Wall clock time and date at job start Tue Mar 31 2020 17:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50705 * 109.47143 * 2 1 4 4 C 1.38228 * 120.41942 * 265.44069 * 3 2 1 5 5 N 1.31857 * 120.76230 * 179.97438 * 4 3 2 6 6 C 1.31882 * 121.72415 * 359.97438 * 5 4 3 7 7 C 1.38179 * 120.77099 * 359.97438 * 6 5 4 8 8 C 1.38627 * 120.41643 * 85.39207 * 3 2 1 9 9 C 1.50697 * 120.79215 * 0.04440 * 8 3 2 10 10 H 1.08996 * 109.47319 * 316.64808 * 9 8 3 11 11 C 1.53002 * 109.47082 * 196.64328 * 9 8 3 12 12 N 1.46505 * 109.47006 * 76.64696 * 9 8 3 13 13 C 1.34781 * 119.99822 * 208.30929 * 12 9 8 14 14 O 1.21340 * 119.99994 * 359.97438 * 13 12 9 15 15 C 1.49452 * 119.99681 * 180.02562 * 13 12 9 16 16 O 1.21351 * 120.00177 * 359.97438 * 15 13 12 17 17 N 1.34773 * 119.99510 * 180.02562 * 15 13 12 18 18 C 1.46505 * 119.99651 * 179.97438 * 17 15 13 19 19 C 1.52997 * 109.47249 * 179.97438 * 18 17 15 20 20 C 1.53000 * 109.47329 * 179.97438 * 19 18 17 21 21 C 1.50701 * 109.46825 * 180.02562 * 20 19 18 22 22 H 1.07993 * 120.00686 * 0.02562 * 21 20 19 23 23 C 1.37882 * 119.99565 * 180.02562 * 21 20 19 24 24 N 1.31509 * 120.00269 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99731 * 180.02562 * 23 21 20 26 26 H 1.48488 * 109.47471 * 59.99718 * 25 23 21 27 27 H 1.48505 * 109.46697 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.46983 * 299.99467 * 25 23 21 29 29 H 1.09003 * 109.47345 * 65.01273 * 1 2 3 30 30 H 1.08995 * 109.47210 * 185.01435 * 1 2 3 31 31 H 1.09000 * 109.47459 * 305.01270 * 1 2 3 32 32 H 1.08998 * 109.47218 * 240.00489 * 2 1 3 33 33 H 1.09001 * 109.47433 * 119.99878 * 2 1 3 34 34 H 1.07995 * 119.61738 * 0.25373 * 4 3 2 35 35 H 1.08001 * 119.61393 * 180.02562 * 6 5 4 36 36 H 1.08002 * 120.42458 * 180.02562 * 7 6 5 37 37 H 1.09003 * 109.46898 * 174.64905 * 11 9 8 38 38 H 1.08996 * 109.47131 * 294.64285 * 11 9 8 39 39 H 1.09001 * 109.47081 * 54.64577 * 11 9 8 40 40 H 0.96999 * 120.00109 * 28.30434 * 12 9 8 41 41 H 0.97000 * 120.00770 * 359.97438 * 17 15 13 42 42 H 1.09000 * 109.47049 * 299.99403 * 18 17 15 43 43 H 1.09001 * 109.47266 * 59.99813 * 18 17 15 44 44 H 1.09000 * 109.47713 * 300.00553 * 19 18 17 45 45 H 1.09006 * 109.46799 * 59.99648 * 19 18 17 46 46 H 1.09000 * 109.47356 * 300.00326 * 20 19 18 47 47 H 1.09001 * 109.46879 * 60.00688 * 20 19 18 48 48 H 0.97000 * 120.00635 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3550 2.0491 -1.1882 5 7 2.7946 3.2922 -1.1961 6 6 2.9433 3.9823 -0.0821 7 6 2.6398 3.4205 1.1433 8 6 2.1757 2.1146 1.1916 9 6 1.8347 1.4653 2.5081 10 1 0.8986 0.9156 2.4104 11 6 1.6837 2.5426 3.5840 12 7 2.9061 0.5415 2.8890 13 6 2.6289 -0.5335 3.6532 14 8 1.4921 -0.7360 4.0261 15 6 3.7219 -1.4756 4.0422 16 8 4.8589 -1.2729 3.6697 17 7 3.4446 -2.5509 4.8059 18 6 4.5160 -3.4747 5.1868 19 6 3.9374 -4.5997 6.0473 20 6 5.0561 -5.5649 6.4446 21 6 4.4860 -6.6733 7.2916 22 1 3.4313 -6.6882 7.5231 23 6 5.3111 -7.6685 7.7711 24 7 6.5955 -7.6507 7.4889 25 14 4.6044 -9.0429 8.8204 26 1 3.5710 -9.7757 8.0458 27 1 5.6905 -9.9789 9.2071 28 1 3.9900 -8.4661 10.0432 29 1 -0.3634 0.4341 -0.9315 30 1 -0.3633 -1.0237 0.0898 31 1 -0.3634 0.5896 0.8417 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.2414 1.5172 -2.1212 35 1 3.3056 4.9987 -0.1283 36 1 2.7633 3.9909 2.0520 37 1 1.3447 2.0835 4.5127 38 1 2.6453 3.0286 3.7490 39 1 0.9537 3.2830 3.2570 40 1 3.8149 0.7035 2.5912 41 1 2.5357 -2.7132 5.1035 42 1 4.9665 -3.8984 4.2893 43 1 5.2747 -2.9367 5.7551 44 1 3.4869 -4.1759 6.9448 45 1 3.1784 -5.1378 5.4794 46 1 5.5062 -5.9888 5.5469 47 1 5.8153 -5.0270 7.0124 48 1 7.1759 -8.3510 7.8258 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343326583.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:03 Heat of formation + Delta-G solvation = -81.306356 kcal Electronic energy + Delta-G solvation = -27769.537492 eV Core-core repulsion = 23822.702623 eV Total energy + Delta-G solvation = -3946.834869 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.07654 -41.31388 -39.74488 -37.49899 -37.01492 -35.46161 -35.19939 -33.54278 -33.03846 -30.88525 -30.48075 -28.97686 -26.72120 -25.62416 -25.19682 -24.18151 -22.41775 -22.37269 -21.95234 -21.40539 -19.74185 -18.53806 -18.11383 -17.73646 -17.58006 -17.15252 -16.78539 -16.45831 -16.31511 -16.11502 -16.02042 -15.17757 -15.11692 -14.89570 -14.79445 -14.66268 -14.26961 -14.19311 -13.89858 -13.78769 -13.52515 -13.45398 -13.12404 -13.00811 -12.83184 -12.73010 -12.54836 -12.50269 -12.43885 -12.12364 -11.84506 -11.69685 -11.56297 -11.25558 -10.94626 -10.62658 -10.54186 -10.50230 -10.33425 -10.26865 -9.90802 -8.19209 -6.30190 0.04824 0.14969 0.27454 1.30709 1.42355 1.44744 1.52655 2.06860 2.41527 2.55013 2.86338 3.14571 3.27591 3.37811 3.53826 3.68160 3.84229 3.89578 4.07767 4.13633 4.17733 4.23680 4.33545 4.38509 4.48782 4.52142 4.59366 4.68791 4.77154 4.85884 4.89144 4.90329 4.91246 5.00152 5.09363 5.13429 5.14911 5.18749 5.22264 5.28776 5.38756 5.51490 5.70699 5.72706 5.83888 5.84449 6.22334 6.28066 6.64627 6.86531 6.87300 6.99389 7.39091 8.92376 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.024206 B = 0.001826 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.443071 B =15334.330273 C =15429.241327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.087 4.087 3 C -0.115 4.115 4 C 0.089 3.911 5 N -0.503 5.503 6 C 0.083 3.917 7 C -0.146 4.146 8 C -0.067 4.067 9 C 0.181 3.819 10 H 0.100 0.900 11 C -0.164 4.164 12 N -0.682 5.682 13 C 0.520 3.480 14 O -0.531 6.531 15 C 0.500 3.500 16 O -0.548 6.548 17 N -0.685 5.685 18 C 0.127 3.873 19 C -0.106 4.106 20 C 0.025 3.975 21 C -0.543 4.543 22 H 0.065 0.935 23 C -0.002 4.002 24 N -0.933 5.933 25 Si 0.965 3.035 26 H -0.267 1.267 27 H -0.286 1.286 28 H -0.267 1.267 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.051 0.949 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.168 0.832 35 H 0.180 0.820 36 H 0.165 0.835 37 H 0.057 0.943 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.417 0.583 41 H 0.420 0.580 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.067 0.933 46 H -0.004 1.004 47 H -0.004 1.004 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.899 25.176 -15.297 32.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.125 4.125 3 C -0.118 4.118 4 C -0.068 4.068 5 N -0.211 5.211 6 C -0.074 4.074 7 C -0.166 4.166 8 C -0.075 4.075 9 C 0.078 3.922 10 H 0.118 0.882 11 C -0.222 4.222 12 N -0.335 5.335 13 C 0.301 3.699 14 O -0.408 6.408 15 C 0.281 3.719 16 O -0.426 6.426 17 N -0.337 5.337 18 C 0.004 3.996 19 C -0.144 4.144 20 C -0.013 4.013 21 C -0.581 4.581 22 H 0.083 0.917 23 C -0.200 4.200 24 N -0.573 5.573 25 Si 0.790 3.210 26 H -0.191 1.191 27 H -0.211 1.211 28 H -0.192 1.192 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.105 0.895 33 H 0.080 0.920 34 H 0.185 0.815 35 H 0.197 0.803 36 H 0.182 0.818 37 H 0.076 0.924 38 H 0.096 0.904 39 H 0.109 0.891 40 H 0.254 0.746 41 H 0.257 0.743 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.086 0.914 45 H 0.086 0.914 46 H 0.014 0.986 47 H 0.014 0.986 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.551 25.478 -16.056 32.626 hybrid contribution 0.059 -1.399 1.313 1.920 sum -12.491 24.079 -14.743 30.874 Atomic orbital electron populations 1.21722 0.93610 1.02442 1.02319 1.20550 0.97042 0.91468 1.03429 1.20936 0.99288 0.97810 0.93748 1.22935 0.94937 0.90830 0.98065 1.67699 1.12537 1.08298 1.32606 1.23225 0.95955 1.00828 0.87370 1.22428 0.98330 0.94955 1.00882 1.20209 0.98621 0.94885 0.93830 1.19972 0.90922 0.90258 0.91006 0.88167 1.22267 1.03883 0.98193 0.97846 1.45829 1.13513 1.23818 1.50309 1.19888 0.88056 0.82239 0.79755 1.90766 1.21892 1.74202 1.53901 1.20342 0.88763 0.82836 0.79969 1.90763 1.22736 1.74373 1.54751 1.45873 1.13928 1.23977 1.49956 1.21474 0.89257 0.89875 0.98975 1.21638 0.99159 0.94835 0.98721 1.18931 0.93786 0.93472 0.95101 1.21651 0.95245 1.09201 1.31983 0.91724 1.25989 0.95178 1.00973 0.97856 1.70086 1.05193 1.35151 1.46861 0.85500 0.77932 0.78464 0.79140 1.19143 1.21117 1.19155 0.91558 0.91792 0.92959 0.89487 0.92042 0.81505 0.80322 0.81756 0.92430 0.90394 0.89050 0.74620 0.74276 0.91775 0.91762 0.91407 0.91417 0.98577 0.98566 0.92799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.76 71.98 0.70 -1.08 16 2 C -0.09 -1.19 5.46 29.85 0.16 -1.03 16 3 C -0.12 -1.64 5.15 -19.77 -0.10 -1.75 16 4 C 0.09 1.33 10.85 84.69 0.92 2.25 16 5 N -0.50 -8.43 10.36 -195.85 -2.03 -10.46 16 6 C 0.08 1.01 11.18 84.67 0.95 1.95 16 7 C -0.15 -1.51 9.12 22.36 0.20 -1.30 16 8 C -0.07 -0.87 5.28 -19.67 -0.10 -0.97 16 9 C 0.18 2.54 2.05 44.24 0.09 2.63 16 10 H 0.10 1.64 5.63 -2.39 -0.01 1.62 16 11 C -0.16 -1.76 8.28 71.98 0.60 -1.16 16 12 N -0.68 -11.94 4.23 -447.43 -1.89 -13.83 16 13 C 0.52 11.99 7.79 87.27 0.68 12.67 16 14 O -0.53 -13.74 16.08 -3.21 -0.05 -13.79 16 15 C 0.50 13.87 7.89 87.27 0.69 14.56 16 16 O -0.55 -17.78 16.48 -3.25 -0.05 -17.84 16 17 N -0.69 -19.11 5.55 -464.41 -2.58 -21.69 16 18 C 0.13 4.24 5.67 86.38 0.49 4.73 16 19 C -0.11 -3.98 5.27 30.59 0.16 -3.82 16 20 C 0.02 1.26 4.97 29.85 0.15 1.41 16 21 C -0.54 -29.99 9.11 25.60 0.23 -29.75 16 22 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 23 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 24 N -0.93 -56.24 13.29 21.45 0.28 -55.96 16 25 Si 0.97 43.56 29.54 68.60 2.03 45.59 16 26 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 27 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 28 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 29 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.05 0.69 6.91 -2.39 -0.02 0.67 16 32 H 0.09 1.03 8.06 -2.39 -0.02 1.01 16 33 H 0.06 1.04 6.52 -2.39 -0.02 1.02 16 34 H 0.17 1.88 8.06 -2.91 -0.02 1.86 16 35 H 0.18 1.20 8.06 -2.91 -0.02 1.17 16 36 H 0.17 0.86 6.25 -2.91 -0.02 0.84 16 37 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.08 0.66 7.21 -2.39 -0.02 0.64 16 39 H 0.09 0.67 7.99 -2.39 -0.02 0.65 16 40 H 0.42 7.06 8.10 -92.71 -0.75 6.31 16 41 H 0.42 10.37 7.94 -92.71 -0.74 9.64 16 42 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 44 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 45 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 46 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 47 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 48 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -69.46 400.20 1.49 -67.97 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: -0.50 Total: 20.34 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: 6.28 Total: -0.33 kcal Atomic # 7 Polarization: -95.72 SS G_CDS: -6.21 Total: -101.93 kcal Atomic # 8 Polarization: -31.52 SS G_CDS: -0.11 Total: -31.63 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -69.46 1.49 -67.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343326583.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.334 kcal (2) G-P(sol) polarization free energy of solvation -69.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds