Wall clock time and date at job start Tue Mar 31 2020 18:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45202 * 109.46759 * 2 1 4 4 C 1.34756 * 116.99521 * 179.97438 * 3 2 1 5 5 O 1.21522 * 120.00647 * 0.02562 * 4 3 2 6 6 C 1.47307 * 119.99856 * 180.02562 * 4 3 2 7 7 C 1.39832 * 120.99553 * 354.57517 * 6 4 3 8 8 N 1.32194 * 118.98474 * 179.72234 * 7 6 4 9 9 C 1.31979 * 121.20475 * 0.02562 * 8 7 6 10 10 C 1.50701 * 118.87550 * 180.02562 * 9 8 7 11 11 C 1.53000 * 109.47109 * 89.99875 * 10 9 8 12 12 N 1.31668 * 122.24288 * 359.97438 * 9 8 7 13 13 C 1.32980 * 120.85217 * 0.02562 * 12 9 8 14 14 N 1.37840 * 120.64748 * 180.02562 * 13 12 9 15 15 C 1.46852 * 110.99251 * 304.52639 * 14 13 12 16 16 C 1.53040 * 109.51945 * 185.83796 * 15 14 13 17 17 C 1.53116 * 109.28049 * 300.82179 * 16 15 14 18 18 C 1.53117 * 109.16009 * 57.65454 * 17 16 15 19 19 H 1.09001 * 109.50427 * 62.28629 * 18 17 16 20 20 C 1.50706 * 109.50521 * 182.40669 * 18 17 16 21 21 H 1.07998 * 120.00058 * 119.99951 * 20 18 17 22 22 C 1.37878 * 119.99570 * 299.99801 * 20 18 17 23 23 N 1.31512 * 120.00222 * 0.02562 * 22 20 18 24 24 Si 1.86797 * 119.99792 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.47222 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47116 * 119.99976 * 24 22 20 27 27 H 1.48499 * 109.47366 * 240.00338 * 24 22 20 28 28 C 1.46840 * 111.00066 * 68.73461 * 14 13 12 29 29 H 1.08996 * 109.47331 * 299.99913 * 1 2 3 30 30 H 1.09005 * 109.47071 * 59.99771 * 1 2 3 31 31 H 1.08995 * 109.46973 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46792 * 240.00613 * 2 1 3 33 33 H 1.08992 * 109.46823 * 120.00238 * 2 1 3 34 34 H 1.07995 * 120.50658 * 359.70143 * 7 6 4 35 35 H 1.09001 * 109.46627 * 210.00016 * 10 9 8 36 36 H 1.08999 * 109.46821 * 329.99603 * 10 9 8 37 37 H 1.09000 * 109.46968 * 299.99565 * 11 10 9 38 38 H 1.08994 * 109.47060 * 60.00042 * 11 10 9 39 39 H 1.08997 * 109.46796 * 180.02562 * 11 10 9 40 40 H 1.08997 * 109.46586 * 305.85752 * 15 14 13 41 41 H 1.08996 * 109.46109 * 65.83918 * 15 14 13 42 42 H 1.09000 * 109.49990 * 60.76701 * 16 15 14 43 43 H 1.08999 * 109.50078 * 180.88034 * 16 15 14 44 44 H 1.09001 * 109.52251 * 177.56153 * 17 16 15 45 45 H 1.08999 * 109.52261 * 297.75351 * 17 16 15 46 46 H 0.96994 * 120.00018 * 179.97438 * 23 22 20 47 47 H 1.08995 * 109.46351 * 294.17868 * 28 14 13 48 48 H 1.09001 * 109.46445 * 54.14774 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3499 1.5455 0.0005 5 8 4.0903 0.5819 0.0005 6 6 3.9130 2.9068 0.0011 7 6 3.0856 4.0283 -0.1121 8 7 3.6327 5.2317 -0.1016 9 6 4.9381 5.3883 0.0128 10 6 5.5058 6.7843 0.0195 11 6 5.5664 7.3034 1.4575 12 7 5.7613 4.3665 0.1224 13 6 5.3028 3.1183 0.1215 14 7 6.1683 2.0517 0.2370 15 6 7.2031 2.0989 -0.8039 16 6 8.0547 0.8291 -0.7362 17 6 8.7011 0.7271 0.6481 18 6 7.6040 0.7287 1.7163 19 1 6.9652 -0.1444 1.5831 20 6 8.2340 0.6881 3.0847 21 1 8.0520 1.4881 3.7870 22 6 9.0428 -0.3706 3.4401 23 7 9.2648 -1.3446 2.5848 24 14 9.8243 -0.4206 5.1360 25 1 9.4208 0.7855 5.9028 26 1 9.3702 -1.6382 5.8546 27 1 11.3027 -0.4490 4.9992 28 6 6.7654 2.0013 1.5775 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.0160 3.9132 -0.2071 35 1 6.5099 6.7701 -0.4044 36 1 4.8691 7.4382 -0.5764 37 1 4.5622 7.3175 1.8812 38 1 6.2031 6.6494 2.0532 39 1 5.9766 8.3132 1.4622 40 1 6.7301 2.1671 -1.7835 41 1 7.8380 2.9706 -0.6456 42 1 7.4230 -0.0423 -0.9080 43 1 8.8325 0.8715 -1.4987 44 1 9.2738 -0.1979 0.7155 45 1 9.3630 1.5788 0.8047 46 1 9.8340 -2.0891 2.8347 47 1 7.4022 2.8736 1.7245 48 1 5.9745 1.9987 2.3276 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894485826.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:03 Heat of formation + Delta-G solvation = -51.041118 kcal Electronic energy + Delta-G solvation = -29797.053732 eV Core-core repulsion = 25851.531262 eV Total energy + Delta-G solvation = -3945.522470 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.68470 -41.05020 -39.97915 -37.57084 -36.25214 -35.43034 -34.46197 -32.91872 -32.62800 -31.85160 -31.47318 -27.06073 -26.85680 -26.31971 -24.39418 -24.06098 -23.32909 -22.92699 -22.03388 -20.62525 -19.42624 -18.82873 -18.58847 -17.83392 -17.58752 -17.43632 -16.69117 -16.47251 -15.94362 -15.58733 -15.39324 -15.08657 -14.94364 -14.82553 -14.68984 -14.46988 -14.40705 -14.17979 -13.58496 -13.52188 -13.36498 -13.00152 -12.89962 -12.83075 -12.75416 -12.62524 -12.49310 -12.37978 -12.06541 -11.99333 -11.94987 -11.69596 -11.54125 -11.47920 -11.43498 -11.16860 -10.81430 -10.62034 -10.53418 -10.42323 -9.62340 -8.11302 -6.26338 -0.84783 -0.22384 1.38753 1.39831 1.44113 1.51650 1.52466 2.28257 2.44955 2.49628 2.75589 2.97013 3.15712 3.50144 3.59140 3.90815 3.98520 4.05175 4.09260 4.13101 4.18278 4.25472 4.30098 4.31820 4.40579 4.45451 4.52004 4.65790 4.74496 4.78814 4.87146 4.94445 4.97818 4.97927 4.98199 5.06350 5.11370 5.15949 5.26995 5.31243 5.41771 5.42954 5.58897 5.67246 5.72837 5.97819 6.09634 6.13996 6.33720 6.74727 6.83545 6.84265 7.41407 8.94051 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.008770 B = 0.004325 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3192.102955 B = 6472.822505 C = 8293.377344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.056 3.944 3 O -0.353 6.353 4 C 0.512 3.488 5 O -0.490 6.490 6 C -0.234 4.234 7 C 0.227 3.773 8 N -0.530 5.530 9 C 0.352 3.648 10 C -0.057 4.057 11 C -0.139 4.139 12 N -0.565 5.565 13 C 0.401 3.599 14 N -0.488 5.488 15 C 0.079 3.921 16 C -0.106 4.106 17 C -0.101 4.101 18 C 0.061 3.939 19 H -0.004 1.004 20 C -0.538 4.538 21 H 0.049 0.951 22 C 0.018 3.982 23 N -0.913 5.913 24 Si 0.957 3.043 25 H -0.269 1.269 26 H -0.280 1.280 27 H -0.276 1.276 28 C 0.103 3.897 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.220 0.780 35 H 0.096 0.904 36 H 0.117 0.883 37 H 0.057 0.943 38 H 0.038 0.962 39 H 0.094 0.906 40 H 0.074 0.926 41 H 0.046 0.954 42 H 0.049 0.951 43 H 0.081 0.919 44 H 0.065 0.935 45 H 0.029 0.971 46 H 0.262 0.738 47 H 0.031 0.969 48 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.620 12.906 -8.412 21.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.018 4.018 3 O -0.271 6.271 4 C 0.354 3.646 5 O -0.377 6.377 6 C -0.242 4.242 7 C 0.060 3.940 8 N -0.244 5.244 9 C 0.086 3.914 10 C -0.096 4.096 11 C -0.197 4.197 12 N -0.284 5.284 13 C 0.164 3.836 14 N -0.211 5.211 15 C -0.047 4.047 16 C -0.144 4.144 17 C -0.139 4.139 18 C 0.042 3.958 19 H 0.014 0.986 20 C -0.577 4.577 21 H 0.067 0.933 22 C -0.181 4.181 23 N -0.552 5.552 24 Si 0.782 3.218 25 H -0.193 1.193 26 H -0.206 1.206 27 H -0.202 1.202 28 C -0.023 4.023 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.116 0.884 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.236 0.764 35 H 0.115 0.885 36 H 0.135 0.865 37 H 0.077 0.923 38 H 0.057 0.943 39 H 0.113 0.887 40 H 0.092 0.908 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.099 0.901 44 H 0.083 0.917 45 H 0.048 0.952 46 H 0.071 0.929 47 H 0.050 0.950 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -15.176 12.880 -8.492 21.640 hybrid contribution 0.841 -1.117 1.129 1.797 sum -14.335 11.762 -7.363 19.951 Atomic orbital electron populations 1.21808 0.89549 1.04399 1.04059 1.23288 0.97354 0.78842 1.02279 1.86477 1.22171 1.33862 1.84563 1.20472 0.81240 0.88909 0.74017 1.91005 1.60632 1.42326 1.43689 1.20802 0.94135 0.94185 1.15028 1.24167 1.02036 0.84653 0.83183 1.68468 1.13272 1.25564 1.17078 1.24120 0.85704 0.96585 0.85006 1.20632 1.02429 0.86136 1.00383 1.21662 1.02160 1.02229 0.93653 1.68740 1.41962 0.99664 1.17984 1.20507 0.90966 0.87802 0.84348 1.59913 1.20358 1.34941 1.05909 1.21987 0.91567 0.98337 0.92799 1.21564 0.98134 0.96463 0.98204 1.21447 0.98402 1.00823 0.93214 1.18527 0.92194 0.90914 0.94202 0.98626 1.21430 1.29857 1.06742 0.99639 0.93254 1.25700 0.96719 0.94951 1.00765 1.70039 1.38421 1.10451 1.36247 0.85528 0.78291 0.78024 0.79936 1.19318 1.20556 1.20155 1.21927 0.95721 0.99282 0.85355 0.91072 0.90497 0.88421 0.91409 0.92347 0.76394 0.88512 0.86517 0.92340 0.94311 0.88682 0.90764 0.93526 0.93257 0.90066 0.91684 0.95171 0.92882 0.95049 0.94081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 10.29 71.98 0.74 -1.12 16 2 C 0.06 1.22 6.20 71.98 0.45 1.67 16 3 O -0.35 -9.02 9.58 -56.67 -0.54 -9.57 16 4 C 0.51 16.95 7.89 70.21 0.55 17.50 16 5 O -0.49 -20.47 15.01 19.77 0.30 -20.17 16 6 C -0.23 -7.31 5.92 -19.81 -0.12 -7.43 16 7 C 0.23 5.34 10.89 85.02 0.93 6.26 16 8 N -0.53 -12.92 10.30 -186.93 -1.93 -14.84 16 9 C 0.35 9.31 6.89 138.73 0.96 10.27 16 10 C -0.06 -1.05 6.36 29.85 0.19 -0.86 16 11 C -0.14 -2.42 9.89 71.98 0.71 -1.71 16 12 N -0.56 -18.60 9.76 -184.73 -1.80 -20.41 16 13 C 0.40 14.52 5.31 133.77 0.71 15.23 16 14 N -0.49 -20.38 2.75 -700.61 -1.93 -22.31 16 15 C 0.08 3.03 5.19 86.33 0.45 3.48 16 16 C -0.11 -4.39 6.09 30.65 0.19 -4.20 16 17 C -0.10 -5.05 5.02 30.67 0.15 -4.89 16 18 C 0.06 3.29 2.26 -11.49 -0.03 3.27 16 19 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 20 C -0.54 -31.15 8.56 25.60 0.22 -30.93 16 21 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 22 C 0.02 1.02 5.30 84.66 0.45 1.47 16 23 N -0.91 -54.18 11.35 21.45 0.24 -53.94 16 24 Si 0.96 44.73 29.54 68.60 2.03 46.75 16 25 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 26 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 27 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 28 C 0.10 4.87 4.56 86.33 0.39 5.26 16 29 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.22 3.35 7.72 -2.91 -0.02 3.33 16 35 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.07 2.56 8.10 -2.39 -0.02 2.54 16 41 H 0.05 1.76 7.95 -2.39 -0.02 1.74 16 42 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 44 H 0.06 3.63 6.15 -2.39 -0.01 3.62 16 45 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 47 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 48 H 0.04 2.01 8.10 -2.39 -0.02 1.99 16 Total: -1.00 -71.44 392.45 4.25 -67.19 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 0.94 Total: 14.02 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: 6.94 Total: 13.27 kcal Atomic # 7 Polarization: -106.08 SS G_CDS: -5.41 Total: -111.50 kcal Atomic # 8 Polarization: -29.49 SS G_CDS: -0.25 Total: -29.74 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -71.44 4.25 -67.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894485826.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.148 kcal (2) G-P(sol) polarization free energy of solvation -71.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds