Wall clock time and date at job start Tue Mar 31 2020 17:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50705 * 109.47143 * 2 1 4 4 C 1.38228 * 120.41942 * 265.44069 * 3 2 1 5 5 N 1.31857 * 120.76230 * 179.97438 * 4 3 2 6 6 C 1.31882 * 121.72415 * 359.97438 * 5 4 3 7 7 C 1.38179 * 120.77099 * 359.97438 * 6 5 4 8 8 C 1.38627 * 120.41643 * 85.39207 * 3 2 1 9 9 C 1.50697 * 120.79215 * 0.04440 * 8 3 2 10 10 H 1.08996 * 109.47319 * 316.64808 * 9 8 3 11 11 C 1.53002 * 109.47082 * 196.64328 * 9 8 3 12 12 N 1.46505 * 109.47006 * 76.64696 * 9 8 3 13 13 C 1.34781 * 119.99822 * 208.30929 * 12 9 8 14 14 O 1.21340 * 119.99994 * 359.97438 * 13 12 9 15 15 C 1.49452 * 119.99681 * 180.02562 * 13 12 9 16 16 O 1.21351 * 120.00177 * 359.97438 * 15 13 12 17 17 N 1.34773 * 119.99510 * 180.02562 * 15 13 12 18 18 C 1.46505 * 119.99651 * 179.97438 * 17 15 13 19 19 C 1.52997 * 109.47249 * 179.97438 * 18 17 15 20 20 C 1.53000 * 109.47329 * 179.97438 * 19 18 17 21 21 C 1.50701 * 109.46825 * 180.02562 * 20 19 18 22 22 H 1.07993 * 120.00686 * 0.02562 * 21 20 19 23 23 C 1.37882 * 119.99565 * 180.02562 * 21 20 19 24 24 N 1.31509 * 120.00269 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99731 * 180.02562 * 23 21 20 26 26 H 1.48488 * 109.47471 * 59.99718 * 25 23 21 27 27 H 1.48505 * 109.46697 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.46983 * 299.99467 * 25 23 21 29 29 H 1.09003 * 109.47345 * 65.01273 * 1 2 3 30 30 H 1.08995 * 109.47210 * 185.01435 * 1 2 3 31 31 H 1.09000 * 109.47459 * 305.01270 * 1 2 3 32 32 H 1.08998 * 109.47218 * 240.00489 * 2 1 3 33 33 H 1.09001 * 109.47433 * 119.99878 * 2 1 3 34 34 H 1.07995 * 119.61738 * 0.25373 * 4 3 2 35 35 H 1.08001 * 119.61393 * 180.02562 * 6 5 4 36 36 H 1.08002 * 120.42458 * 180.02562 * 7 6 5 37 37 H 1.09003 * 109.46898 * 174.64905 * 11 9 8 38 38 H 1.08996 * 109.47131 * 294.64285 * 11 9 8 39 39 H 1.09001 * 109.47081 * 54.64577 * 11 9 8 40 40 H 0.96999 * 120.00109 * 28.30434 * 12 9 8 41 41 H 0.97000 * 120.00770 * 359.97438 * 17 15 13 42 42 H 1.09000 * 109.47049 * 299.99403 * 18 17 15 43 43 H 1.09001 * 109.47266 * 59.99813 * 18 17 15 44 44 H 1.09000 * 109.47713 * 300.00553 * 19 18 17 45 45 H 1.09006 * 109.46799 * 59.99648 * 19 18 17 46 46 H 1.09000 * 109.47356 * 300.00326 * 20 19 18 47 47 H 1.09001 * 109.46879 * 60.00688 * 20 19 18 48 48 H 0.97000 * 120.00635 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3550 2.0491 -1.1882 5 7 2.7946 3.2922 -1.1961 6 6 2.9433 3.9823 -0.0821 7 6 2.6398 3.4205 1.1433 8 6 2.1757 2.1146 1.1916 9 6 1.8347 1.4653 2.5081 10 1 0.8986 0.9156 2.4104 11 6 1.6837 2.5426 3.5840 12 7 2.9061 0.5415 2.8890 13 6 2.6289 -0.5335 3.6532 14 8 1.4921 -0.7360 4.0261 15 6 3.7219 -1.4756 4.0422 16 8 4.8589 -1.2729 3.6697 17 7 3.4446 -2.5509 4.8059 18 6 4.5160 -3.4747 5.1868 19 6 3.9374 -4.5997 6.0473 20 6 5.0561 -5.5649 6.4446 21 6 4.4860 -6.6733 7.2916 22 1 3.4313 -6.6882 7.5231 23 6 5.3111 -7.6685 7.7711 24 7 6.5955 -7.6507 7.4889 25 14 4.6044 -9.0429 8.8204 26 1 3.5710 -9.7757 8.0458 27 1 5.6905 -9.9789 9.2071 28 1 3.9900 -8.4661 10.0432 29 1 -0.3634 0.4341 -0.9315 30 1 -0.3633 -1.0237 0.0898 31 1 -0.3634 0.5896 0.8417 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.2414 1.5172 -2.1212 35 1 3.3056 4.9987 -0.1283 36 1 2.7633 3.9909 2.0520 37 1 1.3447 2.0835 4.5127 38 1 2.6453 3.0286 3.7490 39 1 0.9537 3.2830 3.2570 40 1 3.8149 0.7035 2.5912 41 1 2.5357 -2.7132 5.1035 42 1 4.9665 -3.8984 4.2893 43 1 5.2747 -2.9367 5.7551 44 1 3.4869 -4.1759 6.9448 45 1 3.1784 -5.1378 5.4794 46 1 5.5062 -5.9888 5.5469 47 1 5.8153 -5.0270 7.0124 48 1 7.1759 -8.3510 7.8258 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343326583.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:04 Heat of formation + Delta-G solvation = -60.001384 kcal Electronic energy + Delta-G solvation = -27768.613640 eV Core-core repulsion = 23822.702623 eV Total energy + Delta-G solvation = -3945.911016 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.31160 -40.45545 -38.68686 -36.67010 -35.65233 -34.81954 -33.41980 -32.78557 -31.28166 -30.30861 -29.91580 -27.31594 -25.76830 -24.71008 -24.40502 -22.76580 -21.80989 -21.28505 -20.81107 -20.30386 -18.66007 -17.30634 -17.13641 -16.79753 -16.38295 -16.05299 -15.81136 -15.68907 -15.05319 -14.88836 -14.50429 -14.47238 -14.29818 -14.14531 -13.89829 -13.72301 -13.62763 -13.17287 -12.89641 -12.56611 -12.43310 -12.32469 -11.94989 -11.92578 -11.83444 -11.76516 -11.57754 -11.30182 -10.91171 -10.79244 -10.65326 -10.24730 -9.92929 -9.91299 -9.80910 -9.58784 -9.41740 -9.35615 -9.16717 -9.03400 -8.39668 -6.04449 -4.07681 0.63587 0.67542 1.32760 2.29509 3.13643 3.31006 3.31489 3.35727 3.37880 3.64154 3.87526 4.02609 4.20740 4.37464 4.39424 4.43079 4.45909 4.71804 4.77545 4.83633 4.92555 4.99858 5.12672 5.19518 5.31381 5.33005 5.39533 5.43079 5.53781 5.55248 5.64773 5.65234 5.70290 5.81593 5.88081 5.92827 6.04248 6.21519 6.24328 6.50469 6.64032 6.82147 6.92008 7.32111 7.53356 7.59071 7.62461 7.70713 7.93390 7.98376 8.34619 8.98551 9.56669 11.06725 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.024206 B = 0.001826 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.443071 B =15334.330273 C =15429.241327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 C -0.110 4.110 4 C 0.100 3.900 5 N -0.478 5.478 6 C 0.090 3.910 7 C -0.153 4.153 8 C -0.061 4.061 9 C 0.179 3.821 10 H 0.109 0.891 11 C -0.167 4.167 12 N -0.696 5.696 13 C 0.511 3.489 14 O -0.516 6.516 15 C 0.499 3.501 16 O -0.525 6.525 17 N -0.690 5.690 18 C 0.113 3.887 19 C -0.123 4.123 20 C 0.025 3.975 21 C -0.524 4.524 22 H 0.056 0.944 23 C 0.057 3.943 24 N -0.894 5.894 25 Si 0.894 3.106 26 H -0.277 1.277 27 H -0.287 1.287 28 H -0.277 1.277 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.156 0.844 35 H 0.157 0.843 36 H 0.141 0.859 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.414 0.586 41 H 0.411 0.589 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.057 0.943 45 H 0.057 0.943 46 H 0.020 0.980 47 H 0.020 0.980 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.422 24.056 -15.390 30.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.127 4.127 3 C -0.113 4.113 4 C -0.057 4.057 5 N -0.186 5.186 6 C -0.066 4.066 7 C -0.173 4.173 8 C -0.069 4.069 9 C 0.076 3.924 10 H 0.127 0.873 11 C -0.225 4.225 12 N -0.350 5.350 13 C 0.292 3.708 14 O -0.391 6.391 15 C 0.279 3.721 16 O -0.401 6.401 17 N -0.342 5.342 18 C -0.008 4.008 19 C -0.161 4.161 20 C -0.013 4.013 21 C -0.562 4.562 22 H 0.074 0.926 23 C -0.144 4.144 24 N -0.533 5.533 25 Si 0.722 3.278 26 H -0.202 1.202 27 H -0.213 1.213 28 H -0.202 1.202 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.174 0.826 35 H 0.174 0.826 36 H 0.159 0.841 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.251 0.749 41 H 0.247 0.753 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.038 0.962 47 H 0.038 0.962 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.045 24.326 -16.132 31.209 hybrid contribution -0.429 -1.125 1.401 1.847 sum -11.474 23.200 -14.731 29.782 Atomic orbital electron populations 1.21746 0.94053 1.02504 1.02081 1.20578 0.96670 0.91598 1.03851 1.20880 0.99145 0.97709 0.93533 1.22715 0.94798 0.90789 0.97407 1.67684 1.11734 1.07731 1.31433 1.22780 0.96344 0.99906 0.87587 1.22198 0.99588 0.95407 1.00147 1.20197 0.98056 0.94330 0.94346 1.19886 0.92031 0.90351 0.90159 0.87293 1.22276 1.02713 0.98416 0.99108 1.45841 1.12861 1.24610 1.51727 1.20407 0.89128 0.82013 0.79218 1.90764 1.21759 1.73730 1.52863 1.19964 0.88491 0.82905 0.80751 1.90774 1.21565 1.73821 1.53971 1.46074 1.14133 1.24178 1.49808 1.21859 0.88983 0.90189 0.99815 1.21930 1.01096 0.95262 0.97774 1.19027 0.92610 0.92904 0.96751 1.21157 0.94680 1.08484 1.31894 0.92617 1.25028 0.94858 0.98137 0.96424 1.69946 1.03732 1.34092 1.45493 0.86628 0.78594 0.81829 0.80770 1.20219 1.21267 1.20229 0.92387 0.91709 0.92519 0.90262 0.90470 0.82648 0.82560 0.84084 0.91092 0.91562 0.90872 0.74946 0.75297 0.91054 0.91065 0.92417 0.92420 0.96202 0.96203 0.92841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.76 37.16 0.36 -0.60 16 2 C -0.09 -0.64 5.46 -27.88 -0.15 -0.79 16 3 C -0.11 -0.84 5.15 -104.48 -0.54 -1.38 16 4 C 0.10 0.79 10.85 -17.54 -0.19 0.60 16 5 N -0.48 -4.29 10.36 -13.25 -0.14 -4.43 16 6 C 0.09 0.64 11.18 -17.55 -0.20 0.44 16 7 C -0.15 -0.97 9.12 -39.44 -0.36 -1.33 16 8 C -0.06 -0.44 5.28 -104.32 -0.55 -0.99 16 9 C 0.18 1.38 2.05 -69.08 -0.14 1.24 16 10 H 0.11 0.94 5.63 -51.93 -0.29 0.65 16 11 C -0.17 -1.08 8.28 37.16 0.31 -0.77 16 12 N -0.70 -6.47 4.23 -55.36 -0.23 -6.70 16 13 C 0.51 6.11 7.79 -11.58 -0.09 6.02 16 14 O -0.52 -6.92 16.08 5.51 0.09 -6.83 16 15 C 0.50 7.07 7.89 -11.59 -0.09 6.98 16 16 O -0.52 -8.59 16.48 5.50 0.09 -8.50 16 17 N -0.69 -9.88 5.55 -60.73 -0.34 -10.21 16 18 C 0.11 1.89 5.67 -4.04 -0.02 1.87 16 19 C -0.12 -2.33 5.27 -26.73 -0.14 -2.47 16 20 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 21 C -0.52 -14.44 9.11 -34.44 -0.31 -14.75 16 22 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 23 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 24 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 25 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 28 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.39 6.91 -51.93 -0.36 0.03 16 32 H 0.08 0.49 8.06 -51.93 -0.42 0.07 16 33 H 0.08 0.67 6.52 -51.93 -0.34 0.33 16 34 H 0.16 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.16 0.71 8.06 -52.49 -0.42 0.29 16 36 H 0.14 0.60 6.25 -52.49 -0.33 0.27 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.37 7.21 -51.93 -0.37 0.00 16 39 H 0.07 0.37 7.99 -51.93 -0.42 -0.05 16 40 H 0.41 3.74 8.10 -40.82 -0.33 3.41 16 41 H 0.41 5.33 7.94 -40.82 -0.32 5.00 16 42 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 48 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 400.20 15.07 6.03 6.03 Total: -1.00 -32.35 400.20 -8.51 -40.86 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -7.37 Total: 3.17 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: -2.35 Total: -3.95 kcal Atomic # 7 Polarization: -47.13 SS G_CDS: 0.03 Total: -47.10 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: 0.18 Total: -15.33 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.35 -8.51 -40.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343326583.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.143 kcal (2) G-P(sol) polarization free energy of solvation -32.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds