Wall clock time and date at job start Tue Mar 31 2020 18:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.45205 * 109.47332 * 2 1 4 4 C 1.34756 * 117.00007 * 180.02562 * 3 2 1 5 5 O 1.21517 * 120.00503 * 0.02562 * 4 3 2 6 6 C 1.47305 * 119.99905 * 179.97438 * 4 3 2 7 7 C 1.39822 * 120.99920 * 5.42829 * 6 4 3 8 8 N 1.32188 * 118.99164 * 179.97438 * 7 6 4 9 9 C 1.31972 * 121.20314 * 0.02562 * 8 7 6 10 10 C 1.50702 * 118.88011 * 179.97438 * 9 8 7 11 11 C 1.52997 * 109.47196 * 89.99806 * 10 9 8 12 12 N 1.31672 * 122.24353 * 359.97438 * 9 8 7 13 13 C 1.32986 * 120.84605 * 359.97438 * 12 9 8 14 14 N 1.37844 * 120.63831 * 179.97438 * 13 12 9 15 15 C 1.46840 * 111.00436 * 37.00047 * 14 13 12 16 16 C 1.53031 * 109.52433 * 174.15968 * 15 14 13 17 17 C 1.53121 * 109.28147 * 59.18066 * 16 15 14 18 18 C 1.53118 * 109.15757 * 302.34727 * 17 16 15 19 19 H 1.09001 * 109.50590 * 297.71059 * 18 17 16 20 20 C 1.50703 * 109.50471 * 177.63335 * 18 17 16 21 21 H 1.07997 * 120.00120 * 240.00215 * 20 18 17 22 22 C 1.37876 * 119.99929 * 59.99724 * 20 18 17 23 23 N 1.31511 * 120.00020 * 0.02562 * 22 20 18 24 24 Si 1.86801 * 119.99976 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47307 * 59.99499 * 24 22 20 26 26 H 1.48502 * 109.47304 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.46957 * 300.00178 * 24 22 20 28 28 C 1.46851 * 110.99575 * 272.78761 * 14 13 12 29 29 H 1.09000 * 109.47068 * 299.99971 * 1 2 3 30 30 H 1.08998 * 109.47426 * 59.99569 * 1 2 3 31 31 H 1.08999 * 109.47141 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47068 * 240.00029 * 2 1 3 33 33 H 1.09006 * 109.47434 * 120.00039 * 2 1 3 34 34 H 1.08005 * 120.50733 * 359.96032 * 7 6 4 35 35 H 1.08999 * 109.47250 * 209.99832 * 10 9 8 36 36 H 1.09003 * 109.47277 * 329.99695 * 10 9 8 37 37 H 1.09002 * 109.47545 * 300.00155 * 11 10 9 38 38 H 1.09007 * 109.46998 * 60.00279 * 11 10 9 39 39 H 1.08998 * 109.47329 * 180.02562 * 11 10 9 40 40 H 1.09007 * 109.46268 * 294.17494 * 15 14 13 41 41 H 1.08996 * 109.46411 * 54.14297 * 15 14 13 42 42 H 1.09006 * 109.50799 * 179.12049 * 16 15 14 43 43 H 1.09001 * 109.50786 * 299.23618 * 16 15 14 44 44 H 1.09001 * 109.52065 * 62.24666 * 17 16 15 45 45 H 1.08996 * 109.52757 * 182.44147 * 17 16 15 46 46 H 0.97002 * 119.99875 * 179.97438 * 23 22 20 47 47 H 1.08999 * 109.46375 * 305.85777 * 28 14 13 48 48 H 1.09001 * 109.46323 * 65.83013 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3499 1.5455 -0.0005 5 8 4.0902 0.5819 -0.0015 6 6 3.9130 2.9067 -0.0011 7 6 3.0858 4.0282 0.1122 8 7 3.6334 5.2313 0.1078 9 6 4.9392 5.3878 -0.0017 10 6 5.5076 6.7835 -0.0015 11 6 5.8265 7.2041 1.4345 12 7 5.7624 4.3660 -0.1111 13 6 5.3033 3.1179 -0.1151 14 7 6.1689 2.0514 -0.2304 15 6 7.4190 2.3071 0.4964 16 6 8.2926 1.0510 0.4691 17 6 8.5933 0.6757 -0.9847 18 6 7.2739 0.4621 -1.7317 19 1 6.7303 -0.3679 -1.2803 20 6 7.5594 0.1492 -3.1780 21 1 7.1748 0.7924 -3.9557 22 6 8.3117 -0.9580 -3.5083 23 7 8.7797 -1.7413 -2.5612 24 14 8.6663 -1.3454 -5.3009 25 1 9.4052 -0.2133 -5.9153 26 1 9.4884 -2.5790 -5.3876 27 1 7.3864 -1.5521 -6.0252 28 6 6.4297 1.7354 -1.6406 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.0156 3.9134 0.2018 35 1 6.4201 6.8043 -0.5974 36 1 4.7790 7.4726 -0.4287 37 1 4.9140 7.1834 2.0304 38 1 6.5552 6.5150 1.8616 39 1 6.2372 8.2138 1.4347 40 1 7.9526 3.1310 0.0225 41 1 7.1913 2.5687 1.5297 42 1 9.2271 1.2460 0.9952 43 1 7.7653 0.2302 0.9551 44 1 9.1547 1.4802 -1.4598 45 1 9.1792 -0.2430 -1.0101 46 1 9.3086 -2.5205 -2.7936 47 1 5.4834 1.5817 -2.1593 48 1 6.9679 2.5619 -2.1045 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894485825.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:00 Heat of formation + Delta-G solvation = -51.271755 kcal Electronic energy + Delta-G solvation = -29855.853029 eV Core-core repulsion = 25910.320558 eV Total energy + Delta-G solvation = -3945.532471 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.68688 -41.04637 -40.00428 -37.57526 -36.26508 -35.41795 -34.43716 -32.94103 -32.65202 -31.84116 -31.44665 -27.14283 -26.77670 -26.30591 -24.40612 -24.10047 -23.28551 -22.91848 -22.00993 -20.62891 -19.43158 -18.83175 -18.56336 -17.84022 -17.60640 -17.41943 -16.76580 -16.34257 -16.03260 -15.52447 -15.39243 -15.16625 -14.92210 -14.80618 -14.73451 -14.46122 -14.39382 -14.14489 -13.59728 -13.49031 -13.38832 -12.98702 -12.87161 -12.83478 -12.75130 -12.66186 -12.49316 -12.37043 -12.11575 -11.98088 -11.93723 -11.72938 -11.49100 -11.48873 -11.43751 -11.18460 -10.80701 -10.70555 -10.51239 -10.41501 -9.60391 -8.11089 -6.26244 -0.81418 -0.19035 1.39619 1.41350 1.45009 1.49099 1.52650 2.25547 2.44367 2.53179 2.77351 2.98420 3.15912 3.51670 3.58994 3.91418 4.00110 4.04051 4.09161 4.12797 4.18477 4.23301 4.30716 4.34261 4.39510 4.42995 4.53172 4.67229 4.74264 4.78504 4.86734 4.94293 4.96998 4.98913 5.00756 5.07005 5.12722 5.15230 5.24575 5.33494 5.40728 5.42377 5.58031 5.59905 5.79153 5.99134 6.08437 6.10583 6.32833 6.74700 6.83084 6.86738 7.41231 8.93882 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.008921 B = 0.004412 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3137.767270 B = 6344.124957 C = 8355.700201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.056 3.944 3 O -0.353 6.353 4 C 0.510 3.490 5 O -0.493 6.493 6 C -0.247 4.247 7 C 0.231 3.769 8 N -0.536 5.536 9 C 0.356 3.644 10 C -0.058 4.058 11 C -0.136 4.136 12 N -0.566 5.566 13 C 0.402 3.598 14 N -0.481 5.481 15 C 0.076 3.924 16 C -0.108 4.108 17 C -0.102 4.102 18 C 0.062 3.938 19 H -0.002 1.002 20 C -0.541 4.541 21 H 0.049 0.951 22 C 0.019 3.981 23 N -0.912 5.912 24 Si 0.956 3.044 25 H -0.269 1.269 26 H -0.280 1.280 27 H -0.274 1.274 28 C 0.110 3.890 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.097 0.903 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.217 0.783 35 H 0.094 0.906 36 H 0.112 0.888 37 H 0.058 0.942 38 H 0.045 0.955 39 H 0.093 0.907 40 H 0.051 0.949 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.048 0.952 44 H 0.030 0.970 45 H 0.065 0.935 46 H 0.262 0.738 47 H 0.043 0.957 48 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.591 14.235 8.486 21.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.018 4.018 3 O -0.271 6.271 4 C 0.352 3.648 5 O -0.380 6.380 6 C -0.255 4.255 7 C 0.064 3.936 8 N -0.251 5.251 9 C 0.090 3.910 10 C -0.097 4.097 11 C -0.194 4.194 12 N -0.286 5.286 13 C 0.164 3.836 14 N -0.201 5.201 15 C -0.050 4.050 16 C -0.146 4.146 17 C -0.140 4.140 18 C 0.043 3.957 19 H 0.016 0.984 20 C -0.579 4.579 21 H 0.067 0.933 22 C -0.181 4.181 23 N -0.550 5.550 24 Si 0.781 3.219 25 H -0.194 1.194 26 H -0.206 1.206 27 H -0.199 1.199 28 C -0.015 4.015 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.116 0.884 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.234 0.766 35 H 0.113 0.887 36 H 0.131 0.869 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.112 0.888 40 H 0.069 0.931 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.067 0.933 44 H 0.049 0.951 45 H 0.084 0.916 46 H 0.071 0.929 47 H 0.062 0.938 48 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -13.073 14.202 8.709 21.176 hybrid contribution 0.494 -1.359 -1.273 1.927 sum -12.579 12.843 7.435 19.454 Atomic orbital electron populations 1.21803 0.89460 1.04404 1.04085 1.23280 0.97412 0.78883 1.02190 1.86471 1.22222 1.33792 1.84583 1.20532 0.81256 0.89000 0.73971 1.91021 1.60622 1.42414 1.43920 1.20685 0.94226 0.94070 1.16532 1.24102 1.01953 0.84689 0.82876 1.68462 1.13315 1.25462 1.17834 1.24122 0.85675 0.96583 0.84662 1.20635 1.02173 0.86253 1.00658 1.21648 1.01727 1.02676 0.93352 1.68706 1.41638 0.99077 1.19141 1.20458 0.90551 0.87991 0.84620 1.59470 1.15143 1.30858 1.14661 1.21999 0.88071 0.97691 0.97289 1.21595 0.98688 0.96406 0.97885 1.21470 0.99103 1.00280 0.93185 1.18511 0.91913 0.90597 0.94671 0.98414 1.21360 1.33507 1.10505 0.92536 0.93278 1.25691 0.95313 0.95649 1.01409 1.70025 1.35896 1.15469 1.33659 0.85647 0.78247 0.77718 0.80249 1.19433 1.20566 1.19882 1.21898 0.98423 0.98542 0.82644 0.90457 0.91026 0.88430 0.92466 0.91528 0.76617 0.88711 0.86929 0.92310 0.93613 0.88829 0.93051 0.90663 0.89973 0.93346 0.95131 0.91637 0.92867 0.93804 0.95290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 10.29 71.98 0.74 -1.27 16 2 C 0.06 1.30 6.20 71.98 0.45 1.75 16 3 O -0.35 -9.47 9.58 -56.67 -0.54 -10.02 16 4 C 0.51 17.51 7.89 70.21 0.55 18.06 16 5 O -0.49 -21.31 14.76 19.78 0.29 -21.02 16 6 C -0.25 -7.89 5.92 -19.81 -0.12 -8.01 16 7 C 0.23 5.59 10.89 85.02 0.93 6.51 16 8 N -0.54 -13.24 10.30 -186.93 -1.93 -15.16 16 9 C 0.36 9.35 6.89 138.73 0.96 10.31 16 10 C -0.06 -1.05 6.36 29.85 0.19 -0.87 16 11 C -0.14 -2.06 9.89 71.98 0.71 -1.35 16 12 N -0.57 -18.35 9.28 -184.73 -1.71 -20.07 16 13 C 0.40 14.59 5.58 133.76 0.75 15.33 16 14 N -0.48 -20.03 2.85 -700.61 -2.00 -22.02 16 15 C 0.08 2.89 4.94 86.33 0.43 3.31 16 16 C -0.11 -4.43 6.09 30.65 0.19 -4.25 16 17 C -0.10 -5.10 5.03 30.67 0.15 -4.94 16 18 C 0.06 3.36 2.26 -11.49 -0.03 3.33 16 19 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 20 C -0.54 -31.20 8.57 25.60 0.22 -30.98 16 21 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 22 C 0.02 1.07 5.30 84.65 0.45 1.52 16 23 N -0.91 -54.01 11.35 21.45 0.24 -53.77 16 24 Si 0.96 44.57 29.54 68.60 2.03 46.59 16 25 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 26 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 27 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 28 C 0.11 5.18 4.32 86.33 0.37 5.55 16 29 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 34 H 0.22 3.52 7.72 -2.91 -0.02 3.50 16 35 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 39 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.05 1.93 7.82 -2.38 -0.02 1.91 16 41 H 0.07 2.59 8.10 -2.39 -0.02 2.57 16 42 H 0.08 2.87 8.14 -2.38 -0.02 2.85 16 43 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.07 3.64 6.15 -2.39 -0.01 3.63 16 46 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 47 H 0.04 2.14 8.10 -2.39 -0.02 2.12 16 48 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -70.94 391.47 4.26 -66.68 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: 0.94 Total: 14.76 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: 6.94 Total: 14.02 kcal Atomic # 7 Polarization: -105.63 SS G_CDS: -5.39 Total: -111.02 kcal Atomic # 8 Polarization: -30.78 SS G_CDS: -0.25 Total: -31.03 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -70.94 4.26 -66.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894485825.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.405 kcal (2) G-P(sol) polarization free energy of solvation -70.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds