Wall clock time and date at job start Tue Mar 31 2020 17:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34326 * 126.16292 * 2 1 4 4 O 1.34759 * 107.10920 * 179.84566 * 3 2 1 5 5 C 1.33966 * 107.75614 * 0.42483 * 4 3 2 6 6 C 1.50702 * 125.62052 * 179.77494 * 5 4 3 7 7 N 1.46897 * 109.46832 * 269.95136 * 6 5 4 8 8 C 1.48072 * 111.00441 * 290.42474 * 7 6 5 9 9 C 1.54973 * 104.81819 * 213.97023 * 8 7 6 10 10 C 1.55307 * 101.74174 * 36.66275 * 9 8 7 11 11 C 1.46654 * 110.99845 * 169.99650 * 7 6 5 12 12 C 1.53889 * 110.88314 * 244.27926 * 11 7 6 13 13 C 1.54642 * 101.58917 * 96.53538 * 12 11 7 14 14 N 1.46845 * 105.50315 * 24.77453 * 13 12 11 15 15 C 1.46493 * 124.37327 * 163.15924 * 14 13 12 16 16 C 1.53000 * 109.47137 * 269.98548 * 15 14 13 17 17 C 1.50707 * 109.47194 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99597 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99884 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00276 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99649 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46933 * 90.00373 * 21 19 17 23 23 H 1.48503 * 109.46987 * 209.99783 * 21 19 17 24 24 H 1.48499 * 109.47537 * 330.00080 * 21 19 17 25 25 C 1.34669 * 111.26472 * 343.12159 * 14 13 12 26 26 O 1.21275 * 125.07568 * 180.86098 * 25 14 13 27 27 N 1.30257 * 108.75902 * 359.73238 * 5 4 3 28 28 H 1.09001 * 109.46953 * 269.68482 * 1 2 3 29 29 H 1.09000 * 109.47318 * 29.68080 * 1 2 3 30 30 H 1.09000 * 109.47161 * 149.68711 * 1 2 3 31 31 H 1.07997 * 126.44742 * 0.02562 * 3 2 1 32 32 H 1.08998 * 109.47114 * 29.95284 * 6 5 4 33 33 H 1.09000 * 109.47047 * 149.95577 * 6 5 4 34 34 H 1.09002 * 110.36953 * 332.80101 * 8 7 6 35 35 H 1.09002 * 110.37082 * 95.13223 * 8 7 6 36 36 H 1.08997 * 110.97423 * 278.54589 * 9 8 7 37 37 H 1.09004 * 110.97934 * 154.77676 * 9 8 7 38 38 H 1.09004 * 110.74751 * 206.63770 * 10 9 8 39 39 H 1.09001 * 110.74919 * 83.29363 * 10 9 8 40 40 H 1.09003 * 111.00586 * 214.61404 * 12 11 7 41 41 H 1.09002 * 111.00705 * 338.45979 * 12 11 7 42 42 H 1.08996 * 110.24038 * 265.76832 * 13 12 11 43 43 H 1.09001 * 110.31362 * 143.81634 * 13 12 11 44 44 H 1.09005 * 109.47191 * 29.98042 * 15 14 13 45 45 H 1.09002 * 109.47747 * 149.98225 * 15 14 13 46 46 H 1.09001 * 109.47164 * 299.99286 * 16 15 14 47 47 H 1.09000 * 109.47512 * 59.99883 * 16 15 14 48 48 H 0.96998 * 119.99775 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2997 1.0845 0.0000 4 8 3.5735 0.6445 0.0035 5 6 3.5431 -0.6947 -0.0039 6 6 4.7480 -1.5999 -0.0081 7 7 5.1397 -1.8873 -1.3944 8 6 4.1395 -2.7529 -2.0600 9 6 4.9647 -3.6452 -3.0215 10 6 6.2546 -3.8938 -2.1931 11 6 6.4389 -2.5657 -1.4436 12 6 7.4876 -1.6918 -2.1541 13 6 8.1926 -1.0160 -0.9551 14 7 7.9867 -1.9214 0.1826 15 6 8.7601 -1.8765 1.4259 16 6 9.9852 -2.7840 1.2974 17 6 10.7812 -2.7374 2.5763 18 1 10.4469 -2.1216 3.3982 19 6 11.9361 -3.4808 2.6969 20 7 12.3434 -4.2301 1.6958 21 14 12.9231 -3.4224 4.2818 22 1 12.4408 -4.4811 5.2046 23 1 14.3595 -3.6466 3.9789 24 1 12.7538 -2.0931 4.9218 25 6 6.9944 -2.7978 -0.0642 26 8 6.6063 -3.6470 0.7097 27 7 2.3006 -1.0856 -0.0060 28 1 -0.3633 -0.0057 1.0277 29 1 -0.3634 0.8928 -0.5089 30 1 -0.3633 -0.8872 -0.5187 31 1 1.9769 2.1151 0.0004 32 1 5.5730 -1.1091 0.5082 33 1 4.5038 -2.5322 0.5011 34 1 3.6199 -3.3671 -1.3245 35 1 3.4274 -2.1477 -2.6211 36 1 5.1912 -3.1159 -3.9470 37 1 4.4460 -4.5818 -3.2264 38 1 7.1033 -4.0880 -2.8490 39 1 6.1109 -4.7161 -1.4921 40 1 8.1863 -2.3049 -2.7233 41 1 7.0094 -0.9506 -2.7945 42 1 7.7415 -0.0450 -0.7507 43 1 9.2575 -0.9014 -1.1578 44 1 9.0844 -0.8532 1.6154 45 1 8.1387 -2.2198 2.2530 46 1 9.6610 -3.8073 1.1080 47 1 10.6066 -2.4408 0.4704 48 1 13.1561 -4.7528 1.7806 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274373339.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:59 Heat of formation + Delta-G solvation = -25.868580 kcal Electronic energy + Delta-G solvation = -29690.796827 eV Core-core repulsion = 25746.365920 eV Total energy + Delta-G solvation = -3944.430907 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -44.37304 -42.47380 -39.01245 -37.56769 -36.18662 -35.60941 -34.58109 -33.42233 -32.00451 -30.75314 -29.04980 -28.78360 -26.97034 -26.89360 -24.66819 -23.55984 -22.79636 -22.63465 -21.80244 -21.69038 -19.91017 -18.70272 -18.19504 -18.12214 -17.35650 -17.28996 -16.85981 -16.62171 -16.32884 -15.95808 -15.62879 -15.41268 -14.96444 -14.73150 -14.51903 -14.47211 -14.33569 -14.15647 -13.99213 -13.76083 -13.56568 -13.29985 -13.14520 -13.11332 -12.91145 -12.88240 -12.57875 -12.39367 -12.19778 -12.03487 -11.98045 -11.95275 -11.80651 -11.61799 -11.56744 -11.42902 -11.00625 -10.61586 -9.87211 -9.66224 -9.54853 -8.25175 -6.37753 0.37940 1.32955 1.38189 1.40206 1.50951 1.57104 1.70258 2.04076 2.39543 2.64950 2.99694 3.08512 3.10639 3.45789 3.55354 3.73246 3.85175 3.95702 4.06058 4.08515 4.14344 4.20264 4.28658 4.30758 4.46955 4.59209 4.61298 4.69225 4.70785 4.78436 4.82436 4.84417 4.85458 4.90091 4.96135 5.00793 5.03165 5.06848 5.11756 5.21073 5.30559 5.39304 5.44069 5.55324 5.57170 5.63892 5.79790 6.12783 6.19872 6.70919 6.77036 7.07822 7.31973 8.86932 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015979 B = 0.002934 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.841787 B = 9539.495901 C =10499.714158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.042 4.042 3 C -0.067 4.067 4 O -0.205 6.205 5 C 0.193 3.807 6 C 0.145 3.855 7 N -0.481 5.481 8 C 0.042 3.958 9 C -0.109 4.109 10 C -0.127 4.127 11 C 0.072 3.928 12 C -0.100 4.100 13 C 0.092 3.908 14 N -0.612 5.612 15 C 0.141 3.859 16 C 0.026 3.974 17 C -0.545 4.545 18 H 0.065 0.935 19 C 0.002 3.998 20 N -0.931 5.931 21 Si 0.968 3.032 22 H -0.277 1.277 23 H -0.279 1.279 24 H -0.258 1.258 25 C 0.494 3.506 26 O -0.577 6.577 27 N -0.497 5.497 28 H 0.080 0.920 29 H 0.103 0.897 30 H 0.068 0.932 31 H 0.258 0.742 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.040 0.960 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.102 0.898 39 H 0.053 0.947 40 H 0.099 0.901 41 H 0.127 0.873 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.091 0.909 45 H 0.052 0.948 46 H -0.026 1.026 47 H 0.004 0.996 48 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.954 12.418 -12.623 27.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.162 4.162 3 C -0.136 4.136 4 O -0.090 6.090 5 C -0.014 4.014 6 C 0.016 3.984 7 N -0.207 5.207 8 C -0.085 4.085 9 C -0.147 4.147 10 C -0.166 4.166 11 C -0.021 4.021 12 C -0.138 4.138 13 C -0.029 4.029 14 N -0.344 5.344 15 C 0.020 3.980 16 C -0.012 4.012 17 C -0.584 4.584 18 H 0.083 0.917 19 C -0.197 4.197 20 N -0.571 5.571 21 Si 0.792 3.208 22 H -0.203 1.203 23 H -0.204 1.204 24 H -0.182 1.182 25 C 0.281 3.719 26 O -0.457 6.457 27 N -0.229 5.229 28 H 0.099 0.901 29 H 0.122 0.878 30 H 0.087 0.913 31 H 0.274 0.726 32 H 0.108 0.892 33 H 0.085 0.915 34 H 0.058 0.942 35 H 0.110 0.890 36 H 0.122 0.878 37 H 0.111 0.889 38 H 0.120 0.880 39 H 0.071 0.929 40 H 0.117 0.883 41 H 0.145 0.855 42 H 0.108 0.892 43 H 0.104 0.896 44 H 0.110 0.890 45 H 0.070 0.930 46 H -0.008 1.008 47 H 0.022 0.978 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -21.058 11.790 -12.449 27.156 hybrid contribution 1.009 -0.624 1.759 2.122 sum -20.049 11.166 -10.690 25.316 Atomic orbital electron populations 1.20201 0.84117 1.04422 1.03598 1.22480 0.99778 0.87854 1.06043 1.25678 0.78963 1.02560 1.06447 1.84460 1.32024 1.23397 1.69108 1.25641 0.94515 0.79728 1.01501 1.20445 0.90863 0.95083 0.92024 1.63853 1.01314 1.42843 1.12740 1.23255 0.94259 0.94226 0.96764 1.22735 0.93471 1.00325 0.98128 1.22762 1.01196 0.93916 0.98735 1.22092 0.91285 0.96556 0.92173 1.22713 0.95201 0.99661 0.96251 1.22451 1.02478 0.93382 0.84609 1.48754 1.34100 1.33676 1.17870 1.21399 0.91927 1.00931 0.83793 1.19192 0.92436 0.93205 0.96402 1.21537 1.08485 1.27583 1.00774 0.91659 1.25989 0.98770 0.94572 1.00322 1.70104 1.24223 1.29331 1.33417 0.85400 0.77483 0.79098 0.78788 1.20308 1.20389 1.18170 1.21504 0.80190 0.80232 0.90002 1.90678 1.64420 1.36162 1.54418 1.70349 1.00837 1.33036 1.18683 0.90149 0.87822 0.91289 0.72638 0.89179 0.91547 0.94183 0.89024 0.87809 0.88923 0.87967 0.92861 0.88288 0.85457 0.89152 0.89586 0.89036 0.92988 1.00777 0.97766 0.92659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.83 10.43 71.24 0.74 -0.08 16 2 C -0.04 -0.86 7.11 41.26 0.29 -0.57 16 3 C -0.07 -1.17 12.08 66.93 0.81 -0.36 16 4 O -0.20 -5.11 10.78 -3.78 -0.04 -5.15 16 5 C 0.19 5.43 7.34 88.34 0.65 6.07 16 6 C 0.14 4.34 4.35 85.56 0.37 4.71 16 7 N -0.48 -12.21 4.79 -846.32 -4.05 -16.27 16 8 C 0.04 0.94 6.20 86.75 0.54 1.48 16 9 C -0.11 -1.93 7.08 32.06 0.23 -1.71 16 10 C -0.13 -3.11 6.05 31.59 0.19 -2.92 16 11 C 0.07 1.94 0.99 3.27 0.00 1.94 16 12 C -0.10 -2.11 6.42 31.45 0.20 -1.90 16 13 C 0.09 2.39 7.36 86.87 0.64 3.03 16 14 N -0.61 -22.35 2.78 -818.14 -2.28 -24.63 16 15 C 0.14 6.10 5.88 86.38 0.51 6.60 16 16 C 0.03 1.39 5.30 29.85 0.16 1.55 16 17 C -0.55 -31.47 9.11 25.60 0.23 -31.24 16 18 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 19 C 0.00 0.10 5.46 84.65 0.46 0.56 16 20 N -0.93 -57.48 13.29 21.45 0.28 -57.19 16 21 Si 0.97 44.73 29.54 68.60 2.03 46.75 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 23 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 24 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 25 C 0.49 18.71 4.46 87.61 0.39 19.10 16 26 O -0.58 -27.20 16.06 -3.01 -0.05 -27.25 16 27 N -0.50 -13.79 11.28 -291.98 -3.29 -17.09 16 28 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.26 1.76 8.06 -2.91 -0.02 1.74 16 32 H 0.09 2.88 6.79 -2.39 -0.02 2.86 16 33 H 0.07 2.35 6.92 -2.39 -0.02 2.34 16 34 H 0.04 1.07 7.62 -2.39 -0.02 1.05 16 35 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 38 H 0.10 2.13 7.39 -2.39 -0.02 2.11 16 39 H 0.05 1.63 7.51 -2.39 -0.02 1.62 16 40 H 0.10 1.88 7.45 -2.39 -0.02 1.86 16 41 H 0.13 2.00 8.07 -2.39 -0.02 1.98 16 42 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 44 H 0.09 3.49 8.14 -2.38 -0.02 3.47 16 45 H 0.05 2.41 7.93 -2.39 -0.02 2.40 16 46 H -0.03 -1.65 8.14 -2.39 -0.02 -1.67 16 47 H 0.00 0.22 8.14 -2.39 -0.02 0.21 16 48 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -79.46 388.79 -0.03 -79.49 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 0.95 Total: 15.06 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: 6.42 Total: 6.27 kcal Atomic # 7 Polarization: -105.84 SS G_CDS: -9.34 Total: -115.18 kcal Atomic # 8 Polarization: -32.31 SS G_CDS: -0.09 Total: -32.40 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -79.46 -0.03 -79.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274373339.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.622 kcal (2) G-P(sol) polarization free energy of solvation -79.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds