Wall clock time and date at job start Tue Mar 31 2020 18:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50705 * 109.46990 * 2 1 4 4 C 1.38015 * 119.51038 * 125.26019 * 3 2 1 5 5 C 1.39926 * 119.13075 * 180.25176 * 4 3 2 6 6 C 1.48164 * 120.89109 * 179.77627 * 5 4 3 7 7 O 1.21515 * 119.99886 * 187.28788 * 6 5 4 8 8 N 1.34770 * 120.00092 * 7.28413 * 6 5 4 9 9 C 1.47020 * 125.65114 * 355.11520 * 8 6 5 10 10 C 1.54373 * 107.29196 * 178.94125 * 9 8 6 11 11 C 1.55150 * 102.91839 * 337.86241 * 10 9 8 12 12 H 1.09001 * 111.00235 * 277.35789 * 11 10 9 13 13 C 1.52996 * 111.00733 * 153.54659 * 11 10 9 14 14 C 1.53000 * 109.47777 * 178.17719 * 13 11 10 15 15 N 1.46493 * 109.47681 * 180.02562 * 14 13 11 16 16 C 1.36929 * 120.00490 * 180.02562 * 15 14 13 17 17 H 1.08007 * 119.99905 * 359.97438 * 16 15 14 18 18 C 1.38814 * 120.00387 * 179.97438 * 16 15 14 19 19 N 1.31619 * 119.99822 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99860 * 180.27291 * 18 16 15 21 21 H 1.48504 * 109.46895 * 179.72456 * 20 18 16 22 22 H 1.48501 * 109.47258 * 299.72394 * 20 18 16 23 23 H 1.48503 * 109.47108 * 59.72962 * 20 18 16 24 24 C 1.47429 * 125.64929 * 175.15144 * 8 6 5 25 25 C 1.39608 * 118.21554 * 359.50066 * 5 4 3 26 26 C 1.38851 * 118.95056 * 0.25029 * 25 5 4 27 27 O 1.35683 * 119.62141 * 179.97438 * 26 25 5 28 28 N 1.31878 * 119.51358 * 305.00457 * 3 2 1 29 29 H 1.09001 * 109.47605 * 59.99922 * 1 2 3 30 30 H 1.09001 * 109.47332 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47103 * 300.00058 * 1 2 3 32 32 H 1.08999 * 109.47043 * 240.00712 * 2 1 3 33 33 H 1.08995 * 109.47325 * 120.00420 * 2 1 3 34 34 H 1.08005 * 120.43613 * 0.02562 * 4 3 2 35 35 H 1.09004 * 109.87728 * 298.38975 * 9 8 6 36 36 H 1.08998 * 109.88583 * 59.55225 * 9 8 6 37 37 H 1.08994 * 110.75455 * 219.48868 * 10 9 8 38 38 H 1.09000 * 110.70065 * 96.20206 * 10 9 8 39 39 H 1.09011 * 109.47257 * 58.17653 * 13 11 10 40 40 H 1.08997 * 109.47277 * 298.18104 * 13 11 10 41 41 H 1.09002 * 109.46924 * 59.99381 * 14 13 11 42 42 H 1.09005 * 109.46872 * 300.00241 * 14 13 11 43 43 H 0.97008 * 119.99864 * 359.97438 * 15 14 13 44 44 H 0.97003 * 119.99727 * 179.97438 * 19 18 16 45 45 H 1.09005 * 110.36609 * 85.25833 * 24 8 6 46 46 H 1.08999 * 110.45993 * 322.98381 * 24 8 6 47 47 H 1.08003 * 120.52552 * 180.23144 * 25 5 4 48 48 H 0.96692 * 114.00511 * 90.00603 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9126 1.8307 0.9807 5 6 3.3698 3.1532 0.9763 6 6 4.3115 3.6360 2.0133 7 8 4.5951 4.8160 2.0744 8 7 4.8534 2.7665 2.8889 9 6 4.5228 1.3377 2.9936 10 6 5.4062 0.7431 4.1112 11 6 6.5876 1.7457 4.1900 12 1 7.3360 1.5283 3.4280 13 6 7.2144 1.7462 5.5857 14 6 8.4015 2.7111 5.6114 15 7 9.0021 2.7110 6.9476 16 6 10.0864 3.5046 7.2110 17 1 10.4993 4.1303 6.4335 18 6 10.6552 3.5049 8.4773 19 7 10.1518 2.7428 9.4250 20 14 12.1297 4.5933 8.8386 21 1 12.5406 4.4161 10.2546 22 1 13.2546 4.2153 7.9458 23 1 11.7662 6.0137 8.6027 24 6 5.8753 3.0906 3.9008 25 6 2.9195 4.0038 -0.0350 26 6 2.0377 3.5089 -0.9865 27 8 1.5910 4.3239 -1.9751 28 7 1.6281 2.2528 -0.9400 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.2415 1.1408 1.7438 35 1 3.4700 1.2187 3.2498 36 1 4.7353 0.8378 2.0486 37 1 5.7608 -0.2501 3.8360 38 1 4.8633 0.7119 5.0559 39 1 7.5580 0.7409 5.8301 40 1 6.4718 2.0642 6.3174 41 1 8.0581 3.7163 5.3670 42 1 9.1442 2.3930 4.8797 43 1 8.6311 2.1493 7.6461 44 1 10.5494 2.7427 10.3097 45 1 5.4044 3.4729 4.8066 46 1 6.5845 3.8185 3.5067 47 1 3.2514 5.0308 -0.0763 48 1 2.1436 4.3193 -2.7685 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733656652.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:41 Heat of formation + Delta-G solvation = -43.788261 kcal Electronic energy + Delta-G solvation = -27898.710116 eV Core-core repulsion = 23953.502154 eV Total energy + Delta-G solvation = -3945.207962 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -42.17306 -40.86287 -39.00891 -38.36597 -36.90616 -35.06920 -34.62145 -33.42993 -32.53954 -30.98164 -30.41355 -28.70603 -26.79348 -25.43950 -25.17650 -24.03727 -23.06427 -22.70163 -21.26788 -20.78649 -19.73111 -19.14940 -18.45497 -17.64426 -17.18425 -17.17926 -16.74057 -16.58124 -16.15329 -15.99236 -15.45282 -15.37245 -15.19217 -15.02506 -14.92478 -14.41789 -14.30860 -14.08894 -13.82464 -13.58954 -13.25568 -13.07808 -12.99248 -12.81793 -12.79787 -12.70888 -12.37773 -12.26488 -12.14136 -11.93910 -11.89682 -11.68556 -11.56982 -11.51074 -11.34976 -11.05210 -10.92454 -10.50066 -9.97556 -9.80015 -9.00778 -7.96792 -5.25371 -0.50906 -0.16448 1.46039 1.49086 1.55239 1.59700 1.64922 2.41554 2.54914 2.62465 3.08755 3.36441 3.39361 3.51595 3.57163 3.79689 3.83388 3.86312 4.12801 4.18430 4.21994 4.28334 4.31539 4.38487 4.45620 4.48415 4.49967 4.56748 4.70178 4.75947 4.80868 4.81806 4.84962 4.90667 4.94940 5.09579 5.11949 5.16459 5.23350 5.27942 5.33651 5.39212 5.46873 5.49531 5.49982 6.26445 6.26953 6.50731 6.78543 6.82547 7.32456 8.09381 8.32409 9.26350 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.023217 B = 0.001976 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.709505 B =14165.865096 C =15178.164768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.073 4.073 3 C 0.151 3.849 4 C -0.170 4.170 5 C -0.073 4.073 6 C 0.564 3.436 7 O -0.577 6.577 8 N -0.604 5.604 9 C 0.077 3.923 10 C -0.119 4.119 11 C -0.085 4.085 12 H 0.092 0.908 13 C -0.100 4.100 14 C 0.147 3.853 15 N -0.747 5.747 16 C -0.250 4.250 17 H 0.071 0.929 18 C -0.075 4.075 19 N -0.967 5.967 20 Si 0.973 3.027 21 H -0.292 1.292 22 H -0.277 1.277 23 H -0.281 1.281 24 C 0.107 3.893 25 C -0.151 4.151 26 C 0.309 3.691 27 O -0.488 6.488 28 N -0.502 5.502 29 H 0.045 0.955 30 H 0.080 0.920 31 H 0.047 0.953 32 H 0.096 0.904 33 H 0.116 0.884 34 H 0.202 0.798 35 H 0.105 0.895 36 H 0.107 0.893 37 H 0.117 0.883 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.063 0.937 41 H 0.011 0.989 42 H 0.019 0.981 43 H 0.375 0.625 44 H 0.252 0.748 45 H 0.065 0.935 46 H 0.058 0.942 47 H 0.142 0.858 48 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.347 -11.134 -22.844 32.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.110 4.110 3 C 0.012 3.988 4 C -0.189 4.189 5 C -0.084 4.084 6 C 0.354 3.646 7 O -0.458 6.458 8 N -0.335 5.335 9 C -0.043 4.043 10 C -0.157 4.157 11 C -0.105 4.105 12 H 0.111 0.889 13 C -0.138 4.138 14 C 0.020 3.980 15 N -0.390 5.390 16 C -0.382 4.382 17 H 0.089 0.911 18 C -0.268 4.268 19 N -0.618 5.618 20 Si 0.802 3.198 21 H -0.218 1.218 22 H -0.203 1.203 23 H -0.207 1.207 24 C -0.015 4.015 25 C -0.174 4.174 26 C 0.131 3.869 27 O -0.299 6.299 28 N -0.223 5.223 29 H 0.065 0.935 30 H 0.098 0.902 31 H 0.066 0.934 32 H 0.114 0.886 33 H 0.134 0.866 34 H 0.219 0.781 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.135 0.865 38 H 0.107 0.893 39 H 0.096 0.904 40 H 0.082 0.918 41 H 0.029 0.971 42 H 0.037 0.963 43 H 0.207 0.793 44 H 0.061 0.939 45 H 0.083 0.917 46 H 0.076 0.924 47 H 0.160 0.840 48 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -21.109 -10.431 -23.191 33.049 hybrid contribution 1.747 1.575 0.869 2.508 sum -19.362 -8.855 -22.322 30.847 Atomic orbital electron populations 1.21678 0.94271 1.02810 1.01534 1.20725 0.96828 0.87785 1.05698 1.21646 0.91781 0.96827 0.88497 1.23760 0.97929 0.95593 1.01612 1.20077 0.97708 0.95425 0.95191 1.18170 0.80670 0.84729 0.81046 1.90788 1.63192 1.17947 1.73868 1.48431 1.40372 1.11221 1.33513 1.23006 1.01133 0.78839 1.01362 1.22833 0.94340 0.99544 0.98985 1.22220 0.97554 0.93556 0.97136 0.88927 1.21527 0.96298 0.99853 0.96133 1.20886 0.93850 0.96848 0.86391 1.42581 1.35110 1.51755 1.09587 1.19588 1.05652 1.17276 0.95658 0.91089 1.25574 1.02971 1.02070 0.96170 1.69795 1.44497 1.44421 1.03057 0.85222 0.79465 0.78559 0.76584 1.21818 1.20271 1.20694 1.22398 0.89624 0.98734 0.90767 1.22214 0.97463 1.01957 0.95731 1.18952 0.90710 0.86684 0.90579 1.84751 1.55527 1.61311 1.28284 1.66857 1.24743 1.03756 1.26941 0.93549 0.90154 0.93402 0.88556 0.86579 0.78141 0.87726 0.87500 0.86515 0.89341 0.90397 0.91840 0.97094 0.96341 0.79257 0.93892 0.91654 0.92354 0.84035 0.71682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.77 71.98 0.70 -0.57 16 2 C -0.07 -0.50 6.33 29.85 0.19 -0.31 16 3 C 0.15 2.07 6.17 42.50 0.26 2.33 16 4 C -0.17 -2.23 8.27 22.63 0.19 -2.05 16 5 C -0.07 -1.50 5.90 -19.90 -0.12 -1.61 16 6 C 0.56 14.64 7.83 86.88 0.68 15.32 16 7 O -0.58 -20.37 16.76 -3.76 -0.06 -20.43 16 8 N -0.60 -12.53 3.33 -815.63 -2.71 -15.24 16 9 C 0.08 0.78 4.88 86.75 0.42 1.20 16 10 C -0.12 -1.30 6.42 31.80 0.20 -1.09 16 11 C -0.08 -1.67 3.04 -9.41 -0.03 -1.70 16 12 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 13 C -0.10 -2.74 4.84 30.59 0.15 -2.59 16 14 C 0.15 5.71 6.14 86.38 0.53 6.24 16 15 N -0.75 -38.18 5.60 -343.46 -1.92 -40.11 16 16 C -0.25 -14.24 9.99 84.04 0.84 -13.40 16 17 H 0.07 3.93 7.83 -2.91 -0.02 3.90 16 18 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 19 N -0.97 -59.24 13.06 21.65 0.28 -58.96 16 20 Si 0.97 46.64 29.55 68.60 2.03 48.67 16 21 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 22 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 23 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 24 C 0.11 2.63 5.69 86.85 0.49 3.12 16 25 C -0.15 -3.25 9.61 22.75 0.22 -3.03 16 26 C 0.31 6.08 7.74 84.78 0.66 6.74 16 27 O -0.49 -8.18 13.56 -90.01 -1.22 -9.41 16 28 N -0.50 -9.41 9.87 -297.17 -2.93 -12.35 16 29 H 0.05 0.59 7.94 -2.39 -0.02 0.57 16 30 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.12 0.08 7.86 -2.39 -0.02 0.06 16 34 H 0.20 1.26 2.84 -3.25 -0.01 1.25 16 35 H 0.11 0.61 6.83 -2.38 -0.02 0.60 16 36 H 0.11 0.59 6.68 -2.39 -0.02 0.57 16 37 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.09 0.94 8.04 -2.39 -0.02 0.92 16 39 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 40 H 0.06 1.79 8.03 -2.39 -0.02 1.77 16 41 H 0.01 0.45 7.59 -2.39 -0.02 0.43 16 42 H 0.02 0.72 8.14 -2.38 -0.02 0.71 16 43 H 0.38 20.03 7.67 -92.70 -0.71 19.31 16 44 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 45 H 0.07 1.74 7.96 -2.38 -0.02 1.72 16 46 H 0.06 1.72 8.05 -2.39 -0.02 1.70 16 47 H 0.14 3.24 7.76 -2.91 -0.02 3.22 16 48 H 0.42 2.65 9.06 -74.06 -0.67 1.98 16 Total: -1.00 -81.00 390.60 -1.07 -82.08 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: -0.39 Total: 21.06 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: 5.86 Total: 4.68 kcal Atomic # 7 Polarization: -119.37 SS G_CDS: -7.29 Total: -126.65 kcal Atomic # 8 Polarization: -28.56 SS G_CDS: -1.28 Total: -29.84 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -81.00 -1.07 -82.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733656652.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.289 kcal (2) G-P(sol) polarization free energy of solvation -81.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds