Wall clock time and date at job start Tue Mar 31 2020 17:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46930 * 2 1 4 4 C 1.52998 * 109.49719 * 54.45387 * 3 2 1 5 5 O 1.42900 * 109.47140 * 55.44240 * 4 3 2 6 6 C 1.53046 * 109.49621 * 174.51263 * 3 2 1 7 7 C 1.53044 * 109.53378 * 58.59104 * 6 3 2 8 8 C 1.53191 * 109.31691 * 61.36191 * 7 6 3 9 9 N 1.46930 * 108.77353 * 305.36808 * 8 7 6 10 10 S 1.65602 * 120.62782 * 233.58142 * 9 8 7 11 11 O 1.42096 * 104.27810 * 206.07252 * 10 9 8 12 12 O 1.42102 * 104.27987 * 333.93322 * 10 9 8 13 13 C 1.81405 * 104.44692 * 90.00036 * 10 9 8 14 14 C 1.53003 * 109.46884 * 180.02562 * 13 10 9 15 15 C 1.52994 * 109.47082 * 299.99799 * 14 13 10 16 16 C 1.53000 * 109.47263 * 59.99938 * 14 13 10 17 17 C 1.50703 * 109.46778 * 180.02562 * 14 13 10 18 18 H 1.07996 * 120.00054 * 359.97438 * 17 14 13 19 19 C 1.37873 * 119.99521 * 179.97438 * 17 14 13 20 20 N 1.31513 * 120.00762 * 359.97438 * 19 17 14 21 21 Si 1.86808 * 119.99777 * 180.02562 * 19 17 14 22 22 H 1.48505 * 109.46845 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47185 * 119.99618 * 21 19 17 24 24 H 1.48501 * 109.47068 * 239.99763 * 21 19 17 25 25 C 1.46923 * 118.74063 * 53.60556 * 9 8 7 26 26 H 1.09005 * 109.47095 * 175.18122 * 1 2 3 27 27 H 1.08994 * 109.47428 * 295.18019 * 1 2 3 28 28 H 1.09002 * 109.47301 * 55.18630 * 1 2 3 29 29 H 1.08999 * 109.47049 * 120.00115 * 2 1 3 30 30 H 1.09003 * 109.47039 * 240.00361 * 2 1 3 31 31 H 1.09000 * 109.47490 * 175.43853 * 4 3 2 32 32 H 1.08994 * 109.47054 * 295.44180 * 4 3 2 33 33 H 0.96708 * 114.00150 * 180.02562 * 5 4 3 34 34 H 1.08994 * 109.45775 * 178.60495 * 6 3 2 35 35 H 1.08992 * 109.46142 * 298.57047 * 6 3 2 36 36 H 1.09003 * 109.49767 * 181.31509 * 7 6 3 37 37 H 1.09000 * 109.50087 * 301.38046 * 7 6 3 38 38 H 1.09000 * 109.58721 * 65.15036 * 8 7 6 39 39 H 1.08994 * 109.59235 * 185.57792 * 8 7 6 40 40 H 1.09000 * 109.46850 * 300.00074 * 13 10 9 41 41 H 1.08995 * 109.46879 * 59.99861 * 13 10 9 42 42 H 1.09003 * 109.47500 * 60.00166 * 15 14 13 43 43 H 1.08998 * 109.47372 * 179.97438 * 15 14 13 44 44 H 1.09004 * 109.47773 * 300.00535 * 15 14 13 45 45 H 1.09003 * 109.46839 * 60.00005 * 16 14 13 46 46 H 1.08999 * 109.46815 * 179.97438 * 16 14 13 47 47 H 1.09002 * 109.47405 * 300.00127 * 16 14 13 48 48 H 0.96996 * 120.00716 * 180.02562 * 20 19 17 49 49 H 1.09002 * 109.58184 * 186.60396 * 25 9 8 50 50 H 1.09003 * 109.58661 * 66.18278 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4196 2.2034 1.1735 5 8 1.6977 1.5096 2.3914 6 6 3.5642 1.4454 0.1380 7 6 4.1840 0.6559 -1.0173 8 6 3.8173 1.3275 -2.3444 9 7 2.3559 1.4597 -2.4195 10 16 1.5216 0.8728 -3.7240 11 8 0.3469 1.6705 -3.7765 12 8 2.4685 0.8924 -4.7834 13 6 1.1119 -0.8346 -3.2682 14 6 0.3307 -1.4930 -4.4072 15 6 -0.9587 -0.7095 -4.6609 16 6 1.1845 -1.4949 -5.6768 17 6 -0.0103 -2.9112 -4.0283 18 1 0.2996 -3.3038 -3.0711 19 6 -0.7178 -3.7074 -4.9037 20 7 -1.0956 -3.2293 -6.0691 21 14 -1.1411 -5.4652 -4.4338 22 1 -0.6062 -5.7580 -3.0797 23 1 -2.6163 -5.6354 -4.4312 24 1 -0.5367 -6.3997 -5.4170 25 6 1.6489 2.1231 -1.3155 26 1 -0.3633 -1.0241 -0.0863 27 1 -0.3634 0.4372 0.9299 28 1 -0.3634 0.5867 -0.8437 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8442 3.2061 1.2215 32 1 0.3410 2.2719 1.0325 33 1 1.3332 1.9361 3.1791 34 1 3.9290 2.4722 0.1130 35 1 3.8440 0.9837 1.0848 36 1 5.2682 0.6386 -0.9057 37 1 3.8010 -0.3646 -1.0075 38 1 4.2765 2.3148 -2.3934 39 1 4.1720 0.7158 -3.1738 40 1 2.0305 -1.3929 -3.0879 41 1 0.5040 -0.8332 -2.3635 42 1 -0.7125 0.3165 -4.9347 43 1 -1.5150 -1.1782 -5.4726 44 1 -1.5670 -0.7080 -3.7564 45 1 2.1031 -2.0532 -5.4961 46 1 0.6281 -1.9644 -6.4881 47 1 1.4307 -0.4690 -5.9507 48 1 -1.5937 -3.7894 -6.6848 49 1 0.5729 2.0362 -1.4662 50 1 1.9313 3.1753 -1.2806 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331314388.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:09 Heat of formation + Delta-G solvation = -133.616311 kcal Electronic energy + Delta-G solvation = -30354.011479 eV Core-core repulsion = 26508.059480 eV Total energy + Delta-G solvation = -3845.951999 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.181 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.92314 -36.72794 -36.57205 -36.27658 -35.31387 -33.79563 -32.13616 -31.65515 -30.00019 -26.66486 -26.07669 -25.71255 -25.22305 -24.60235 -23.57954 -21.77822 -19.48158 -18.80200 -18.05081 -17.53366 -17.40632 -16.05640 -15.78501 -15.55970 -15.37294 -14.99036 -14.74741 -14.50645 -14.27917 -14.10819 -13.47293 -13.12145 -13.10321 -12.87557 -12.83083 -12.48865 -12.31964 -12.17856 -12.03893 -11.84661 -11.59615 -11.42855 -11.14937 -11.08942 -11.06629 -10.92022 -10.84978 -10.68733 -10.65573 -10.37909 -10.33437 -10.26310 -10.14889 -10.05618 -10.00462 -9.64291 -9.53334 -8.87305 -8.58147 -8.39763 -6.02612 -4.14238 0.83874 3.07047 3.25212 3.33824 3.36507 4.02628 4.34106 4.41163 4.46995 4.63197 4.72164 4.77844 5.04163 5.05633 5.12069 5.22603 5.23048 5.31006 5.38627 5.43502 5.51236 5.60900 5.66410 5.67302 5.73182 5.77847 5.79860 5.91484 6.00736 6.11309 6.19671 6.24096 6.32193 6.34779 6.40851 6.53861 6.70789 6.72292 6.80324 6.91486 7.04604 7.32072 7.44637 7.50944 7.68867 7.98346 8.10590 8.33985 8.84576 9.51190 10.98763 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014773 B = 0.004623 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.849313 B = 6055.103242 C = 6927.409009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.115 4.115 3 C -0.072 4.072 4 C 0.086 3.914 5 O -0.566 6.566 6 C -0.099 4.099 7 C -0.140 4.140 8 C 0.121 3.879 9 N -1.004 6.004 10 S 2.590 3.410 11 O -0.963 6.963 12 O -0.962 6.962 13 C -0.585 4.585 14 C 0.083 3.917 15 C -0.163 4.163 16 C -0.163 4.163 17 C -0.498 4.498 18 H 0.059 0.941 19 C 0.065 3.935 20 N -0.884 5.884 21 Si 0.894 3.106 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.130 3.870 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.044 0.956 32 H 0.052 0.948 33 H 0.375 0.625 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.091 0.909 40 H 0.116 0.884 41 H 0.122 0.878 42 H 0.026 0.974 43 H 0.095 0.905 44 H 0.036 0.964 45 H 0.036 0.964 46 H 0.095 0.905 47 H 0.026 0.974 48 H 0.261 0.739 49 H 0.094 0.906 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.284 10.583 14.341 19.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.153 4.153 3 C -0.073 4.073 4 C 0.007 3.993 5 O -0.370 6.370 6 C -0.137 4.137 7 C -0.179 4.179 8 C -0.005 4.005 9 N -0.839 5.839 10 S 2.689 3.311 11 O -0.953 6.953 12 O -0.953 6.953 13 C -0.719 4.719 14 C 0.081 3.919 15 C -0.221 4.221 16 C -0.221 4.221 17 C -0.538 4.538 18 H 0.077 0.923 19 C -0.137 4.137 20 N -0.522 5.522 21 Si 0.722 3.278 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 C 0.004 3.996 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.222 0.778 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.109 0.891 40 H 0.135 0.865 41 H 0.140 0.860 42 H 0.045 0.955 43 H 0.113 0.887 44 H 0.055 0.945 45 H 0.055 0.945 46 H 0.113 0.887 47 H 0.045 0.955 48 H 0.072 0.928 49 H 0.113 0.887 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.326 10.671 12.954 18.312 hybrid contribution -0.500 -1.093 1.133 1.652 sum 6.826 9.578 14.088 18.352 Atomic orbital electron populations 1.21984 0.95908 1.02642 1.01607 1.21617 0.95906 0.94873 1.02865 1.20974 0.96330 0.96853 0.93192 1.22144 0.98808 0.93889 0.84413 1.86488 1.80347 1.53875 1.16324 1.21443 0.93429 1.00219 0.98615 1.22018 1.00615 1.00474 0.94823 1.21381 0.79497 1.01309 0.98291 1.57948 1.15384 1.73164 1.37438 1.05817 0.73675 0.78350 0.73220 1.93525 1.48844 1.67496 1.85445 1.93531 1.62133 1.87748 1.51874 1.30694 1.10262 1.19757 1.11167 1.17918 0.90720 0.95534 0.87717 1.22267 0.99987 0.96831 1.02976 1.22274 0.99247 0.98974 1.01620 1.20968 1.35170 0.95110 1.02522 0.92259 1.24929 0.95514 0.98335 0.94931 1.69807 1.38345 1.36074 1.07997 0.86508 0.78122 0.84664 0.78524 1.19839 1.20971 1.20976 1.21337 0.97445 0.95902 0.84874 0.91929 0.92473 0.92547 0.90979 0.91190 0.93810 0.93000 0.77846 0.92226 0.91051 0.90909 0.90871 0.91463 0.89104 0.86520 0.85993 0.95502 0.88655 0.94502 0.94501 0.88654 0.95497 0.92831 0.88743 0.91389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 7.90 37.16 0.29 -1.79 16 2 C -0.12 -1.42 3.98 -26.73 -0.11 -1.52 16 3 C -0.07 -0.77 0.38 -154.39 -0.06 -0.83 16 4 C 0.09 0.76 5.26 37.16 0.20 0.95 16 5 O -0.57 -4.95 12.41 -35.23 -0.44 -5.39 16 6 C -0.10 -0.99 4.62 -26.68 -0.12 -1.11 16 7 C -0.14 -1.45 5.74 -26.61 -0.15 -1.60 16 8 C 0.12 1.48 6.31 -3.71 -0.02 1.45 16 9 N -1.00 -14.51 2.57 -113.52 -0.29 -14.80 16 10 S 2.59 49.35 4.45 -107.50 -0.48 48.87 16 11 O -0.96 -20.34 14.35 -57.54 -0.83 -21.17 16 12 O -0.96 -20.56 14.34 -57.54 -0.83 -21.39 16 13 C -0.59 -11.55 3.93 37.16 0.15 -11.40 16 14 C 0.08 2.02 0.52 -155.66 -0.08 1.94 16 15 C -0.16 -4.02 7.77 37.15 0.29 -3.73 16 16 C -0.16 -4.05 7.78 37.16 0.29 -3.76 16 17 C -0.50 -13.01 8.01 -34.44 -0.28 -13.28 16 18 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 19 C 0.06 1.71 5.15 -17.82 -0.09 1.62 16 20 N -0.88 -24.11 9.35 55.43 0.52 -23.60 16 21 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 22 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 C 0.13 1.62 4.88 -3.72 -0.02 1.60 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.06 0.63 6.74 -51.93 -0.35 0.28 16 28 H 0.06 0.75 6.05 -51.93 -0.31 0.44 16 29 H 0.07 0.89 7.76 -51.93 -0.40 0.49 16 30 H 0.07 0.93 4.12 -51.93 -0.21 0.72 16 31 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.05 0.44 6.73 -51.93 -0.35 0.09 16 33 H 0.38 1.69 9.12 45.56 0.42 2.10 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.73 7.78 -51.93 -0.40 0.32 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.81 6.46 -51.93 -0.34 0.47 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.09 1.17 7.10 -51.93 -0.37 0.80 16 40 H 0.12 2.11 8.14 -51.92 -0.42 1.69 16 41 H 0.12 2.23 5.70 -51.93 -0.30 1.93 16 42 H 0.03 0.63 5.47 -51.93 -0.28 0.35 16 43 H 0.09 2.53 6.07 -51.93 -0.32 2.22 16 44 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.09 2.54 6.07 -51.93 -0.32 2.23 16 47 H 0.03 0.64 5.46 -51.93 -0.28 0.35 16 48 H 0.26 6.81 8.31 -40.82 -0.34 6.48 16 49 H 0.09 1.25 5.23 -51.93 -0.27 0.98 16 50 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 365.74 15.07 5.51 5.51 Total: -1.00 -31.79 365.74 -9.00 -40.79 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -7.43 Total: 7.01 kcal Atomic # 6 Polarization: -31.75 SS G_CDS: 0.28 Total: -31.47 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: 0.23 Total: -38.40 kcal Atomic # 8 Polarization: -45.86 SS G_CDS: -2.09 Total: -47.95 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: 49.35 SS G_CDS: -0.48 Total: 48.87 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.79 -9.00 -40.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331314388.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.830 kcal (2) G-P(sol) polarization free energy of solvation -31.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds