Wall clock time and date at job start Tue Mar 31 2020 18:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.45205 * 109.47332 * 2 1 4 4 C 1.34756 * 117.00007 * 180.02562 * 3 2 1 5 5 O 1.21517 * 120.00503 * 0.02562 * 4 3 2 6 6 C 1.47305 * 119.99905 * 179.97438 * 4 3 2 7 7 C 1.39822 * 120.99920 * 5.42829 * 6 4 3 8 8 N 1.32188 * 118.99164 * 179.97438 * 7 6 4 9 9 C 1.31972 * 121.20314 * 0.02562 * 8 7 6 10 10 C 1.50702 * 118.88011 * 179.97438 * 9 8 7 11 11 C 1.52997 * 109.47196 * 89.99806 * 10 9 8 12 12 N 1.31672 * 122.24353 * 359.97438 * 9 8 7 13 13 C 1.32986 * 120.84605 * 359.97438 * 12 9 8 14 14 N 1.37844 * 120.63831 * 179.97438 * 13 12 9 15 15 C 1.46840 * 111.00436 * 37.00047 * 14 13 12 16 16 C 1.53031 * 109.52433 * 174.15968 * 15 14 13 17 17 C 1.53121 * 109.28147 * 59.18066 * 16 15 14 18 18 C 1.53118 * 109.15757 * 302.34727 * 17 16 15 19 19 H 1.09001 * 109.50590 * 297.71059 * 18 17 16 20 20 C 1.50703 * 109.50471 * 177.63335 * 18 17 16 21 21 H 1.07997 * 120.00120 * 240.00215 * 20 18 17 22 22 C 1.37876 * 119.99929 * 59.99724 * 20 18 17 23 23 N 1.31511 * 120.00020 * 0.02562 * 22 20 18 24 24 Si 1.86801 * 119.99976 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47307 * 59.99499 * 24 22 20 26 26 H 1.48502 * 109.47304 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.46957 * 300.00178 * 24 22 20 28 28 C 1.46851 * 110.99575 * 272.78761 * 14 13 12 29 29 H 1.09000 * 109.47068 * 299.99971 * 1 2 3 30 30 H 1.08998 * 109.47426 * 59.99569 * 1 2 3 31 31 H 1.08999 * 109.47141 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47068 * 240.00029 * 2 1 3 33 33 H 1.09006 * 109.47434 * 120.00039 * 2 1 3 34 34 H 1.08005 * 120.50733 * 359.96032 * 7 6 4 35 35 H 1.08999 * 109.47250 * 209.99832 * 10 9 8 36 36 H 1.09003 * 109.47277 * 329.99695 * 10 9 8 37 37 H 1.09002 * 109.47545 * 300.00155 * 11 10 9 38 38 H 1.09007 * 109.46998 * 60.00279 * 11 10 9 39 39 H 1.08998 * 109.47329 * 180.02562 * 11 10 9 40 40 H 1.09007 * 109.46268 * 294.17494 * 15 14 13 41 41 H 1.08996 * 109.46411 * 54.14297 * 15 14 13 42 42 H 1.09006 * 109.50799 * 179.12049 * 16 15 14 43 43 H 1.09001 * 109.50786 * 299.23618 * 16 15 14 44 44 H 1.09001 * 109.52065 * 62.24666 * 17 16 15 45 45 H 1.08996 * 109.52757 * 182.44147 * 17 16 15 46 46 H 0.97002 * 119.99875 * 179.97438 * 23 22 20 47 47 H 1.08999 * 109.46375 * 305.85777 * 28 14 13 48 48 H 1.09001 * 109.46323 * 65.83013 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3499 1.5455 -0.0005 5 8 4.0902 0.5819 -0.0015 6 6 3.9130 2.9067 -0.0011 7 6 3.0858 4.0282 0.1122 8 7 3.6334 5.2313 0.1078 9 6 4.9392 5.3878 -0.0017 10 6 5.5076 6.7835 -0.0015 11 6 5.8265 7.2041 1.4345 12 7 5.7624 4.3660 -0.1111 13 6 5.3033 3.1179 -0.1151 14 7 6.1689 2.0514 -0.2304 15 6 7.4190 2.3071 0.4964 16 6 8.2926 1.0510 0.4691 17 6 8.5933 0.6757 -0.9847 18 6 7.2739 0.4621 -1.7317 19 1 6.7303 -0.3679 -1.2803 20 6 7.5594 0.1492 -3.1780 21 1 7.1748 0.7924 -3.9557 22 6 8.3117 -0.9580 -3.5083 23 7 8.7797 -1.7413 -2.5612 24 14 8.6663 -1.3454 -5.3009 25 1 9.4052 -0.2133 -5.9153 26 1 9.4884 -2.5790 -5.3876 27 1 7.3864 -1.5521 -6.0252 28 6 6.4297 1.7354 -1.6406 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.0156 3.9134 0.2018 35 1 6.4201 6.8043 -0.5974 36 1 4.7790 7.4726 -0.4287 37 1 4.9140 7.1834 2.0304 38 1 6.5552 6.5150 1.8616 39 1 6.2372 8.2138 1.4347 40 1 7.9526 3.1310 0.0225 41 1 7.1913 2.5687 1.5297 42 1 9.2271 1.2460 0.9952 43 1 7.7653 0.2302 0.9551 44 1 9.1547 1.4802 -1.4598 45 1 9.1792 -0.2430 -1.0101 46 1 9.3086 -2.5205 -2.7936 47 1 5.4834 1.5817 -2.1593 48 1 6.9679 2.5619 -2.1045 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894485825.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:01 Heat of formation + Delta-G solvation = -34.907366 kcal Electronic energy + Delta-G solvation = -29855.143416 eV Core-core repulsion = 25910.320558 eV Total energy + Delta-G solvation = -3944.822858 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.43321 -39.80189 -38.43272 -36.29131 -34.68510 -34.31081 -32.69042 -31.92231 -31.38211 -30.23429 -29.92834 -25.84438 -25.00308 -24.82982 -23.46920 -22.80370 -21.82713 -21.39595 -20.81709 -18.85293 -18.12803 -17.39517 -17.13896 -16.44081 -16.28231 -15.97077 -15.29327 -14.77515 -14.53214 -14.29279 -14.00429 -13.97435 -13.80969 -13.59971 -13.45230 -12.88009 -12.76096 -12.60517 -12.47174 -12.35574 -12.02820 -11.86760 -11.76116 -11.64294 -11.35565 -11.26688 -10.94215 -10.87662 -10.76289 -10.58495 -10.42009 -10.16208 -10.12640 -9.86149 -9.65483 -9.47131 -9.36386 -9.07123 -8.75784 -8.31893 -8.04711 -5.97492 -4.03998 0.40274 1.03461 2.66059 2.74762 3.32420 3.37006 3.39216 3.62948 3.72716 3.83464 4.15160 4.44628 4.69024 4.88566 4.90889 4.93466 4.98631 5.02851 5.11147 5.19390 5.28429 5.32679 5.50837 5.60469 5.68275 5.68623 5.71706 5.76159 5.84790 5.86717 5.97855 6.00591 6.12841 6.19808 6.31004 6.41873 6.52641 6.63470 6.68654 6.81700 6.91454 7.12964 7.33600 7.41673 7.64453 7.75376 7.98507 8.07093 8.09083 8.16003 8.43908 8.98635 9.59794 11.08551 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.008921 B = 0.004412 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3137.767270 B = 6344.124957 C = 8355.700201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.065 3.935 3 O -0.366 6.366 4 C 0.506 3.494 5 O -0.445 6.445 6 C -0.231 4.231 7 C 0.211 3.789 8 N -0.543 5.543 9 C 0.359 3.641 10 C -0.059 4.059 11 C -0.142 4.142 12 N -0.552 5.552 13 C 0.422 3.578 14 N -0.469 5.469 15 C 0.068 3.932 16 C -0.117 4.117 17 C -0.111 4.111 18 C 0.059 3.941 19 H 0.043 0.957 20 C -0.516 4.516 21 H 0.052 0.948 22 C 0.066 3.934 23 N -0.886 5.886 24 Si 0.891 3.109 25 H -0.278 1.278 26 H -0.287 1.287 27 H -0.278 1.278 28 C 0.087 3.913 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.181 0.819 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.049 0.951 41 H 0.057 0.943 42 H 0.053 0.947 43 H 0.063 0.937 44 H 0.033 0.967 45 H 0.094 0.906 46 H 0.261 0.739 47 H 0.059 0.941 48 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.163 11.893 8.293 18.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.009 4.009 3 O -0.285 6.285 4 C 0.346 3.654 5 O -0.329 6.329 6 C -0.240 4.240 7 C 0.045 3.955 8 N -0.258 5.258 9 C 0.091 3.909 10 C -0.098 4.098 11 C -0.200 4.200 12 N -0.272 5.272 13 C 0.184 3.816 14 N -0.189 5.189 15 C -0.059 4.059 16 C -0.155 4.155 17 C -0.149 4.149 18 C 0.040 3.960 19 H 0.061 0.939 20 C -0.555 4.555 21 H 0.070 0.930 22 C -0.136 4.136 23 N -0.524 5.524 24 Si 0.719 3.281 25 H -0.203 1.203 26 H -0.212 1.212 27 H -0.203 1.203 28 C -0.036 4.036 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.198 0.802 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.082 0.918 44 H 0.051 0.949 45 H 0.113 0.887 46 H 0.071 0.929 47 H 0.077 0.923 48 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -11.614 11.819 8.501 18.624 hybrid contribution 0.158 -0.688 -1.251 1.436 sum -11.456 11.132 7.250 17.542 Atomic orbital electron populations 1.21795 0.92849 1.02868 1.03252 1.22988 0.94889 0.80008 1.03036 1.86470 1.24096 1.32543 1.85360 1.20319 0.80624 0.89156 0.75297 1.91031 1.59408 1.40959 1.41452 1.20590 0.94564 0.93440 1.15384 1.23559 1.00766 0.85923 0.85282 1.68299 1.13604 1.25686 1.18223 1.23332 0.85535 0.95743 0.86290 1.20434 1.01656 0.88221 0.99476 1.21672 1.02024 1.01653 0.94677 1.68721 1.40818 0.99227 1.18387 1.20474 0.90196 0.87857 0.83098 1.59643 1.14372 1.28639 1.16214 1.22068 0.88627 0.98732 0.96426 1.21703 0.97127 0.96144 1.00534 1.21685 1.00650 1.01852 0.90758 1.18676 0.91070 0.90614 0.95608 0.93908 1.21025 1.33050 1.09930 0.91488 0.92966 1.24896 0.95671 0.95932 0.97094 1.69879 1.35644 1.15231 1.31684 0.86677 0.78292 0.77648 0.85472 1.20335 1.21244 1.20337 1.22398 1.00077 1.00454 0.80690 0.91680 0.91555 0.90311 0.90890 0.91182 0.80234 0.88954 0.88975 0.92287 0.92207 0.91361 0.93218 0.92478 0.92882 0.91828 0.94866 0.88744 0.92942 0.92290 0.94742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 10.29 37.15 0.38 -0.84 16 2 C 0.06 0.76 6.20 37.15 0.23 0.99 16 3 O -0.37 -5.03 9.58 -40.64 -0.39 -5.42 16 4 C 0.51 8.55 7.89 34.42 0.27 8.82 16 5 O -0.45 -9.14 14.76 -19.28 -0.28 -9.43 16 6 C -0.23 -3.75 5.92 -104.54 -0.62 -4.37 16 7 C 0.21 2.80 10.89 -16.81 -0.18 2.62 16 8 N -0.54 -7.43 10.30 -10.44 -0.11 -7.54 16 9 C 0.36 5.07 6.89 -157.15 -1.08 3.99 16 10 C -0.06 -0.61 6.36 -27.88 -0.18 -0.79 16 11 C -0.14 -1.27 9.89 37.16 0.37 -0.91 16 12 N -0.55 -9.20 9.28 -9.74 -0.09 -9.29 16 13 C 0.42 7.66 5.58 -154.89 -0.86 6.79 16 14 N -0.47 -9.48 2.85 -172.80 -0.49 -9.97 16 15 C 0.07 1.29 4.94 -3.84 -0.02 1.27 16 16 C -0.12 -2.36 6.09 -26.65 -0.16 -2.52 16 17 C -0.11 -2.66 5.03 -26.61 -0.13 -2.80 16 18 C 0.06 1.52 2.26 -91.69 -0.21 1.31 16 19 H 0.04 1.24 8.14 -51.93 -0.42 0.82 16 20 C -0.52 -14.32 8.57 -34.44 -0.29 -14.61 16 21 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 22 C 0.07 1.83 5.30 -17.82 -0.09 1.73 16 23 N -0.89 -25.35 11.35 55.43 0.63 -24.72 16 24 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 28 C 0.09 1.97 4.32 -3.83 -0.02 1.95 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.18 1.79 7.72 -52.48 -0.40 1.39 16 35 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.05 0.94 7.82 -51.93 -0.41 0.54 16 41 H 0.06 1.00 8.10 -51.93 -0.42 0.58 16 42 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 44 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.09 2.50 6.15 -51.93 -0.32 2.19 16 46 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 47 H 0.06 1.36 8.10 -51.93 -0.42 0.94 16 48 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 391.47 15.07 5.90 5.90 Total: -1.00 -31.13 391.47 -10.31 -41.44 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -7.85 Total: 0.02 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: -2.60 Total: 2.64 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: -0.06 Total: -51.52 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.67 Total: -14.85 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.13 -10.31 -41.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894485825.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.535 kcal (2) G-P(sol) polarization free energy of solvation -31.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds