Wall clock time and date at job start Tue Mar 31 2020 18:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.46908 * 2 1 4 4 C 1.50698 * 109.47078 * 179.97438 * 3 2 1 5 5 C 1.38022 * 119.51019 * 124.99760 * 4 3 2 6 6 C 1.39932 * 119.12942 * 180.02562 * 5 4 3 7 7 C 1.48164 * 120.88924 * 180.02562 * 6 5 4 8 8 O 1.21510 * 120.00288 * 359.97158 * 7 6 5 9 9 N 1.34778 * 119.99770 * 179.97438 * 7 6 5 10 10 C 1.46503 * 119.99663 * 179.97438 * 9 7 6 11 11 C 1.53042 * 109.46189 * 275.02501 * 10 9 7 12 12 C 1.53194 * 109.31099 * 178.60125 * 11 10 9 13 13 N 1.46931 * 108.76323 * 54.65992 * 12 11 10 14 14 C 1.36938 * 120.62799 * 126.40295 * 13 12 11 15 15 H 1.08000 * 120.00136 * 332.60681 * 14 13 12 16 16 C 1.38812 * 119.99423 * 152.60840 * 14 13 12 17 17 N 1.31623 * 119.99436 * 159.34664 * 16 14 13 18 18 Si 1.86796 * 120.00318 * 339.34014 * 16 14 13 19 19 H 1.48505 * 109.46740 * 92.94602 * 18 16 14 20 20 H 1.48498 * 109.47342 * 212.94208 * 18 16 14 21 21 H 1.48493 * 109.47440 * 332.94687 * 18 16 14 22 22 C 1.46919 * 118.73925 * 306.38167 * 13 12 11 23 23 C 1.53043 * 109.45442 * 154.97217 * 10 9 7 24 24 C 1.39607 * 118.21730 * 359.97438 * 6 5 4 25 25 C 1.38853 * 118.94915 * 0.28333 * 24 6 5 26 26 O 1.35689 * 119.62028 * 179.70085 * 25 24 6 27 27 N 1.31878 * 119.51378 * 305.02511 * 4 3 2 28 28 H 1.08992 * 109.47035 * 299.99935 * 1 2 3 29 29 H 1.09002 * 109.46576 * 60.00387 * 1 2 3 30 30 H 1.09001 * 109.46813 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47541 * 239.99915 * 2 1 3 32 32 H 1.09009 * 109.46960 * 119.99539 * 2 1 3 33 33 H 1.08999 * 109.46700 * 59.99749 * 3 2 1 34 34 H 1.08995 * 109.47052 * 299.99596 * 3 2 1 35 35 H 1.08001 * 120.43603 * 0.02562 * 5 4 3 36 36 H 0.97004 * 120.00058 * 0.02562 * 9 7 6 37 37 H 1.08994 * 109.45944 * 35.00684 * 10 9 7 38 38 H 1.09000 * 109.49896 * 298.57180 * 11 10 9 39 39 H 1.09003 * 109.48962 * 58.66682 * 11 10 9 40 40 H 1.08999 * 109.59817 * 294.87330 * 12 11 10 41 41 H 1.08999 * 109.69871 * 174.50566 * 12 11 10 42 42 H 0.97001 * 119.99485 * 179.97438 * 17 16 14 43 43 H 1.09003 * 109.59001 * 293.82229 * 22 13 12 44 44 H 1.08997 * 109.70471 * 173.46717 * 22 13 12 45 45 H 1.08996 * 109.50244 * 301.33505 * 23 10 9 46 46 H 1.09001 * 109.49735 * 61.40616 * 23 10 9 47 47 H 1.08003 * 120.52649 * 180.02562 * 24 6 5 48 48 H 0.96703 * 113.99915 * 89.99427 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4426 0.0006 5 6 4.2272 2.1314 -0.9831 6 6 5.6265 2.1257 -0.9752 7 6 6.3960 2.8523 -2.0121 8 8 5.8124 3.4637 -2.8851 9 7 7.7435 2.8352 -1.9871 10 6 8.5043 3.5532 -3.0126 11 6 8.6615 2.6631 -4.2476 12 6 9.4271 3.4298 -5.3306 13 7 10.6968 3.9058 -4.7646 14 6 11.8859 3.6197 -5.3805 15 1 11.9805 2.7300 -5.9853 16 6 12.9697 4.4734 -5.2273 17 7 14.1900 4.0347 -5.4530 18 14 12.6964 6.2448 -4.7012 19 1 12.8057 6.3447 -3.2236 20 1 13.7222 7.1128 -5.3332 21 1 11.3441 6.6851 -5.1284 22 6 10.6662 4.6947 -3.5256 23 6 9.8863 3.9141 -2.4629 24 6 6.2780 1.4178 0.0364 25 6 5.5171 0.7472 0.9847 26 8 6.1362 0.0499 1.9704 27 7 4.1963 0.7841 0.9408 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 1.6766 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.6867 2.6678 -1.7490 36 1 8.2094 2.3468 -1.2904 37 1 7.9734 4.4647 -3.2870 38 1 9.2142 1.7628 -3.9793 39 1 7.6767 2.3872 -4.6248 40 1 8.8339 4.2812 -5.6644 41 1 9.6278 2.7706 -6.1751 42 1 14.9473 4.6313 -5.3463 43 1 10.1741 5.6493 -3.7122 44 1 11.6837 4.8704 -3.1766 45 1 9.7735 4.5286 -1.5698 46 1 10.4272 3.0019 -2.2110 47 1 7.3569 1.3888 0.0784 48 1 6.3158 0.5691 2.7663 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932216628.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:01 Heat of formation + Delta-G solvation = -54.276084 kcal Electronic energy + Delta-G solvation = -28254.132062 eV Core-core repulsion = 24308.469314 eV Total energy + Delta-G solvation = -3945.662749 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.00883 -40.79368 -39.20671 -38.32667 -36.20406 -35.85878 -34.29036 -33.56933 -32.01696 -31.85527 -31.46201 -27.92139 -27.21686 -25.51548 -24.47717 -23.96603 -23.47042 -22.45149 -21.43351 -21.15186 -19.85722 -18.89127 -18.26706 -18.08263 -17.34503 -16.85787 -16.76521 -16.41400 -16.13581 -15.95089 -15.78866 -15.45306 -15.36343 -15.02478 -14.82239 -14.62841 -14.51082 -14.22571 -13.84118 -13.69959 -13.48934 -13.33755 -12.98846 -12.74099 -12.60934 -12.58548 -12.38694 -12.29806 -12.05243 -12.03983 -11.83452 -11.59367 -11.58764 -11.48274 -11.32326 -11.04005 -10.73231 -10.52315 -10.16641 -9.92068 -8.97635 -8.16272 -5.48945 -0.48472 -0.14957 1.29340 1.43366 1.51706 1.66880 1.88237 2.41356 2.43366 2.63539 3.05343 3.27840 3.33664 3.43814 3.73187 3.82959 3.85289 3.93169 4.07245 4.15731 4.18545 4.21989 4.29238 4.35965 4.46381 4.54029 4.60345 4.66361 4.67880 4.79840 4.82809 4.87058 4.90016 4.94853 4.98350 5.00434 5.04883 5.14633 5.20225 5.33224 5.34123 5.39777 5.42178 5.48604 5.86306 6.12531 6.37343 6.55031 6.80574 6.90206 7.01335 7.60845 8.00879 9.03415 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.024309 B = 0.002238 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.569326 B =12507.129778 C =13004.802203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C -0.069 4.069 4 C 0.151 3.849 5 C -0.131 4.131 6 C -0.074 4.074 7 C 0.559 3.441 8 O -0.562 6.562 9 N -0.701 5.701 10 C 0.160 3.840 11 C -0.130 4.130 12 C 0.147 3.853 13 N -0.619 5.619 14 C -0.249 4.249 15 H 0.052 0.948 16 C -0.034 4.034 17 N -0.955 5.955 18 Si 0.945 3.055 19 H -0.268 1.268 20 H -0.312 1.312 21 H -0.264 1.264 22 C 0.121 3.879 23 C -0.129 4.129 24 C -0.155 4.155 25 C 0.310 3.690 26 O -0.486 6.486 27 N -0.502 5.502 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.154 0.846 36 H 0.413 0.587 37 H 0.076 0.924 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.031 0.969 41 H 0.058 0.942 42 H 0.262 0.738 43 H 0.033 0.967 44 H 0.059 0.941 45 H 0.092 0.908 46 H 0.074 0.926 47 H 0.167 0.833 48 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.849 -5.030 17.867 31.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C -0.107 4.107 4 C 0.013 3.987 5 C -0.152 4.152 6 C -0.085 4.085 7 C 0.345 3.655 8 O -0.441 6.441 9 N -0.352 5.352 10 C 0.055 3.945 11 C -0.170 4.170 12 C 0.021 3.979 13 N -0.343 5.343 14 C -0.378 4.378 15 H 0.070 0.930 16 C -0.229 4.229 17 N -0.601 5.601 18 Si 0.774 3.226 19 H -0.194 1.194 20 H -0.242 1.242 21 H -0.189 1.189 22 C -0.005 4.005 23 C -0.168 4.168 24 C -0.177 4.177 25 C 0.131 3.869 26 O -0.296 6.296 27 N -0.222 5.222 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.114 0.886 34 H 0.118 0.882 35 H 0.172 0.828 36 H 0.251 0.749 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.049 0.951 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.051 0.949 44 H 0.077 0.923 45 H 0.111 0.889 46 H 0.093 0.907 47 H 0.185 0.815 48 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -25.513 -5.474 17.509 31.423 hybrid contribution 1.477 1.209 -0.184 1.917 sum -24.036 -4.266 17.325 29.935 Atomic orbital electron populations 1.21759 0.94195 1.02185 1.02526 1.21403 0.96770 0.95196 1.01864 1.20752 0.85964 0.98980 1.04971 1.21317 0.97825 0.90901 0.88615 1.22265 0.93172 0.99845 0.99888 1.20202 0.94580 0.98346 0.95331 1.18370 0.82543 0.80172 0.84375 1.90778 1.70295 1.44653 1.38400 1.45952 1.05338 1.52837 1.31080 1.20777 0.91480 0.94850 0.87357 1.22220 0.99793 0.98946 0.96018 1.21009 0.85550 0.96420 0.94886 1.44506 1.02440 1.63084 1.24314 1.18847 0.87955 1.03967 1.27041 0.93025 1.25904 0.94848 1.01685 1.00492 1.69968 0.98558 1.36606 1.55014 0.85939 0.77020 0.81758 0.77887 1.19411 1.24151 1.18906 1.21380 0.99017 0.93694 0.86387 1.22181 0.94040 1.01862 0.98724 1.22442 1.02886 0.96971 0.95351 1.19085 0.86644 0.90329 0.90828 1.84779 1.76674 1.39902 1.28281 1.66847 1.10503 1.18455 1.26396 0.91950 0.91944 0.92476 0.92965 0.92173 0.88554 0.88192 0.82814 0.74871 0.90591 0.91811 0.91540 0.95069 0.92317 0.92931 0.94863 0.92291 0.88923 0.90739 0.81510 0.71540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.91 71.98 0.71 -0.68 16 2 C -0.11 -1.46 5.79 30.60 0.18 -1.28 16 3 C -0.07 -0.83 5.61 29.85 0.17 -0.66 16 4 C 0.15 2.61 6.18 42.50 0.26 2.87 16 5 C -0.13 -2.47 9.27 22.63 0.21 -2.26 16 6 C -0.07 -1.47 5.91 -19.90 -0.12 -1.58 16 7 C 0.56 13.78 7.76 86.88 0.67 14.45 16 8 O -0.56 -17.96 16.11 -3.75 -0.06 -18.02 16 9 N -0.70 -15.48 5.03 -444.97 -2.24 -17.72 16 10 C 0.16 4.51 2.42 45.02 0.11 4.62 16 11 C -0.13 -4.11 5.65 30.67 0.17 -3.94 16 12 C 0.15 5.68 6.52 86.36 0.56 6.24 16 13 N -0.62 -28.30 2.77 -699.08 -1.94 -30.24 16 14 C -0.25 -13.87 10.04 84.03 0.84 -13.02 16 15 H 0.05 3.17 8.06 -2.91 -0.02 3.14 16 16 C -0.03 -1.98 5.23 84.86 0.44 -1.54 16 17 N -0.96 -59.23 13.97 21.65 0.30 -58.93 16 18 Si 0.95 45.51 24.35 68.60 1.67 47.18 16 19 H -0.27 -11.87 6.62 99.48 0.66 -11.21 16 20 H -0.31 -15.45 7.11 99.48 0.71 -14.74 16 21 H -0.26 -12.33 6.63 99.48 0.66 -11.67 16 22 C 0.12 4.79 4.20 86.37 0.36 5.15 16 23 C -0.13 -3.76 5.55 30.68 0.17 -3.59 16 24 C -0.15 -2.47 9.55 22.75 0.22 -2.26 16 25 C 0.31 5.38 7.74 84.78 0.66 6.04 16 26 O -0.49 -6.79 13.56 -90.08 -1.22 -8.01 16 27 N -0.50 -9.64 9.87 -297.15 -2.93 -12.57 16 28 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 0.93 7.94 -2.38 -0.02 0.91 16 33 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.10 0.90 7.86 -2.39 -0.02 0.88 16 35 H 0.15 2.77 7.62 -2.91 -0.02 2.74 16 36 H 0.41 6.63 6.74 -92.71 -0.63 6.00 16 37 H 0.08 2.39 7.57 -2.39 -0.02 2.37 16 38 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.06 2.32 7.93 -2.39 -0.02 2.30 16 42 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 43 H 0.03 1.30 7.08 -2.39 -0.02 1.28 16 44 H 0.06 2.57 4.50 -2.39 -0.01 2.56 16 45 H 0.09 2.16 8.14 -2.39 -0.02 2.15 16 46 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 47 H 0.17 1.80 6.53 -2.91 -0.02 1.78 16 48 H 0.42 1.55 9.06 -74.05 -0.67 0.88 16 Total: -1.00 -74.01 383.95 -1.19 -75.20 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -0.40 Total: 14.55 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: 5.63 Total: 8.56 kcal Atomic # 7 Polarization: -112.65 SS G_CDS: -6.81 Total: -119.46 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -1.28 Total: -26.03 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.67 Total: 47.18 kcal Total: -74.01 -1.19 -75.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932216628.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.927 kcal (2) G-P(sol) polarization free energy of solvation -74.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds