 O -0.078 6.078 5 C 0.008 3.992 6 C 0.005 3.995 7 N -0.220 5.220 8 C -0.085 4.085 9 C -0.163 4.163 10 C -0.162 4.162 11 C -0.025 4.025 12 C -0.152 4.152 13 C -0.024 4.024 14 N -0.338 5.338 15 C 0.006 3.994 16 C -0.025 4.025 17 C -0.562 4.562 18 H 0.075 0.925 19 C -0.142 4.142 20 N -0.531 5.531 21 Si 0.722 3.278 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.198 1.198 25 C 0.290 3.710 26 O -0.403 6.403 27 N -0.208 5.208 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.229 0.771 32 H 0.122 0.878 33 H 0.114 0.886 34 H 0.078 0.922 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.105 0.895 41 H 0.116 0.884 42 H 0.087 0.913 43 H 0.101 0.899 44 H 0.086 0.914 45 H 0.089 0.911 46 H 0.039 0.961 47 H 0.036 0.964 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -20.164 9.195 -11.112 24.792 hybrid contribution 0.822 0.156 1.336 1.576 sum -19.342 9.351 -9.776 23.604 Atomic orbital electron populations 1.20083 0.86598 1.03223 1.02822 1.21819 0.98120 0.88326 1.05624 1.24757 0.80382 1.00917 1.09115 1.84473 1.30355 1.23970 1.69037 1.25949 0.94744 0.79242 0.99299 1.20777 0.90931 0.96197 0.91603 1.63677 1.01413 1.43134 1.13781 1.23217 0.94212 0.94161 0.96915 1.22736 0.95518 0.99739 0.98279 1.22717 0.98936 0.95676 0.98851 1.22015 0.90444 0.95073 0.95003 1.22648 0.96042 0.99515 0.96972 1.22136 1.01687 0.93164 0.85447 1.48676 1.34658 1.32825 1.17671 1.21850 0.93955 1.01137 0.82461 1.19397 0.90793 0.94844 0.97467 1.21078 1.07952 1.27319 0.99816 0.92486 1.24995 0.97508 0.95180 0.96548 1.69968 1.23579 1.28514 1.31053 0.86554 0.79193 0.78487 0.83537 1.20575 1.21178 1.19803 1.20630 0.80526 0.81303 0.88574 1.90723 1.62977 1.34178 1.52465 1.70371 1.00415 1.31354 1.18652 0.90806 0.90829 0.90645 0.77084 0.87819 0.88612 0.92158 0.90049 0.90441 0.90352 0.89648 0.89809 0.89490 0.88424 0.91298 0.89888 0.91426 0.91130 0.96115 0.96369 0.92909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.51 10.43 36.01 0.38 -0.14 16 2 C -0.02 -0.21 7.11 -82.81 -0.59 -0.80 16 3 C -0.08 -0.81 12.08 29.35 0.35 -0.46 16 4 O -0.19 -2.52 10.78 5.35 0.06 -2.46 16 5 C 0.22 2.99 7.34 -12.95 -0.10 2.90 16 6 C 0.13 1.91 4.35 -4.98 -0.02 1.89 16 7 N -0.49 -6.35 4.79 -218.85 -1.05 -7.40 16 8 C 0.04 0.49 6.20 -2.14 -0.01 0.47 16 9 C -0.12 -1.23 7.08 -24.47 -0.17 -1.40 16 10 C -0.12 -1.52 6.05 -25.19 -0.15 -1.67 16 11 C 0.07 0.92 0.99 -132.20 -0.13 0.79 16 12 C -0.11 -1.31 6.42 -25.40 -0.16 -1.48 16 13 C 0.10 1.34 7.36 -2.99 -0.02 1.32 16 14 N -0.61 -10.74 2.78 -172.51 -0.48 -11.22 16 15 C 0.13 2.62 5.88 -4.05 -0.02 2.60 16 16 C 0.01 0.33 5.30 -27.88 -0.15 0.19 16 17 C -0.52 -14.73 9.11 -34.44 -0.31 -15.05 16 18 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 19 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 20 N -0.89 -26.87 13.29 55.43 0.74 -26.13 16 21 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 25 C 0.50 9.08 4.46 -11.13 -0.05 9.03 16 26 O -0.53 -11.44 16.06 5.56 0.09 -11.35 16 27 N -0.48 -6.60 11.28 -7.36 -0.08 -6.69 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.21 1.19 8.06 -52.49 -0.42 0.76 16 32 H 0.10 1.57 6.79 -51.93 -0.35 1.21 16 33 H 0.10 1.53 6.92 -51.93 -0.36 1.17 16 34 H 0.06 0.77 7.62 -51.93 -0.40 0.37 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.95 7.39 -51.93 -0.38 0.56 16 39 H 0.08 1.21 7.51 -51.93 -0.39 0.82 16 40 H 0.09 0.94 7.45 -51.93 -0.39 0.55 16 41 H 0.10 0.96 8.07 -51.93 -0.42 0.54 16 42 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 45 H 0.07 1.55 7.93 -51.93 -0.41 1.14 16 46 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 388.79 15.07 5.86 5.86 Total: -1.00 -34.20 388.79 -8.87 -43.06 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -7.71 Total: -0.12 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -1.26 Total: -0.20 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: -0.87 Total: -51.43 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: 0.15 Total: -13.81 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.20 -8.87 -43.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274373339.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.615 kcal (2) G-P(sol) polarization free energy of solvation -34.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds