Wall clock time and date at job start Tue Mar 31 2020 18:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.46698 * 2 1 4 4 C 1.38630 * 120.46999 * 266.21426 * 3 2 1 5 5 C 1.38586 * 118.49332 * 180.27002 * 4 3 2 6 6 C 1.38606 * 119.34558 * 359.74756 * 5 4 3 7 7 N 1.31494 * 120.90282 * 359.97438 * 6 5 4 8 8 C 1.32746 * 121.64275 * 0.02667 * 7 6 5 9 9 C 1.48173 * 119.72102 * 179.97438 * 8 7 6 10 10 O 1.21513 * 119.99395 * 255.79096 * 9 8 7 11 11 N 1.34771 * 120.00118 * 75.79614 * 9 8 7 12 12 C 1.46931 * 120.62994 * 355.00386 * 11 9 8 13 13 C 1.53195 * 108.77328 * 233.58841 * 12 11 9 14 14 C 1.53032 * 109.31450 * 305.36586 * 13 12 11 15 15 O 1.42903 * 109.45909 * 301.35637 * 14 13 12 16 16 C 1.53000 * 109.46235 * 181.38579 * 14 13 12 17 17 N 1.46499 * 109.47251 * 184.99874 * 16 14 13 18 18 C 1.36939 * 119.99757 * 180.02562 * 17 16 14 19 19 H 1.07993 * 120.00432 * 359.97438 * 18 17 16 20 20 C 1.38812 * 119.99632 * 180.02562 * 18 17 16 21 21 N 1.31617 * 120.00517 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99969 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47224 * 89.99836 * 22 20 18 24 24 H 1.48503 * 109.47377 * 209.99959 * 22 20 18 25 25 H 1.48499 * 109.46902 * 330.00169 * 22 20 18 26 26 C 1.53040 * 109.53933 * 61.36454 * 14 13 12 27 27 C 1.46925 * 120.63194 * 174.98191 * 11 9 8 28 28 H 1.09003 * 109.47170 * 60.00624 * 1 2 3 29 29 H 1.09006 * 109.46936 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47408 * 299.99957 * 1 2 3 31 31 H 1.08996 * 109.46929 * 239.99841 * 2 1 3 32 32 H 1.09003 * 109.46667 * 119.99535 * 2 1 3 33 33 H 1.08007 * 120.76031 * 0.02562 * 4 3 2 34 34 H 1.07990 * 120.32985 * 179.72896 * 5 4 3 35 35 H 1.07998 * 119.54481 * 180.02562 * 6 5 4 36 36 H 1.08998 * 109.58818 * 113.80004 * 12 11 9 37 37 H 1.08996 * 109.58851 * 353.37246 * 12 11 9 38 38 H 1.09006 * 109.49746 * 185.40880 * 13 12 11 39 39 H 1.09002 * 109.49617 * 65.31869 * 13 12 11 40 40 H 0.96698 * 114.00166 * 180.02562 * 15 14 13 41 41 H 1.09001 * 109.47072 * 305.00333 * 16 14 13 42 42 H 1.09006 * 109.47095 * 64.99645 * 16 14 13 43 43 H 0.96994 * 120.00147 * 359.97438 * 17 16 14 44 44 H 0.96993 * 120.00581 * 179.97438 * 21 20 18 45 45 H 1.09001 * 109.49926 * 58.59020 * 26 14 13 46 46 H 1.09001 * 109.49750 * 178.68487 * 26 14 13 47 47 H 1.08994 * 109.58980 * 246.19596 * 27 11 9 48 48 H 1.08992 * 109.58632 * 6.62778 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.3409 2.0573 -1.1922 5 6 2.8049 3.3623 -1.1442 6 6 2.9408 3.9901 0.0841 7 7 2.6354 3.3646 1.1997 8 6 2.1879 2.1149 1.1973 9 6 1.8571 1.4507 2.4799 10 8 2.6123 0.6212 2.9469 11 7 0.7186 1.7665 3.1283 12 6 -0.1502 2.8435 2.6342 13 6 -0.4003 3.8369 3.7734 14 6 -0.9564 3.0870 4.9859 15 8 -2.1681 2.4234 4.6206 16 6 -1.2399 4.0810 6.1140 17 7 -1.6588 3.3519 7.3136 18 6 -1.9682 4.0371 8.4581 19 1 -1.9031 5.1149 8.4766 20 6 -2.3647 3.3461 9.5949 21 7 -2.4436 2.0325 9.5726 22 14 -2.7861 4.2807 11.1565 23 1 -4.2329 4.6157 11.1577 24 1 -2.4722 3.4376 12.3380 25 1 -1.9883 5.5318 11.2151 26 6 0.0670 2.0536 5.4622 27 6 0.3223 1.0400 4.3423 28 1 -0.3634 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.2262 1.5465 -2.1369 34 1 3.0584 3.8848 -2.0546 35 1 3.3017 5.0072 0.1252 36 1 -1.0992 2.4236 2.3007 37 1 0.3374 3.3547 1.8042 38 1 -1.1198 4.5887 3.4490 39 1 0.5370 4.3228 4.0446 40 1 -2.5777 1.9269 5.3422 41 1 -0.3364 4.6506 6.3319 42 1 -2.0336 4.7622 5.8071 43 1 -1.7177 2.3839 7.2969 44 1 -2.7203 1.5497 10.3671 45 1 0.9998 2.5563 5.7176 46 1 -0.3201 1.5361 6.3400 47 1 -0.5881 0.4730 4.1481 48 1 1.1216 0.3611 4.6392 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328174810.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:13 Heat of formation + Delta-G solvation = -62.401268 kcal Electronic energy + Delta-G solvation = -29707.548091 eV Core-core repulsion = 25761.533008 eV Total energy + Delta-G solvation = -3946.015083 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.10025 -40.76830 -39.52090 -36.91459 -35.81109 -35.72760 -33.63623 -33.26424 -32.32429 -31.99645 -30.77368 -28.36646 -26.20890 -25.57964 -25.19760 -24.18595 -23.45790 -22.45423 -21.64502 -20.49831 -19.47695 -18.76602 -17.95853 -17.59963 -17.23202 -16.74726 -16.66452 -16.03220 -15.96512 -15.74886 -15.65988 -15.13532 -14.99420 -14.84088 -14.77625 -14.58140 -14.44562 -14.16615 -14.09442 -13.69662 -13.56322 -13.24692 -13.11418 -13.00534 -12.81236 -12.75335 -12.37803 -12.36163 -12.28591 -12.11644 -11.99130 -11.95822 -11.47284 -11.26874 -10.98895 -10.80417 -10.76660 -10.44037 -9.97059 -9.77914 -9.03840 -7.97785 -5.26457 -0.12462 0.26268 1.30537 1.47059 1.47873 1.56267 1.78909 2.53882 2.67705 3.07114 3.23518 3.39195 3.53426 3.61520 3.69450 3.77873 3.83890 3.95211 3.96967 4.06154 4.17760 4.24852 4.27409 4.33491 4.37400 4.43273 4.48889 4.54601 4.65736 4.71762 4.78036 4.80420 4.84028 4.92196 4.96588 5.00196 5.04140 5.08882 5.14138 5.24865 5.27316 5.30658 5.41668 5.48144 5.66664 6.19858 6.24046 6.70500 6.79827 6.91461 7.31770 8.02698 8.27778 9.25025 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.023717 B = 0.002673 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.294620 B =10470.932792 C =10840.632596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 C -0.102 4.102 4 C -0.072 4.072 5 C -0.140 4.140 6 C 0.085 3.915 7 N -0.488 5.488 8 C 0.068 3.932 9 C 0.578 3.422 10 O -0.575 6.575 11 N -0.588 5.588 12 C 0.126 3.874 13 C -0.110 4.110 14 C 0.142 3.858 15 O -0.558 6.558 16 C 0.129 3.871 17 N -0.738 5.738 18 C -0.247 4.247 19 H 0.072 0.928 20 C -0.069 4.069 21 N -0.965 5.965 22 Si 0.971 3.029 23 H -0.286 1.286 24 H -0.295 1.295 25 H -0.273 1.273 26 C -0.146 4.146 27 C 0.124 3.876 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.038 0.962 31 H 0.105 0.895 32 H 0.053 0.947 33 H 0.175 0.825 34 H 0.180 0.820 35 H 0.187 0.813 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.079 0.921 40 H 0.383 0.617 41 H 0.023 0.977 42 H 0.028 0.972 43 H 0.377 0.623 44 H 0.252 0.748 45 H 0.060 0.940 46 H 0.072 0.928 47 H 0.086 0.914 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.711 0.759 -28.651 29.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.129 4.129 3 C -0.105 4.105 4 C -0.097 4.097 5 C -0.159 4.159 6 C -0.074 4.074 7 N -0.199 5.199 8 C -0.069 4.069 9 C 0.365 3.635 10 O -0.454 6.454 11 N -0.319 5.319 12 C 0.004 3.996 13 C -0.148 4.148 14 C 0.100 3.900 15 O -0.365 6.365 16 C 0.002 3.998 17 N -0.383 5.383 18 C -0.379 4.379 19 H 0.090 0.910 20 C -0.262 4.262 21 N -0.615 5.615 22 Si 0.800 3.200 23 H -0.213 1.213 24 H -0.222 1.222 25 H -0.198 1.198 26 C -0.185 4.185 27 C 0.001 3.999 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.057 0.943 31 H 0.123 0.877 32 H 0.071 0.929 33 H 0.192 0.808 34 H 0.198 0.802 35 H 0.204 0.796 36 H 0.102 0.898 37 H 0.108 0.892 38 H 0.116 0.884 39 H 0.098 0.902 40 H 0.231 0.769 41 H 0.041 0.959 42 H 0.046 0.954 43 H 0.211 0.789 44 H 0.061 0.939 45 H 0.079 0.921 46 H 0.091 0.909 47 H 0.104 0.896 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.293 1.166 -28.043 29.267 hybrid contribution -0.358 -0.611 1.542 1.697 sum 7.935 0.555 -26.501 27.669 Atomic orbital electron populations 1.21739 0.93315 1.02857 1.02189 1.20644 0.97248 0.91121 1.03855 1.20975 0.98775 0.97950 0.92784 1.21906 0.94819 0.94997 0.97992 1.22768 0.97387 0.95228 1.00496 1.23402 0.95696 1.01036 0.87264 1.67609 1.10640 1.07827 1.33782 1.20619 1.01433 0.92090 0.92799 1.18400 0.80437 0.81127 0.83528 1.90750 1.50113 1.36631 1.67924 1.48074 1.21953 1.35472 1.26428 1.21661 0.94338 0.87206 0.96362 1.21806 1.01679 0.97837 0.93527 1.21177 0.84183 0.91027 0.93576 1.86347 1.39037 1.69640 1.41515 1.21446 0.97038 0.94516 0.86815 1.42454 1.81351 1.05909 1.08544 1.19558 1.36604 0.91609 0.90129 0.90997 1.25498 1.03115 0.96444 1.01164 1.69768 1.55505 1.06619 1.29599 0.85180 0.77908 0.77605 0.79284 1.21278 1.22202 1.19766 1.22382 0.99846 0.98105 0.98137 1.21509 1.00978 0.94051 0.83315 0.90660 0.91135 0.94267 0.87683 0.92857 0.80754 0.80237 0.79594 0.89825 0.89217 0.88424 0.90230 0.76860 0.95866 0.95406 0.78936 0.93893 0.92086 0.90914 0.89585 0.90345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.89 71.98 0.71 -1.51 16 2 C -0.09 -1.57 5.62 29.85 0.17 -1.40 16 3 C -0.10 -1.92 5.18 -19.52 -0.10 -2.02 16 4 C -0.07 -0.80 9.84 22.45 0.22 -0.58 16 5 C -0.14 -1.29 10.12 22.44 0.23 -1.06 16 6 C 0.09 1.26 11.18 84.83 0.95 2.21 16 7 N -0.49 -11.62 9.54 -184.91 -1.76 -13.39 16 8 C 0.07 1.73 4.87 41.90 0.20 1.94 16 9 C 0.58 18.07 6.08 86.88 0.53 18.60 16 10 O -0.57 -22.10 15.86 -3.75 -0.06 -22.16 16 11 N -0.59 -16.81 2.97 -821.95 -2.44 -19.25 16 12 C 0.13 3.09 6.08 86.36 0.53 3.62 16 13 C -0.11 -2.92 5.11 30.67 0.16 -2.77 16 14 C 0.14 4.55 0.71 -10.77 -0.01 4.55 16 15 O -0.56 -17.82 11.70 -148.98 -1.74 -19.56 16 16 C 0.13 5.12 5.43 86.38 0.47 5.59 16 17 N -0.74 -36.23 5.07 -343.45 -1.74 -37.97 16 18 C -0.25 -13.67 9.99 84.03 0.84 -12.83 16 19 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 20 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 21 N -0.96 -57.71 13.06 21.65 0.28 -57.42 16 22 Si 0.97 45.98 29.55 68.60 2.03 48.01 16 23 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 24 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 25 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 26 C -0.15 -4.91 4.88 30.67 0.15 -4.76 16 27 C 0.12 3.76 6.20 86.36 0.54 4.30 16 28 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 30 H 0.04 0.76 8.09 -2.39 -0.02 0.74 16 31 H 0.10 1.20 8.07 -2.39 -0.02 1.19 16 32 H 0.05 1.26 6.76 -2.39 -0.02 1.25 16 33 H 0.18 0.70 8.06 -2.91 -0.02 0.67 16 34 H 0.18 0.21 8.06 -2.92 -0.02 0.19 16 35 H 0.19 1.61 8.06 -2.91 -0.02 1.59 16 36 H 0.08 1.97 7.81 -2.39 -0.02 1.95 16 37 H 0.09 2.03 5.82 -2.39 -0.01 2.02 16 38 H 0.10 2.32 8.14 -2.38 -0.02 2.30 16 39 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.38 12.52 8.19 -74.06 -0.61 11.91 16 41 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 43 H 0.38 19.05 5.55 -92.71 -0.51 18.54 16 44 H 0.25 14.70 8.31 -92.71 -0.77 13.92 16 45 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 46 H 0.07 2.75 6.53 -2.39 -0.02 2.73 16 47 H 0.09 2.42 7.81 -2.39 -0.02 2.41 16 48 H 0.08 2.59 7.00 -2.39 -0.02 2.58 16 Total: -1.00 -73.40 384.69 0.46 -72.94 By element: Atomic # 1 Polarization: 38.56 SS G_CDS: -0.14 Total: 38.42 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: 6.04 Total: 10.39 kcal Atomic # 7 Polarization: -122.37 SS G_CDS: -5.66 Total: -128.03 kcal Atomic # 8 Polarization: -39.92 SS G_CDS: -1.80 Total: -41.72 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -73.40 0.46 -72.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328174810.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.538 kcal (2) G-P(sol) polarization free energy of solvation -73.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds