Wall clock time and date at job start Tue Mar 31 2020 18:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45202 * 109.46759 * 2 1 4 4 C 1.34756 * 116.99521 * 179.97438 * 3 2 1 5 5 O 1.21522 * 120.00647 * 0.02562 * 4 3 2 6 6 C 1.47307 * 119.99856 * 180.02562 * 4 3 2 7 7 C 1.39832 * 120.99553 * 354.57517 * 6 4 3 8 8 N 1.32194 * 118.98474 * 179.72234 * 7 6 4 9 9 C 1.31979 * 121.20475 * 0.02562 * 8 7 6 10 10 C 1.50701 * 118.87550 * 180.02562 * 9 8 7 11 11 C 1.53000 * 109.47109 * 89.99875 * 10 9 8 12 12 N 1.31668 * 122.24288 * 359.97438 * 9 8 7 13 13 C 1.32980 * 120.85217 * 0.02562 * 12 9 8 14 14 N 1.37840 * 120.64748 * 180.02562 * 13 12 9 15 15 C 1.46852 * 110.99251 * 304.52639 * 14 13 12 16 16 C 1.53040 * 109.51945 * 185.83796 * 15 14 13 17 17 C 1.53116 * 109.28049 * 300.82179 * 16 15 14 18 18 C 1.53117 * 109.16009 * 57.65454 * 17 16 15 19 19 H 1.09001 * 109.50427 * 62.28629 * 18 17 16 20 20 C 1.50706 * 109.50521 * 182.40669 * 18 17 16 21 21 H 1.07998 * 120.00058 * 119.99951 * 20 18 17 22 22 C 1.37878 * 119.99570 * 299.99801 * 20 18 17 23 23 N 1.31512 * 120.00222 * 0.02562 * 22 20 18 24 24 Si 1.86797 * 119.99792 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.47222 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47116 * 119.99976 * 24 22 20 27 27 H 1.48499 * 109.47366 * 240.00338 * 24 22 20 28 28 C 1.46840 * 111.00066 * 68.73461 * 14 13 12 29 29 H 1.08996 * 109.47331 * 299.99913 * 1 2 3 30 30 H 1.09005 * 109.47071 * 59.99771 * 1 2 3 31 31 H 1.08995 * 109.46973 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46792 * 240.00613 * 2 1 3 33 33 H 1.08992 * 109.46823 * 120.00238 * 2 1 3 34 34 H 1.07995 * 120.50658 * 359.70143 * 7 6 4 35 35 H 1.09001 * 109.46627 * 210.00016 * 10 9 8 36 36 H 1.08999 * 109.46821 * 329.99603 * 10 9 8 37 37 H 1.09000 * 109.46968 * 299.99565 * 11 10 9 38 38 H 1.08994 * 109.47060 * 60.00042 * 11 10 9 39 39 H 1.08997 * 109.46796 * 180.02562 * 11 10 9 40 40 H 1.08997 * 109.46586 * 305.85752 * 15 14 13 41 41 H 1.08996 * 109.46109 * 65.83918 * 15 14 13 42 42 H 1.09000 * 109.49990 * 60.76701 * 16 15 14 43 43 H 1.08999 * 109.50078 * 180.88034 * 16 15 14 44 44 H 1.09001 * 109.52251 * 177.56153 * 17 16 15 45 45 H 1.08999 * 109.52261 * 297.75351 * 17 16 15 46 46 H 0.96994 * 120.00018 * 179.97438 * 23 22 20 47 47 H 1.08995 * 109.46351 * 294.17868 * 28 14 13 48 48 H 1.09001 * 109.46445 * 54.14774 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3499 1.5455 0.0005 5 8 4.0903 0.5819 0.0005 6 6 3.9130 2.9068 0.0011 7 6 3.0856 4.0283 -0.1121 8 7 3.6327 5.2317 -0.1016 9 6 4.9381 5.3883 0.0128 10 6 5.5058 6.7843 0.0195 11 6 5.5664 7.3034 1.4575 12 7 5.7613 4.3665 0.1224 13 6 5.3028 3.1183 0.1215 14 7 6.1683 2.0517 0.2370 15 6 7.2031 2.0989 -0.8039 16 6 8.0547 0.8291 -0.7362 17 6 8.7011 0.7271 0.6481 18 6 7.6040 0.7287 1.7163 19 1 6.9652 -0.1444 1.5831 20 6 8.2340 0.6881 3.0847 21 1 8.0520 1.4881 3.7870 22 6 9.0428 -0.3706 3.4401 23 7 9.2648 -1.3446 2.5848 24 14 9.8243 -0.4206 5.1360 25 1 9.4208 0.7855 5.9028 26 1 9.3702 -1.6382 5.8546 27 1 11.3027 -0.4490 4.9992 28 6 6.7654 2.0013 1.5775 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.0160 3.9132 -0.2071 35 1 6.5099 6.7701 -0.4044 36 1 4.8691 7.4382 -0.5764 37 1 4.5622 7.3175 1.8812 38 1 6.2031 6.6494 2.0532 39 1 5.9766 8.3132 1.4622 40 1 6.7301 2.1671 -1.7835 41 1 7.8380 2.9706 -0.6456 42 1 7.4230 -0.0423 -0.9080 43 1 8.8325 0.8715 -1.4987 44 1 9.2738 -0.1979 0.7155 45 1 9.3630 1.5788 0.8047 46 1 9.8340 -2.0891 2.8347 47 1 7.4022 2.8736 1.7245 48 1 5.9745 1.9987 2.3276 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894485826.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:04 Heat of formation + Delta-G solvation = -34.399510 kcal Electronic energy + Delta-G solvation = -29796.332098 eV Core-core repulsion = 25851.531262 eV Total energy + Delta-G solvation = -3944.800836 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.44914 -39.84092 -38.39602 -36.32709 -34.67794 -34.31791 -32.71094 -31.94538 -31.33140 -30.29017 -29.89880 -25.82109 -24.98479 -24.87321 -23.49549 -22.76996 -21.81895 -21.42648 -20.86255 -18.86610 -18.12601 -17.42404 -17.13525 -16.47393 -16.31577 -15.97236 -15.26178 -14.90153 -14.37365 -14.31482 -14.06283 -13.94298 -13.83452 -13.61819 -13.42900 -12.90303 -12.71584 -12.57630 -12.51307 -12.33968 -12.03133 -11.89714 -11.77220 -11.67278 -11.36643 -11.23950 -10.96743 -10.80511 -10.74762 -10.55549 -10.45862 -10.19701 -10.12705 -9.84663 -9.57957 -9.49859 -9.39604 -9.05033 -8.72320 -8.32124 -8.03273 -5.96842 -4.03145 0.35627 0.97736 2.61600 2.71588 3.30563 3.38459 3.42106 3.63595 3.70243 3.80170 4.13050 4.45493 4.64669 4.86915 4.88133 4.90032 4.97802 5.02385 5.12946 5.18207 5.24362 5.33420 5.51093 5.59526 5.65396 5.67816 5.70160 5.76998 5.82908 5.86849 5.99787 6.03484 6.12323 6.21534 6.36055 6.43159 6.49105 6.65540 6.72260 6.85012 6.93549 7.13276 7.35839 7.44926 7.68968 7.77157 7.95239 8.03173 8.09225 8.17163 8.45695 9.00192 9.60859 11.09247 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.008770 B = 0.004325 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3192.102955 B = 6472.822505 C = 8293.377344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.065 3.935 3 O -0.366 6.366 4 C 0.507 3.493 5 O -0.443 6.443 6 C -0.220 4.220 7 C 0.207 3.793 8 N -0.537 5.537 9 C 0.355 3.645 10 C -0.058 4.058 11 C -0.144 4.144 12 N -0.547 5.547 13 C 0.423 3.577 14 N -0.478 5.478 15 C 0.073 3.927 16 C -0.115 4.115 17 C -0.110 4.110 18 C 0.058 3.942 19 H 0.040 0.960 20 C -0.514 4.514 21 H 0.054 0.946 22 C 0.065 3.935 23 N -0.886 5.886 24 Si 0.890 3.110 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.284 1.284 28 C 0.081 3.919 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.182 0.818 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.055 0.945 41 H 0.044 0.956 42 H 0.065 0.935 43 H 0.052 0.948 44 H 0.094 0.906 45 H 0.032 0.968 46 H 0.259 0.741 47 H 0.037 0.963 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.104 10.682 -7.945 19.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.009 4.009 3 O -0.285 6.285 4 C 0.347 3.653 5 O -0.326 6.326 6 C -0.228 4.228 7 C 0.040 3.960 8 N -0.251 5.251 9 C 0.087 3.913 10 C -0.097 4.097 11 C -0.202 4.202 12 N -0.265 5.265 13 C 0.186 3.814 14 N -0.201 5.201 15 C -0.053 4.053 16 C -0.153 4.153 17 C -0.148 4.148 18 C 0.039 3.961 19 H 0.058 0.942 20 C -0.553 4.553 21 H 0.072 0.928 22 C -0.137 4.137 23 N -0.525 5.525 24 Si 0.718 3.282 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.210 1.210 28 C -0.043 4.043 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.199 0.801 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.084 0.916 43 H 0.070 0.930 44 H 0.112 0.888 45 H 0.051 0.949 46 H 0.069 0.931 47 H 0.055 0.945 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.630 10.624 -8.013 19.048 hybrid contribution 0.482 -0.463 1.009 1.211 sum -13.147 10.161 -7.004 18.032 Atomic orbital electron populations 1.21800 0.92826 1.02880 1.03288 1.22985 0.94918 0.80010 1.02985 1.86477 1.24113 1.32542 1.85358 1.20301 0.80577 0.89150 0.75312 1.91016 1.59421 1.40927 1.41251 1.20733 0.94656 0.93430 1.13967 1.23606 1.00828 0.85939 0.85666 1.68307 1.13679 1.25713 1.17424 1.23374 0.85509 0.95837 0.86539 1.20442 1.01792 0.87952 0.99545 1.21684 1.02543 1.01330 0.94646 1.68778 1.41010 0.99697 1.17047 1.20542 0.90605 0.87744 0.82492 1.60095 1.20134 1.32723 1.07198 1.22044 0.91752 0.99392 0.92158 1.21680 0.97602 0.96189 0.99851 1.21665 0.99211 1.02622 0.91329 1.18677 0.92063 0.91176 0.94135 0.94192 1.21122 1.29173 1.06425 0.98583 0.92819 1.24908 0.96370 0.95445 0.96960 1.69900 1.38078 1.10032 1.34474 0.86565 0.79059 0.77916 0.84617 1.19878 1.21040 1.21028 1.22407 0.96808 1.01425 0.83699 0.91543 0.91652 0.90305 0.91180 0.90937 0.80148 0.88980 0.89009 0.92254 0.92010 0.91332 0.92688 0.93733 0.91630 0.92976 0.88794 0.94887 0.93073 0.94457 0.92603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 10.29 37.16 0.38 -0.77 16 2 C 0.06 0.72 6.20 37.16 0.23 0.95 16 3 O -0.37 -4.85 9.58 -40.64 -0.39 -5.24 16 4 C 0.51 8.34 7.89 34.42 0.27 8.61 16 5 O -0.44 -8.87 15.01 -19.28 -0.29 -9.16 16 6 C -0.22 -3.51 5.92 -104.53 -0.62 -4.13 16 7 C 0.21 2.68 10.89 -16.80 -0.18 2.50 16 8 N -0.54 -7.27 10.30 -10.43 -0.11 -7.37 16 9 C 0.35 5.03 6.89 -157.14 -1.08 3.94 16 10 C -0.06 -0.61 6.36 -27.88 -0.18 -0.79 16 11 C -0.14 -1.41 9.89 37.16 0.37 -1.04 16 12 N -0.55 -9.19 9.76 -9.74 -0.10 -9.29 16 13 C 0.42 7.66 5.31 -154.90 -0.82 6.83 16 14 N -0.48 -9.69 2.75 -172.80 -0.48 -10.17 16 15 C 0.07 1.39 5.19 -3.83 -0.02 1.37 16 16 C -0.12 -2.34 6.09 -26.65 -0.16 -2.50 16 17 C -0.11 -2.65 5.02 -26.61 -0.13 -2.78 16 18 C 0.06 1.50 2.26 -91.69 -0.21 1.29 16 19 H 0.04 1.16 8.14 -51.93 -0.42 0.74 16 20 C -0.51 -14.30 8.56 -34.44 -0.29 -14.59 16 21 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 22 C 0.06 1.80 5.30 -17.82 -0.09 1.71 16 23 N -0.89 -25.44 11.35 55.43 0.63 -24.81 16 24 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 25 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 26 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 27 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 28 C 0.08 1.83 4.56 -3.84 -0.02 1.81 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.18 1.74 7.72 -52.49 -0.41 1.33 16 35 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.05 0.97 8.10 -51.93 -0.42 0.55 16 41 H 0.04 0.85 7.95 -51.93 -0.41 0.44 16 42 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 43 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.09 2.50 6.15 -51.93 -0.32 2.18 16 45 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 46 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 47 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.06 1.29 8.10 -51.93 -0.42 0.87 16 LS Contribution 392.45 15.07 5.91 5.91 Total: -1.00 -31.34 392.45 -10.26 -41.60 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -7.86 Total: -0.29 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: -2.56 Total: 2.41 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: -0.05 Total: -51.64 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: -0.68 Total: -14.40 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.34 -10.26 -41.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894485826.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.199 kcal (2) G-P(sol) polarization free energy of solvation -31.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds