Wall clock time and date at job start Tue Mar 31 2020 18:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.46698 * 2 1 4 4 C 1.38630 * 120.46999 * 266.21426 * 3 2 1 5 5 C 1.38586 * 118.49332 * 180.27002 * 4 3 2 6 6 C 1.38606 * 119.34558 * 359.74756 * 5 4 3 7 7 N 1.31494 * 120.90282 * 359.97438 * 6 5 4 8 8 C 1.32746 * 121.64275 * 0.02667 * 7 6 5 9 9 C 1.48173 * 119.72102 * 179.97438 * 8 7 6 10 10 O 1.21513 * 119.99395 * 255.79096 * 9 8 7 11 11 N 1.34771 * 120.00118 * 75.79614 * 9 8 7 12 12 C 1.46931 * 120.62994 * 355.00386 * 11 9 8 13 13 C 1.53195 * 108.77328 * 233.58841 * 12 11 9 14 14 C 1.53032 * 109.31450 * 305.36586 * 13 12 11 15 15 O 1.42903 * 109.45909 * 301.35637 * 14 13 12 16 16 C 1.53000 * 109.46235 * 181.38579 * 14 13 12 17 17 N 1.46499 * 109.47251 * 184.99874 * 16 14 13 18 18 C 1.36939 * 119.99757 * 180.02562 * 17 16 14 19 19 H 1.07993 * 120.00432 * 359.97438 * 18 17 16 20 20 C 1.38812 * 119.99632 * 180.02562 * 18 17 16 21 21 N 1.31617 * 120.00517 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99969 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47224 * 89.99836 * 22 20 18 24 24 H 1.48503 * 109.47377 * 209.99959 * 22 20 18 25 25 H 1.48499 * 109.46902 * 330.00169 * 22 20 18 26 26 C 1.53040 * 109.53933 * 61.36454 * 14 13 12 27 27 C 1.46925 * 120.63194 * 174.98191 * 11 9 8 28 28 H 1.09003 * 109.47170 * 60.00624 * 1 2 3 29 29 H 1.09006 * 109.46936 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47408 * 299.99957 * 1 2 3 31 31 H 1.08996 * 109.46929 * 239.99841 * 2 1 3 32 32 H 1.09003 * 109.46667 * 119.99535 * 2 1 3 33 33 H 1.08007 * 120.76031 * 0.02562 * 4 3 2 34 34 H 1.07990 * 120.32985 * 179.72896 * 5 4 3 35 35 H 1.07998 * 119.54481 * 180.02562 * 6 5 4 36 36 H 1.08998 * 109.58818 * 113.80004 * 12 11 9 37 37 H 1.08996 * 109.58851 * 353.37246 * 12 11 9 38 38 H 1.09006 * 109.49746 * 185.40880 * 13 12 11 39 39 H 1.09002 * 109.49617 * 65.31869 * 13 12 11 40 40 H 0.96698 * 114.00166 * 180.02562 * 15 14 13 41 41 H 1.09001 * 109.47072 * 305.00333 * 16 14 13 42 42 H 1.09006 * 109.47095 * 64.99645 * 16 14 13 43 43 H 0.96994 * 120.00147 * 359.97438 * 17 16 14 44 44 H 0.96993 * 120.00581 * 179.97438 * 21 20 18 45 45 H 1.09001 * 109.49926 * 58.59020 * 26 14 13 46 46 H 1.09001 * 109.49750 * 178.68487 * 26 14 13 47 47 H 1.08994 * 109.58980 * 246.19596 * 27 11 9 48 48 H 1.08992 * 109.58632 * 6.62778 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.3409 2.0573 -1.1922 5 6 2.8049 3.3623 -1.1442 6 6 2.9408 3.9901 0.0841 7 7 2.6354 3.3646 1.1997 8 6 2.1879 2.1149 1.1973 9 6 1.8571 1.4507 2.4799 10 8 2.6123 0.6212 2.9469 11 7 0.7186 1.7665 3.1283 12 6 -0.1502 2.8435 2.6342 13 6 -0.4003 3.8369 3.7734 14 6 -0.9564 3.0870 4.9859 15 8 -2.1681 2.4234 4.6206 16 6 -1.2399 4.0810 6.1140 17 7 -1.6588 3.3519 7.3136 18 6 -1.9682 4.0371 8.4581 19 1 -1.9031 5.1149 8.4766 20 6 -2.3647 3.3461 9.5949 21 7 -2.4436 2.0325 9.5726 22 14 -2.7861 4.2807 11.1565 23 1 -4.2329 4.6157 11.1577 24 1 -2.4722 3.4376 12.3380 25 1 -1.9883 5.5318 11.2151 26 6 0.0670 2.0536 5.4622 27 6 0.3223 1.0400 4.3423 28 1 -0.3634 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.2262 1.5465 -2.1369 34 1 3.0584 3.8848 -2.0546 35 1 3.3017 5.0072 0.1252 36 1 -1.0992 2.4236 2.3007 37 1 0.3374 3.3547 1.8042 38 1 -1.1198 4.5887 3.4490 39 1 0.5370 4.3228 4.0446 40 1 -2.5777 1.9269 5.3422 41 1 -0.3364 4.6506 6.3319 42 1 -2.0336 4.7622 5.8071 43 1 -1.7177 2.3839 7.2969 44 1 -2.7203 1.5497 10.3671 45 1 0.9998 2.5563 5.7176 46 1 -0.3201 1.5361 6.3400 47 1 -0.5881 0.4730 4.1481 48 1 1.1216 0.3611 4.6392 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328174810.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:14 Heat of formation + Delta-G solvation = -39.270059 kcal Electronic energy + Delta-G solvation = -29706.545046 eV Core-core repulsion = 25761.533008 eV Total energy + Delta-G solvation = -3945.012039 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.18683 -39.70778 -38.28493 -35.56108 -35.03121 -34.01831 -32.69796 -31.82514 -31.09707 -30.51241 -29.95149 -26.82400 -25.16120 -24.59113 -23.88889 -23.01547 -22.05221 -21.65399 -20.44635 -19.36716 -17.81788 -17.41397 -17.17465 -16.54772 -15.95784 -15.77928 -15.10926 -14.93805 -14.74332 -14.52726 -14.22817 -14.11402 -14.06519 -13.78529 -13.53596 -13.42447 -13.21073 -13.00698 -12.93573 -12.54354 -12.46505 -12.23576 -11.85550 -11.70848 -11.51934 -11.30219 -11.09102 -11.01326 -10.93927 -10.83041 -10.38246 -10.30131 -10.15202 -10.07823 -9.71707 -9.60252 -9.39754 -9.24975 -8.93546 -8.58109 -6.99772 -5.82443 -3.11452 0.57176 0.88435 2.39529 2.84905 3.36051 3.41553 3.47064 3.48487 3.97483 4.23151 4.38661 4.53741 4.56097 4.57840 4.60639 4.86371 4.90257 4.94548 5.02369 5.05106 5.11526 5.20303 5.25477 5.40529 5.44982 5.50277 5.52634 5.58256 5.62879 5.65079 5.71981 5.83094 5.89758 5.91429 5.95874 6.06193 6.08461 6.09769 6.25161 6.35614 6.43965 6.58833 6.69781 6.74469 7.31635 7.52346 7.66313 8.01174 8.08273 8.36360 9.47315 10.01199 10.35462 11.40369 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.023717 B = 0.002673 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.294620 B =10470.932792 C =10840.632596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 C -0.095 4.095 4 C -0.075 4.075 5 C -0.159 4.159 6 C 0.096 3.904 7 N -0.454 5.454 8 C 0.101 3.899 9 C 0.580 3.420 10 O -0.532 6.532 11 N -0.590 5.590 12 C 0.118 3.882 13 C -0.114 4.114 14 C 0.130 3.870 15 O -0.562 6.562 16 C 0.129 3.871 17 N -0.730 5.730 18 C -0.240 4.240 19 H 0.070 0.930 20 C -0.012 4.012 21 N -0.934 5.934 22 Si 0.908 3.092 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.282 1.282 26 C -0.155 4.155 27 C 0.117 3.883 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.140 0.860 34 H 0.139 0.861 35 H 0.163 0.837 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.383 0.617 41 H 0.026 0.974 42 H 0.029 0.971 43 H 0.381 0.619 44 H 0.256 0.744 45 H 0.074 0.926 46 H 0.093 0.907 47 H 0.076 0.924 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.683 -0.699 -25.462 26.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.130 4.130 3 C -0.098 4.098 4 C -0.101 4.101 5 C -0.178 4.178 6 C -0.063 4.063 7 N -0.164 5.164 8 C -0.039 4.039 9 C 0.365 3.635 10 O -0.408 6.408 11 N -0.322 5.322 12 C -0.005 4.005 13 C -0.153 4.153 14 C 0.089 3.911 15 O -0.370 6.370 16 C 0.001 3.999 17 N -0.376 5.376 18 C -0.371 4.371 19 H 0.088 0.912 20 C -0.208 4.208 21 N -0.582 5.582 22 Si 0.739 3.261 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.208 1.208 26 C -0.194 4.194 27 C -0.005 4.005 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.158 0.842 34 H 0.157 0.843 35 H 0.180 0.820 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.232 0.768 41 H 0.044 0.956 42 H 0.047 0.953 43 H 0.216 0.784 44 H 0.066 0.934 45 H 0.093 0.907 46 H 0.111 0.889 47 H 0.094 0.906 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.276 -0.327 -24.822 26.168 hybrid contribution -0.405 -0.226 0.660 0.807 sum 7.871 -0.554 -24.162 25.418 Atomic orbital electron populations 1.21769 0.93847 1.02501 1.02411 1.20646 0.96813 0.91394 1.04179 1.20803 0.98653 0.97733 0.92597 1.21472 0.96161 0.94648 0.97847 1.22319 1.00030 0.95648 0.99841 1.22850 0.96144 1.00030 0.87310 1.67715 1.09403 1.07681 1.31559 1.20939 0.98375 0.91122 0.93431 1.17884 0.81078 0.81734 0.82786 1.90795 1.48844 1.34645 1.66522 1.48035 1.21836 1.35383 1.26944 1.21658 0.94286 0.87919 0.96649 1.21814 1.01562 0.97544 0.94372 1.21288 0.84250 0.91839 0.93706 1.86344 1.39145 1.69794 1.41697 1.21317 0.97584 0.93921 0.87101 1.42331 1.81435 1.05919 1.07902 1.19201 1.37652 0.91264 0.89011 0.91166 1.24729 1.02312 0.95582 0.98187 1.69626 1.54157 1.05331 1.29130 0.86173 0.78136 0.78645 0.83125 1.21684 1.21741 1.20772 1.22531 1.00627 0.97964 0.98273 1.21674 1.00988 0.94573 0.83255 0.92458 0.91729 0.92175 0.90273 0.89698 0.84242 0.84288 0.82026 0.90446 0.90502 0.90005 0.90051 0.76787 0.95618 0.95335 0.78413 0.93416 0.90704 0.88878 0.90619 0.89096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.89 37.16 0.37 -0.87 16 2 C -0.09 -0.84 5.62 -27.88 -0.16 -1.00 16 3 C -0.10 -0.97 5.18 -104.10 -0.54 -1.51 16 4 C -0.08 -0.57 9.84 -39.31 -0.39 -0.95 16 5 C -0.16 -1.08 10.12 -39.32 -0.40 -1.48 16 6 C 0.10 0.84 11.18 -17.56 -0.20 0.64 16 7 N -0.45 -5.63 9.54 -9.80 -0.09 -5.72 16 8 C 0.10 1.29 4.87 -83.01 -0.40 0.89 16 9 C 0.58 8.75 6.08 -12.18 -0.07 8.68 16 10 O -0.53 -9.62 15.86 5.35 0.08 -9.54 16 11 N -0.59 -8.24 2.97 -173.76 -0.52 -8.75 16 12 C 0.12 1.48 6.08 -3.71 -0.02 1.46 16 13 C -0.11 -1.57 5.11 -26.61 -0.14 -1.70 16 14 C 0.13 2.09 0.71 -90.58 -0.06 2.02 16 15 O -0.56 -9.06 11.70 -35.23 -0.41 -9.47 16 16 C 0.13 2.54 5.43 -4.04 -0.02 2.52 16 17 N -0.73 -17.62 5.07 -59.91 -0.30 -17.92 16 18 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 19 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 20 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 21 N -0.93 -27.45 13.06 55.49 0.72 -26.72 16 22 Si 0.91 22.24 29.55 -169.99 -5.02 17.21 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 C -0.16 -2.50 4.88 -26.61 -0.13 -2.63 16 27 C 0.12 1.70 6.20 -3.71 -0.02 1.67 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 31 H 0.08 0.55 8.07 -51.93 -0.42 0.13 16 32 H 0.08 0.97 6.76 -51.93 -0.35 0.61 16 33 H 0.14 0.66 8.06 -52.48 -0.42 0.23 16 34 H 0.14 0.51 8.06 -52.49 -0.42 0.08 16 35 H 0.16 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.08 0.96 7.81 -51.93 -0.41 0.56 16 37 H 0.08 0.92 5.82 -51.93 -0.30 0.61 16 38 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.38 6.20 8.19 45.56 0.37 6.57 16 41 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.38 9.35 5.55 -40.82 -0.23 9.13 16 44 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 45 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 46 H 0.09 1.66 6.53 -51.93 -0.34 1.32 16 47 H 0.08 1.03 7.81 -51.93 -0.41 0.63 16 48 H 0.09 1.40 7.00 -51.93 -0.36 1.03 16 LS Contribution 384.69 15.07 5.80 5.80 Total: -1.00 -32.96 384.69 -8.81 -41.77 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -6.63 Total: 12.80 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -2.43 Total: 0.55 kcal Atomic # 7 Polarization: -58.93 SS G_CDS: -0.19 Total: -59.12 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -0.33 Total: -19.01 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.96 -8.81 -41.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328174810.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.500 kcal (2) G-P(sol) polarization free energy of solvation -32.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds