Wall clock time and date at job start Tue Mar 31 2020 18:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50705 * 109.46990 * 2 1 4 4 C 1.38015 * 119.51038 * 125.26019 * 3 2 1 5 5 C 1.39926 * 119.13075 * 180.25176 * 4 3 2 6 6 C 1.48164 * 120.89109 * 179.77627 * 5 4 3 7 7 O 1.21515 * 119.99886 * 187.28788 * 6 5 4 8 8 N 1.34770 * 120.00092 * 7.28413 * 6 5 4 9 9 C 1.47020 * 125.65114 * 355.11520 * 8 6 5 10 10 C 1.54373 * 107.29196 * 178.94125 * 9 8 6 11 11 C 1.55150 * 102.91839 * 337.86241 * 10 9 8 12 12 H 1.09001 * 111.00235 * 277.35789 * 11 10 9 13 13 C 1.52996 * 111.00733 * 153.54659 * 11 10 9 14 14 C 1.53000 * 109.47777 * 178.17719 * 13 11 10 15 15 N 1.46493 * 109.47681 * 180.02562 * 14 13 11 16 16 C 1.36929 * 120.00490 * 180.02562 * 15 14 13 17 17 H 1.08007 * 119.99905 * 359.97438 * 16 15 14 18 18 C 1.38814 * 120.00387 * 179.97438 * 16 15 14 19 19 N 1.31619 * 119.99822 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99860 * 180.27291 * 18 16 15 21 21 H 1.48504 * 109.46895 * 179.72456 * 20 18 16 22 22 H 1.48501 * 109.47258 * 299.72394 * 20 18 16 23 23 H 1.48503 * 109.47108 * 59.72962 * 20 18 16 24 24 C 1.47429 * 125.64929 * 175.15144 * 8 6 5 25 25 C 1.39608 * 118.21554 * 359.50066 * 5 4 3 26 26 C 1.38851 * 118.95056 * 0.25029 * 25 5 4 27 27 O 1.35683 * 119.62141 * 179.97438 * 26 25 5 28 28 N 1.31878 * 119.51358 * 305.00457 * 3 2 1 29 29 H 1.09001 * 109.47605 * 59.99922 * 1 2 3 30 30 H 1.09001 * 109.47332 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47103 * 300.00058 * 1 2 3 32 32 H 1.08999 * 109.47043 * 240.00712 * 2 1 3 33 33 H 1.08995 * 109.47325 * 120.00420 * 2 1 3 34 34 H 1.08005 * 120.43613 * 0.02562 * 4 3 2 35 35 H 1.09004 * 109.87728 * 298.38975 * 9 8 6 36 36 H 1.08998 * 109.88583 * 59.55225 * 9 8 6 37 37 H 1.08994 * 110.75455 * 219.48868 * 10 9 8 38 38 H 1.09000 * 110.70065 * 96.20206 * 10 9 8 39 39 H 1.09011 * 109.47257 * 58.17653 * 13 11 10 40 40 H 1.08997 * 109.47277 * 298.18104 * 13 11 10 41 41 H 1.09002 * 109.46924 * 59.99381 * 14 13 11 42 42 H 1.09005 * 109.46872 * 300.00241 * 14 13 11 43 43 H 0.97008 * 119.99864 * 359.97438 * 15 14 13 44 44 H 0.97003 * 119.99727 * 179.97438 * 19 18 16 45 45 H 1.09005 * 110.36609 * 85.25833 * 24 8 6 46 46 H 1.08999 * 110.45993 * 322.98381 * 24 8 6 47 47 H 1.08003 * 120.52552 * 180.23144 * 25 5 4 48 48 H 0.96692 * 114.00511 * 90.00603 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9126 1.8307 0.9807 5 6 3.3698 3.1532 0.9763 6 6 4.3115 3.6360 2.0133 7 8 4.5951 4.8160 2.0744 8 7 4.8534 2.7665 2.8889 9 6 4.5228 1.3377 2.9936 10 6 5.4062 0.7431 4.1112 11 6 6.5876 1.7457 4.1900 12 1 7.3360 1.5283 3.4280 13 6 7.2144 1.7462 5.5857 14 6 8.4015 2.7111 5.6114 15 7 9.0021 2.7110 6.9476 16 6 10.0864 3.5046 7.2110 17 1 10.4993 4.1303 6.4335 18 6 10.6552 3.5049 8.4773 19 7 10.1518 2.7428 9.4250 20 14 12.1297 4.5933 8.8386 21 1 12.5406 4.4161 10.2546 22 1 13.2546 4.2153 7.9458 23 1 11.7662 6.0137 8.6027 24 6 5.8753 3.0906 3.9008 25 6 2.9195 4.0038 -0.0350 26 6 2.0377 3.5089 -0.9865 27 8 1.5910 4.3239 -1.9751 28 7 1.6281 2.2528 -0.9400 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.2415 1.1408 1.7438 35 1 3.4700 1.2187 3.2498 36 1 4.7353 0.8378 2.0486 37 1 5.7608 -0.2501 3.8360 38 1 4.8633 0.7119 5.0559 39 1 7.5580 0.7409 5.8301 40 1 6.4718 2.0642 6.3174 41 1 8.0581 3.7163 5.3670 42 1 9.1442 2.3930 4.8797 43 1 8.6311 2.1493 7.6461 44 1 10.5494 2.7427 10.3097 45 1 5.4044 3.4729 4.8066 46 1 6.5845 3.8185 3.5067 47 1 3.2514 5.0308 -0.0763 48 1 2.1436 4.3193 -2.7685 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733656652.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:43 Heat of formation + Delta-G solvation = -16.031465 kcal Electronic energy + Delta-G solvation = -27897.506491 eV Core-core repulsion = 23953.502154 eV Total energy + Delta-G solvation = -3944.004337 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -41.41326 -40.04142 -38.02088 -37.71811 -35.28974 -34.35593 -33.39927 -32.41869 -31.08995 -30.16387 -29.49088 -27.47076 -25.72305 -24.60490 -23.89333 -22.97264 -22.41994 -21.36156 -20.27975 -20.00541 -19.01157 -17.68625 -17.14618 -16.80378 -16.42900 -16.33889 -15.79121 -15.40804 -15.17990 -14.77076 -14.58859 -14.46369 -14.18085 -13.79974 -13.49888 -13.44738 -13.21296 -13.09691 -12.90463 -12.73229 -12.46993 -12.24709 -12.11299 -11.83700 -11.74082 -11.50610 -11.26701 -11.12280 -10.84029 -10.72885 -10.58884 -10.45796 -10.40957 -10.28686 -10.02744 -9.78316 -9.67846 -9.29529 -8.94102 -8.86643 -6.92560 -5.76606 -3.05263 0.25754 0.50413 2.46209 2.51857 3.06094 3.32533 3.44813 3.48929 3.50101 3.84370 3.99722 4.21789 4.37148 4.49802 4.55426 4.57482 4.64335 4.70357 4.82111 4.88687 4.90540 4.96324 5.02345 5.23714 5.29950 5.31013 5.45416 5.46524 5.51912 5.53378 5.58645 5.64960 5.66828 5.73509 5.80528 5.83415 5.93571 6.00209 6.03705 6.18312 6.31695 6.33600 6.80884 6.84760 7.01305 7.14125 7.42527 7.69953 7.77128 8.42620 9.53542 10.11414 10.45753 11.46282 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.023217 B = 0.001976 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.709505 B =14165.865096 C =15178.164768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.073 4.073 3 C 0.151 3.849 4 C -0.185 4.185 5 C -0.062 4.062 6 C 0.570 3.430 7 O -0.524 6.524 8 N -0.607 5.607 9 C 0.086 3.914 10 C -0.131 4.131 11 C -0.094 4.094 12 H 0.087 0.913 13 C -0.115 4.115 14 C 0.151 3.849 15 N -0.734 5.734 16 C -0.240 4.240 17 H 0.070 0.930 18 C -0.015 4.015 19 N -0.935 5.935 20 Si 0.908 3.092 21 H -0.291 1.291 22 H -0.286 1.286 23 H -0.286 1.286 24 C 0.110 3.890 25 C -0.136 4.136 26 C 0.312 3.688 27 O -0.478 6.478 28 N -0.487 5.487 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.173 0.827 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.019 0.981 42 H 0.018 0.982 43 H 0.383 0.617 44 H 0.255 0.745 45 H 0.077 0.923 46 H 0.085 0.915 47 H 0.153 0.847 48 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.618 -8.501 -21.936 30.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 C 0.014 3.986 4 C -0.204 4.204 5 C -0.073 4.073 6 C 0.358 3.642 7 O -0.400 6.400 8 N -0.341 5.341 9 C -0.036 4.036 10 C -0.169 4.169 11 C -0.114 4.114 12 H 0.105 0.895 13 C -0.153 4.153 14 C 0.023 3.977 15 N -0.378 5.378 16 C -0.371 4.371 17 H 0.088 0.912 18 C -0.211 4.211 19 N -0.583 5.583 20 Si 0.739 3.261 21 H -0.217 1.217 22 H -0.213 1.213 23 H -0.212 1.212 24 C -0.012 4.012 25 C -0.158 4.158 26 C 0.133 3.867 27 O -0.285 6.285 28 N -0.207 5.207 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.190 0.810 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.037 0.963 42 H 0.036 0.964 43 H 0.217 0.783 44 H 0.065 0.935 45 H 0.095 0.905 46 H 0.103 0.897 47 H 0.171 0.829 48 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -20.372 -7.768 -22.226 31.134 hybrid contribution 1.563 0.761 0.656 1.859 sum -18.808 -7.007 -21.570 29.464 Atomic orbital electron populations 1.21688 0.93806 1.02008 1.02837 1.20549 0.97342 0.89624 1.03620 1.21037 0.92493 0.95750 0.89363 1.23501 0.98905 0.96631 1.01370 1.20189 0.97393 0.94080 0.95597 1.17758 0.80648 0.85173 0.80618 1.90824 1.61190 1.15658 1.72374 1.48371 1.41416 1.09584 1.34716 1.22616 0.99600 0.81422 0.99950 1.22818 0.96255 0.99378 0.98428 1.22359 0.96331 0.93243 0.99431 0.89484 1.21689 0.98497 1.01224 0.93880 1.20682 0.92123 0.95711 0.89169 1.42348 1.35454 1.52350 1.07661 1.19195 1.05026 1.17368 0.95517 0.91247 1.24750 0.99913 1.00270 0.96159 1.69649 1.43031 1.42735 1.02914 0.86254 0.82605 0.80273 0.76983 1.21670 1.21269 1.21233 1.22507 0.89513 0.98204 0.90937 1.22234 0.96502 1.02157 0.94897 1.18933 0.90907 0.86437 0.90388 1.84807 1.54832 1.61383 1.27496 1.66750 1.24303 1.03679 1.25984 0.91540 0.92004 0.92771 0.89560 0.89793 0.81000 0.90356 0.90284 0.89464 0.89852 0.91136 0.91489 0.96307 0.96447 0.78316 0.93477 0.90489 0.89698 0.82892 0.73995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.77 37.16 0.36 -0.47 16 2 C -0.07 -0.39 6.33 -27.88 -0.18 -0.57 16 3 C 0.15 1.24 6.17 -82.65 -0.51 0.73 16 4 C -0.18 -1.49 8.27 -39.03 -0.32 -1.81 16 5 C -0.06 -0.65 5.90 -104.68 -0.62 -1.27 16 6 C 0.57 7.35 7.83 -12.19 -0.10 7.25 16 7 O -0.52 -8.71 16.76 5.35 0.09 -8.62 16 8 N -0.61 -6.69 3.33 -171.76 -0.57 -7.27 16 9 C 0.09 0.62 4.88 -3.04 -0.01 0.60 16 10 C -0.13 -0.99 6.42 -24.87 -0.16 -1.15 16 11 C -0.09 -1.02 3.04 -88.48 -0.27 -1.29 16 12 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 13 C -0.11 -1.63 4.84 -26.73 -0.13 -1.76 16 14 C 0.15 2.92 6.14 -4.05 -0.02 2.90 16 15 N -0.73 -18.54 5.60 -59.91 -0.34 -18.88 16 16 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 17 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 18 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 19 N -0.93 -28.31 13.06 55.49 0.72 -27.59 16 20 Si 0.91 22.58 29.55 -169.99 -5.02 17.55 16 21 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 C 0.11 1.35 5.69 -2.53 -0.01 1.34 16 25 C -0.14 -1.42 9.61 -38.84 -0.37 -1.79 16 26 C 0.31 3.11 7.74 -17.17 -0.13 2.97 16 27 O -0.48 -4.01 13.56 -18.75 -0.25 -4.27 16 28 N -0.49 -4.88 9.87 -9.60 -0.09 -4.98 16 29 H 0.07 0.48 7.94 -51.93 -0.41 0.06 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.27 7.86 -51.93 -0.41 -0.14 16 34 H 0.17 0.97 2.84 -52.85 -0.15 0.82 16 35 H 0.08 0.44 6.83 -51.93 -0.35 0.08 16 36 H 0.08 0.44 6.68 -51.93 -0.35 0.09 16 37 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.62 8.04 -51.93 -0.42 0.21 16 39 H 0.07 1.00 8.14 -51.92 -0.42 0.58 16 40 H 0.07 0.97 8.03 -51.93 -0.42 0.56 16 41 H 0.02 0.38 7.59 -51.93 -0.39 -0.02 16 42 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.38 10.08 7.67 -40.82 -0.31 9.77 16 44 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 45 H 0.08 1.00 7.96 -51.93 -0.41 0.59 16 46 H 0.08 1.18 8.05 -51.93 -0.42 0.77 16 47 H 0.15 1.59 7.76 -52.48 -0.41 1.18 16 48 H 0.40 1.30 9.06 45.56 0.41 1.71 16 LS Contribution 390.60 15.07 5.89 5.89 Total: -1.00 -35.96 390.60 -8.85 -44.81 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -6.54 Total: 5.13 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -2.72 Total: -1.78 kcal Atomic # 7 Polarization: -58.43 SS G_CDS: -0.28 Total: -58.71 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: -0.16 Total: -12.88 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.96 -8.85 -44.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733656652.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.780 kcal (2) G-P(sol) polarization free energy of solvation -35.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds