Wall clock time and date at job start Tue Mar 31 2020 17:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46930 * 2 1 4 4 C 1.52998 * 109.49719 * 54.45387 * 3 2 1 5 5 O 1.42900 * 109.47140 * 55.44240 * 4 3 2 6 6 C 1.53046 * 109.49621 * 174.51263 * 3 2 1 7 7 C 1.53044 * 109.53378 * 58.59104 * 6 3 2 8 8 C 1.53191 * 109.31691 * 61.36191 * 7 6 3 9 9 N 1.46930 * 108.77353 * 305.36808 * 8 7 6 10 10 S 1.65602 * 120.62782 * 233.58142 * 9 8 7 11 11 O 1.42096 * 104.27810 * 206.07252 * 10 9 8 12 12 O 1.42102 * 104.27987 * 333.93322 * 10 9 8 13 13 C 1.81405 * 104.44692 * 90.00036 * 10 9 8 14 14 C 1.53003 * 109.46884 * 180.02562 * 13 10 9 15 15 C 1.52994 * 109.47082 * 299.99799 * 14 13 10 16 16 C 1.53000 * 109.47263 * 59.99938 * 14 13 10 17 17 C 1.50703 * 109.46778 * 180.02562 * 14 13 10 18 18 H 1.07996 * 120.00054 * 359.97438 * 17 14 13 19 19 C 1.37873 * 119.99521 * 179.97438 * 17 14 13 20 20 N 1.31513 * 120.00762 * 359.97438 * 19 17 14 21 21 Si 1.86808 * 119.99777 * 180.02562 * 19 17 14 22 22 H 1.48505 * 109.46845 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47185 * 119.99618 * 21 19 17 24 24 H 1.48501 * 109.47068 * 239.99763 * 21 19 17 25 25 C 1.46923 * 118.74063 * 53.60556 * 9 8 7 26 26 H 1.09005 * 109.47095 * 175.18122 * 1 2 3 27 27 H 1.08994 * 109.47428 * 295.18019 * 1 2 3 28 28 H 1.09002 * 109.47301 * 55.18630 * 1 2 3 29 29 H 1.08999 * 109.47049 * 120.00115 * 2 1 3 30 30 H 1.09003 * 109.47039 * 240.00361 * 2 1 3 31 31 H 1.09000 * 109.47490 * 175.43853 * 4 3 2 32 32 H 1.08994 * 109.47054 * 295.44180 * 4 3 2 33 33 H 0.96708 * 114.00150 * 180.02562 * 5 4 3 34 34 H 1.08994 * 109.45775 * 178.60495 * 6 3 2 35 35 H 1.08992 * 109.46142 * 298.57047 * 6 3 2 36 36 H 1.09003 * 109.49767 * 181.31509 * 7 6 3 37 37 H 1.09000 * 109.50087 * 301.38046 * 7 6 3 38 38 H 1.09000 * 109.58721 * 65.15036 * 8 7 6 39 39 H 1.08994 * 109.59235 * 185.57792 * 8 7 6 40 40 H 1.09000 * 109.46850 * 300.00074 * 13 10 9 41 41 H 1.08995 * 109.46879 * 59.99861 * 13 10 9 42 42 H 1.09003 * 109.47500 * 60.00166 * 15 14 13 43 43 H 1.08998 * 109.47372 * 179.97438 * 15 14 13 44 44 H 1.09004 * 109.47773 * 300.00535 * 15 14 13 45 45 H 1.09003 * 109.46839 * 60.00005 * 16 14 13 46 46 H 1.08999 * 109.46815 * 179.97438 * 16 14 13 47 47 H 1.09002 * 109.47405 * 300.00127 * 16 14 13 48 48 H 0.96996 * 120.00716 * 180.02562 * 20 19 17 49 49 H 1.09002 * 109.58184 * 186.60396 * 25 9 8 50 50 H 1.09003 * 109.58661 * 66.18278 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4196 2.2034 1.1735 5 8 1.6977 1.5096 2.3914 6 6 3.5642 1.4454 0.1380 7 6 4.1840 0.6559 -1.0173 8 6 3.8173 1.3275 -2.3444 9 7 2.3559 1.4597 -2.4195 10 16 1.5216 0.8728 -3.7240 11 8 0.3469 1.6705 -3.7765 12 8 2.4685 0.8924 -4.7834 13 6 1.1119 -0.8346 -3.2682 14 6 0.3307 -1.4930 -4.4072 15 6 -0.9587 -0.7095 -4.6609 16 6 1.1845 -1.4949 -5.6768 17 6 -0.0103 -2.9112 -4.0283 18 1 0.2996 -3.3038 -3.0711 19 6 -0.7178 -3.7074 -4.9037 20 7 -1.0956 -3.2293 -6.0691 21 14 -1.1411 -5.4652 -4.4338 22 1 -0.6062 -5.7580 -3.0797 23 1 -2.6163 -5.6354 -4.4312 24 1 -0.5367 -6.3997 -5.4170 25 6 1.6489 2.1231 -1.3155 26 1 -0.3633 -1.0241 -0.0863 27 1 -0.3634 0.4372 0.9299 28 1 -0.3634 0.5867 -0.8437 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8442 3.2061 1.2215 32 1 0.3410 2.2719 1.0325 33 1 1.3332 1.9361 3.1791 34 1 3.9290 2.4722 0.1130 35 1 3.8440 0.9837 1.0848 36 1 5.2682 0.6386 -0.9057 37 1 3.8010 -0.3646 -1.0075 38 1 4.2765 2.3148 -2.3934 39 1 4.1720 0.7158 -3.1738 40 1 2.0305 -1.3929 -3.0879 41 1 0.5040 -0.8332 -2.3635 42 1 -0.7125 0.3165 -4.9347 43 1 -1.5150 -1.1782 -5.4726 44 1 -1.5670 -0.7080 -3.7564 45 1 2.1031 -2.0532 -5.4961 46 1 0.6281 -1.9644 -6.4881 47 1 1.4307 -0.4690 -5.9507 48 1 -1.5937 -3.7894 -6.6848 49 1 0.5729 2.0362 -1.4662 50 1 1.9313 3.1753 -1.2806 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331314388.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:08 Heat of formation + Delta-G solvation = -155.583075 kcal Electronic energy + Delta-G solvation = -30354.964029 eV Core-core repulsion = 26508.059480 eV Total energy + Delta-G solvation = -3846.904549 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.181 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.80104 -38.23184 -38.16226 -37.40344 -36.92197 -34.74535 -33.62548 -33.07188 -30.94504 -28.34872 -27.71545 -27.25932 -26.85321 -25.61839 -24.50339 -22.67781 -21.29781 -20.10628 -19.12198 -18.81074 -18.17411 -17.91937 -17.11207 -16.91767 -16.76689 -16.35558 -15.92102 -15.61266 -15.27288 -15.15703 -14.80078 -14.69138 -14.49254 -14.37177 -13.99062 -13.78680 -13.65083 -13.45647 -13.23107 -13.14347 -12.94126 -12.89199 -12.80347 -12.74812 -12.49758 -12.46144 -12.22112 -12.14598 -12.03796 -11.93750 -11.84329 -11.59377 -11.56298 -11.31789 -11.15156 -11.00614 -10.67919 -10.60021 -10.42913 -9.84865 -8.03607 -6.21776 -0.66280 1.41477 1.44684 1.54117 1.75133 2.43329 2.86099 3.13904 3.19758 3.44699 3.54105 3.82524 3.95326 4.01106 4.11102 4.16823 4.21872 4.24790 4.42680 4.51995 4.55077 4.57379 4.62587 4.65425 4.73725 4.78206 4.83317 4.83967 4.89383 4.92820 4.95580 5.03199 5.07242 5.11994 5.23905 5.30063 5.31107 5.38800 5.40621 5.48428 5.50307 5.57798 5.64064 5.68644 5.95272 6.10162 6.33544 6.82595 7.03810 7.46370 8.96589 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014773 B = 0.004623 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.849313 B = 6055.103242 C = 6927.409009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.115 4.115 3 C -0.069 4.069 4 C 0.088 3.912 5 O -0.580 6.580 6 C -0.095 4.095 7 C -0.138 4.138 8 C 0.112 3.888 9 N -0.995 5.995 10 S 2.605 3.395 11 O -0.987 6.987 12 O -0.988 6.988 13 C -0.587 4.587 14 C 0.072 3.928 15 C -0.158 4.158 16 C -0.159 4.159 17 C -0.512 4.512 18 H 0.061 0.939 19 C 0.019 3.981 20 N -0.908 5.908 21 Si 0.952 3.048 22 H -0.267 1.267 23 H -0.283 1.283 24 H -0.283 1.283 25 C 0.122 3.878 26 H 0.047 0.953 27 H 0.073 0.927 28 H 0.045 0.955 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.394 0.606 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.062 0.938 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.130 0.870 41 H 0.133 0.867 42 H 0.030 0.970 43 H 0.072 0.928 44 H 0.039 0.961 45 H 0.039 0.961 46 H 0.072 0.928 47 H 0.029 0.971 48 H 0.261 0.739 49 H 0.083 0.917 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.508 11.396 16.720 21.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.152 4.152 3 C -0.071 4.071 4 C 0.010 3.990 5 O -0.388 6.388 6 C -0.132 4.132 7 C -0.176 4.176 8 C -0.013 4.013 9 N -0.833 5.833 10 S 2.704 3.296 11 O -0.977 6.977 12 O -0.979 6.979 13 C -0.720 4.720 14 C 0.070 3.930 15 C -0.215 4.215 16 C -0.216 4.216 17 C -0.551 4.551 18 H 0.079 0.921 19 C -0.180 4.180 20 N -0.547 5.547 21 Si 0.778 3.222 22 H -0.191 1.191 23 H -0.209 1.209 24 H -0.209 1.209 25 C -0.003 4.003 26 H 0.067 0.933 27 H 0.092 0.908 28 H 0.064 0.936 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.243 0.757 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.114 0.886 37 H 0.081 0.919 38 H 0.107 0.893 39 H 0.099 0.901 40 H 0.148 0.852 41 H 0.151 0.849 42 H 0.048 0.952 43 H 0.090 0.910 44 H 0.058 0.942 45 H 0.058 0.942 46 H 0.091 0.909 47 H 0.048 0.952 48 H 0.071 0.929 49 H 0.102 0.898 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.541 11.477 15.349 20.982 hybrid contribution -0.851 -1.291 0.448 1.610 sum 7.690 10.186 15.797 20.308 Atomic orbital electron populations 1.21988 0.96475 1.01677 1.02051 1.21592 0.95399 0.96114 1.02116 1.20942 0.97255 0.95711 0.93204 1.22074 0.98853 0.94268 0.83804 1.86434 1.80718 1.54612 1.17054 1.21422 0.92472 1.01070 0.98248 1.22019 1.02082 0.99705 0.93837 1.21669 0.77780 1.02673 0.99152 1.57584 1.16282 1.72517 1.36952 1.05033 0.73172 0.77684 0.73733 1.93485 1.50315 1.67682 1.86215 1.93489 1.62614 1.87870 1.53888 1.30621 1.10503 1.20986 1.09841 1.17897 0.90864 0.95311 0.88898 1.22185 1.00298 0.96881 1.02185 1.22197 0.99125 0.98900 1.01423 1.21269 1.35099 0.96223 1.02540 0.92118 1.25641 0.95608 1.01792 0.94955 1.69940 1.38799 1.37190 1.08748 0.85599 0.77704 0.80492 0.78395 1.19108 1.20886 1.20897 1.21600 0.96804 0.97172 0.84768 0.93347 0.90788 0.93585 0.91032 0.92570 0.91849 0.92851 0.75656 0.90595 0.90925 0.88610 0.91945 0.89293 0.90105 0.85172 0.84873 0.95154 0.90965 0.94184 0.94154 0.90949 0.95184 0.92918 0.89838 0.89015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.03 7.90 71.98 0.57 -3.46 16 2 C -0.11 -2.65 3.98 30.59 0.12 -2.53 16 3 C -0.07 -1.31 0.38 -52.11 -0.02 -1.33 16 4 C 0.09 1.28 5.26 71.98 0.38 1.66 16 5 O -0.58 -8.35 12.41 -148.98 -1.85 -10.20 16 6 C -0.09 -1.56 4.62 30.62 0.14 -1.42 16 7 C -0.14 -2.46 5.74 30.67 0.18 -2.29 16 8 C 0.11 2.48 6.31 86.36 0.55 3.03 16 9 N -1.00 -27.19 2.57 -513.08 -1.32 -28.50 16 10 S 2.61 98.46 4.45 -56.49 -0.25 98.21 16 11 O -0.99 -41.66 14.35 -127.65 -1.83 -43.49 16 12 O -0.99 -42.13 14.34 -127.65 -1.83 -43.96 16 13 C -0.59 -23.16 3.93 71.98 0.28 -22.87 16 14 C 0.07 3.55 0.52 -52.93 -0.03 3.52 16 15 C -0.16 -7.96 7.77 71.98 0.56 -7.40 16 16 C -0.16 -8.02 7.78 71.98 0.56 -7.46 16 17 C -0.51 -26.91 8.01 25.60 0.21 -26.71 16 18 H 0.06 3.09 7.74 -2.91 -0.02 3.07 16 19 C 0.02 1.03 5.15 84.65 0.44 1.47 16 20 N -0.91 -50.57 9.35 21.45 0.20 -50.36 16 21 Si 0.95 42.50 29.54 68.60 2.03 44.52 16 22 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 23 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 24 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 25 C 0.12 2.75 4.88 86.36 0.42 3.17 16 26 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 27 H 0.07 1.52 6.74 -2.39 -0.02 1.50 16 28 H 0.05 1.21 6.05 -2.39 -0.01 1.19 16 29 H 0.07 1.65 7.76 -2.39 -0.02 1.64 16 30 H 0.06 1.44 4.12 -2.39 -0.01 1.43 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.05 0.75 6.73 -2.39 -0.02 0.74 16 33 H 0.39 2.29 9.12 -74.05 -0.68 1.62 16 34 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.07 1.23 7.78 -2.39 -0.02 1.21 16 36 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.06 1.26 6.46 -2.39 -0.02 1.25 16 38 H 0.09 1.62 8.14 -2.39 -0.02 1.61 16 39 H 0.08 1.97 7.10 -2.39 -0.02 1.96 16 40 H 0.13 4.68 8.14 -2.39 -0.02 4.66 16 41 H 0.13 4.87 5.70 -2.39 -0.01 4.86 16 42 H 0.03 1.46 5.47 -2.39 -0.01 1.45 16 43 H 0.07 3.96 6.07 -2.39 -0.01 3.95 16 44 H 0.04 1.91 8.14 -2.38 -0.02 1.89 16 45 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.07 3.98 6.07 -2.39 -0.01 3.96 16 47 H 0.03 1.45 5.46 -2.39 -0.01 1.44 16 48 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 49 H 0.08 2.10 5.23 -2.39 -0.01 2.09 16 50 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -68.17 365.74 -0.23 -68.41 By element: Atomic # 1 Polarization: 27.73 SS G_CDS: 0.27 Total: 28.00 kcal Atomic # 6 Polarization: -66.97 SS G_CDS: 4.35 Total: -62.62 kcal Atomic # 7 Polarization: -77.75 SS G_CDS: -1.12 Total: -78.87 kcal Atomic # 8 Polarization: -92.14 SS G_CDS: -5.51 Total: -97.65 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.52 kcal Atomic # 16 Polarization: 98.46 SS G_CDS: -0.25 Total: 98.21 kcal Total: -68.17 -0.23 -68.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331314388.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.177 kcal (2) G-P(sol) polarization free energy of solvation -68.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds