Wall clock time and date at job start Tue Mar 31 2020 17:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50705 * 109.46940 * 2 1 4 4 C 1.38357 * 120.26662 * 269.98196 * 3 2 1 5 5 N 1.31884 * 121.18416 * 179.97438 * 4 3 2 6 6 C 1.32242 * 121.79712 * 359.74506 * 5 4 3 7 7 O 1.35432 * 119.79747 * 180.27050 * 6 5 4 8 8 C 1.40275 * 120.40123 * 0.53822 * 6 5 4 9 9 C 1.47523 * 120.59697 * 179.73038 * 8 6 5 10 10 O 1.21593 * 120.00132 * 359.71901 * 9 8 6 11 11 N 1.34775 * 119.99897 * 179.72308 * 9 8 6 12 12 C 1.46505 * 120.00101 * 180.27024 * 11 9 8 13 13 H 1.08996 * 109.46057 * 324.75654 * 12 11 9 14 14 C 1.53047 * 109.45686 * 84.72356 * 12 11 9 15 15 C 1.53192 * 109.30887 * 181.38788 * 14 12 11 16 16 N 1.46928 * 108.77579 * 305.36224 * 15 14 12 17 17 C 1.36936 * 120.63243 * 233.58846 * 16 15 14 18 18 H 1.07995 * 119.99727 * 152.80314 * 17 16 15 19 19 C 1.38811 * 119.99775 * 332.80047 * 17 16 15 20 20 N 1.31622 * 119.99819 * 159.75544 * 19 17 16 21 21 Si 1.86800 * 120.00431 * 339.75556 * 19 17 16 22 22 H 1.48503 * 109.47071 * 94.88962 * 21 19 17 23 23 H 1.48492 * 109.47118 * 214.89098 * 21 19 17 24 24 H 1.48495 * 109.46997 * 334.89582 * 21 19 17 25 25 C 1.46923 * 118.73374 * 53.61575 * 16 15 14 26 26 C 1.53035 * 109.46126 * 204.79226 * 12 11 9 27 27 H 1.09001 * 109.49868 * 298.56703 * 26 12 11 28 28 C 1.53001 * 109.49706 * 58.66884 * 26 12 11 29 29 C 1.38330 * 120.27443 * 89.99830 * 3 2 1 30 30 H 1.08997 * 109.47753 * 60.00096 * 1 2 3 31 31 H 1.08996 * 109.47406 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47157 * 300.00062 * 1 2 3 33 33 H 1.08998 * 109.46837 * 240.00533 * 2 1 3 34 34 H 1.09001 * 109.47172 * 119.99456 * 2 1 3 35 35 H 1.07999 * 119.41422 * 0.02562 * 4 3 2 36 36 H 0.96704 * 113.99489 * 270.26863 * 7 6 5 37 37 H 0.96998 * 120.00156 * 359.97438 * 11 9 8 38 38 H 1.08993 * 109.49784 * 301.34033 * 14 12 11 39 39 H 1.08999 * 109.49254 * 61.43823 * 14 12 11 40 40 H 1.08998 * 109.58617 * 65.15501 * 15 14 12 41 41 H 1.09003 * 109.58026 * 185.57718 * 15 14 12 42 42 H 0.96994 * 120.00302 * 180.02562 * 20 19 17 43 43 H 1.09000 * 109.59424 * 66.17740 * 25 16 15 44 44 H 1.09003 * 109.58596 * 186.59787 * 25 16 15 45 45 H 1.08995 * 109.47624 * 59.99825 * 28 26 12 46 46 H 1.09003 * 109.46845 * 179.97438 * 28 26 12 47 47 H 1.09002 * 109.46626 * 299.99604 * 28 26 12 48 48 H 1.08003 * 120.82039 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2651 2.0782 -1.1950 5 7 2.7041 3.3217 -1.2161 6 6 2.9368 3.9975 -0.1035 7 8 3.3821 5.2746 -0.1724 8 6 2.7305 3.3977 1.1477 9 6 2.9943 4.1456 2.3916 10 8 3.3992 5.2909 2.3382 11 7 2.7867 3.5594 3.5873 12 6 3.0430 4.3041 4.8226 13 1 3.9006 4.9613 4.6791 14 6 1.8124 5.1419 5.1775 15 6 2.0966 5.9456 6.4503 16 7 2.5220 5.0198 7.5090 17 6 1.8894 5.0105 8.7234 18 1 1.8723 4.1080 9.3164 19 6 1.2701 6.1610 9.1922 20 7 0.3456 6.0771 10.1253 21 14 1.7488 7.8282 8.4989 22 1 0.8153 8.1953 7.4038 23 1 1.6773 8.8503 9.5737 24 1 3.1340 7.7642 7.9678 25 6 3.6396 4.1047 7.2400 26 6 3.3381 3.3216 5.9583 27 1 2.4715 2.6804 6.1190 28 6 4.5487 2.4622 5.5884 29 6 2.2647 2.0784 1.1946 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5137 0.8900 35 1 2.0832 1.5643 -2.1273 36 1 4.3456 5.3545 -0.1944 37 1 2.4634 2.6458 3.6299 38 1 1.5889 5.8251 4.3582 39 1 0.9602 4.4835 5.3456 40 1 2.8891 6.6684 6.2567 41 1 1.1919 6.4671 6.7628 42 1 -0.0874 6.8809 10.4527 43 1 4.5580 4.6774 7.1108 44 1 3.7530 3.4116 8.0735 45 1 5.4151 3.1041 5.4292 46 1 4.7588 1.7630 6.3977 47 1 4.3348 1.9075 4.6748 48 1 2.0911 1.5861 2.1401 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000943777895.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:59 Heat of formation + Delta-G solvation = -24.457614 kcal Electronic energy + Delta-G solvation = -29305.087553 eV Core-core repulsion = 25360.717830 eV Total energy + Delta-G solvation = -3944.369723 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.19372 -39.60100 -37.94259 -37.44311 -34.76867 -34.63177 -33.21893 -32.26709 -31.60001 -30.09079 -29.43338 -26.46433 -25.64787 -24.52036 -24.39638 -22.61261 -21.85550 -21.39260 -20.45762 -19.68770 -19.04737 -17.54484 -17.48605 -16.71577 -16.27086 -15.95968 -15.32543 -15.04094 -14.69067 -14.58316 -14.40257 -14.32681 -13.79386 -13.64542 -13.51018 -13.46480 -13.37693 -13.12257 -12.77105 -12.46457 -12.15509 -12.12123 -11.96087 -11.77204 -11.68915 -11.60014 -11.47707 -11.04844 -10.64173 -10.59512 -10.27597 -10.24864 -10.12370 -10.02019 -9.91305 -9.54575 -9.49400 -9.15930 -8.83903 -8.62000 -7.01031 -5.95998 -3.32588 0.26691 0.69674 2.69618 3.04313 3.26493 3.35242 3.50670 3.53273 3.53821 4.11770 4.25814 4.35335 4.39807 4.53259 4.71772 4.85660 4.87990 4.89056 4.95030 5.08916 5.23276 5.23694 5.27824 5.34778 5.41060 5.42090 5.48959 5.67366 5.76116 5.77941 5.80007 5.84253 5.98557 6.02922 6.05425 6.08484 6.21555 6.32070 6.40017 6.55622 6.62131 6.67013 6.69413 6.89928 7.25285 7.47410 7.54310 7.93668 8.19839 8.30872 8.91630 9.70596 10.07518 11.19736 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016318 B = 0.002974 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.444558 B = 9412.867980 C = 9973.145394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.078 4.078 3 C -0.154 4.154 4 C 0.147 3.853 5 N -0.505 5.505 6 C 0.363 3.637 7 O -0.459 6.459 8 C -0.195 4.195 9 C 0.558 3.442 10 O -0.517 6.517 11 N -0.716 5.716 12 C 0.158 3.842 13 H 0.085 0.915 14 C -0.142 4.142 15 C 0.129 3.871 16 N -0.606 5.606 17 C -0.262 4.262 18 H 0.086 0.914 19 C 0.024 3.976 20 N -0.909 5.909 21 Si 0.881 3.119 22 H -0.289 1.289 23 H -0.303 1.303 24 H -0.268 1.268 25 C 0.158 3.842 26 C -0.117 4.117 27 H 0.076 0.924 28 C -0.142 4.142 29 C -0.028 4.028 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.163 0.837 36 H 0.405 0.595 37 H 0.394 0.606 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.029 0.971 41 H 0.074 0.926 42 H 0.263 0.737 43 H 0.025 0.975 44 H 0.068 0.932 45 H 0.053 0.947 46 H 0.057 0.943 47 H 0.047 0.953 48 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.486 -14.664 -21.904 26.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.116 4.116 3 C -0.156 4.156 4 C -0.011 4.011 5 N -0.223 5.223 6 C 0.183 3.817 7 O -0.266 6.266 8 C -0.202 4.202 9 C 0.344 3.656 10 O -0.394 6.394 11 N -0.367 5.367 12 C 0.055 3.945 13 H 0.103 0.897 14 C -0.183 4.183 15 C 0.003 3.997 16 N -0.330 5.330 17 C -0.390 4.390 18 H 0.104 0.896 19 C -0.175 4.175 20 N -0.551 5.551 21 Si 0.712 3.288 22 H -0.216 1.216 23 H -0.231 1.231 24 H -0.193 1.193 25 C 0.032 3.968 26 C -0.137 4.137 27 H 0.094 0.906 28 C -0.200 4.200 29 C -0.055 4.055 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.180 0.820 36 H 0.264 0.736 37 H 0.228 0.772 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.047 0.953 41 H 0.092 0.908 42 H 0.073 0.927 43 H 0.043 0.957 44 H 0.086 0.914 45 H 0.072 0.928 46 H 0.076 0.924 47 H 0.066 0.934 48 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.274 -13.095 -22.530 26.587 hybrid contribution 0.198 0.135 0.416 0.480 sum 5.472 -12.961 -22.114 26.210 Atomic orbital electron populations 1.21794 0.94237 1.02231 1.02548 1.20473 0.96456 0.91045 1.03618 1.20866 1.02426 0.98667 0.93632 1.22643 0.91812 0.88747 0.97858 1.67352 1.14814 1.08709 1.31464 1.19208 0.91827 0.84347 0.86301 1.84742 1.27894 1.18686 1.95284 1.21252 1.08282 0.95583 0.95098 1.17799 0.78591 0.86337 0.82915 1.90831 1.44876 1.16731 1.86939 1.46152 1.67627 1.17225 1.05738 1.21049 0.98756 0.93201 0.81510 0.89673 1.22416 0.97501 0.99419 0.98933 1.21317 0.98722 0.92229 0.87426 1.44399 1.35246 1.41950 1.11362 1.18903 1.28788 0.96756 0.94516 0.89624 1.25263 0.97901 0.97697 0.96615 1.69827 1.24872 1.28702 1.31740 0.86970 0.79584 0.85241 0.77042 1.21624 1.23130 1.19334 1.20913 0.89943 0.92219 0.93771 1.21979 0.98497 0.96939 0.96317 0.90563 1.21767 0.98056 0.99532 1.00620 1.21641 0.92629 0.92243 0.98949 0.92402 0.91895 0.92311 0.90344 0.90423 0.81970 0.73580 0.77179 0.92198 0.91620 0.95323 0.90798 0.92747 0.95661 0.91363 0.92803 0.92421 0.93437 0.84052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.89 37.16 0.37 -0.36 16 2 C -0.08 -0.35 6.08 -27.88 -0.17 -0.52 16 3 C -0.15 -1.10 5.14 -104.54 -0.54 -1.64 16 4 C 0.15 1.20 10.84 -17.49 -0.19 1.01 16 5 N -0.51 -5.76 10.37 -12.98 -0.13 -5.89 16 6 C 0.36 4.54 7.77 -16.61 -0.13 4.42 16 7 O -0.46 -6.02 11.66 -39.76 -0.46 -6.48 16 8 C -0.20 -2.28 5.90 -104.69 -0.62 -2.90 16 9 C 0.56 7.89 7.73 -12.48 -0.10 7.79 16 10 O -0.52 -9.18 14.86 -16.49 -0.24 -9.42 16 11 N -0.72 -9.07 4.32 -54.81 -0.24 -9.31 16 12 C 0.16 2.48 1.88 -67.89 -0.13 2.35 16 13 H 0.09 1.48 7.58 -51.93 -0.39 1.09 16 14 C -0.14 -2.64 5.65 -26.61 -0.15 -2.79 16 15 C 0.13 2.88 4.19 -3.71 -0.02 2.86 16 16 N -0.61 -14.14 2.77 -172.32 -0.48 -14.62 16 17 C -0.26 -7.20 10.04 -15.06 -0.15 -7.35 16 18 H 0.09 2.49 8.05 -52.49 -0.42 2.07 16 19 C 0.02 0.70 5.24 -17.43 -0.09 0.61 16 20 N -0.91 -27.81 13.97 55.49 0.78 -27.04 16 21 Si 0.88 22.71 24.35 -169.99 -4.14 18.57 16 22 H -0.29 -7.28 6.70 56.52 0.38 -6.90 16 23 H -0.30 -7.93 7.11 56.52 0.40 -7.53 16 24 H -0.27 -6.80 6.45 56.52 0.36 -6.43 16 25 C 0.16 2.96 5.80 -3.71 -0.02 2.94 16 26 C -0.12 -1.72 2.46 -90.50 -0.22 -1.95 16 27 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 28 C -0.14 -1.64 9.03 37.16 0.34 -1.30 16 29 C -0.03 -0.24 9.31 -38.89 -0.36 -0.60 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.25 8.09 -51.93 -0.42 -0.17 16 34 H 0.08 0.30 8.09 -51.93 -0.42 -0.12 16 35 H 0.16 0.82 8.06 -52.49 -0.42 0.40 16 36 H 0.40 3.60 9.06 45.56 0.41 4.01 16 37 H 0.39 3.84 6.41 -40.82 -0.26 3.58 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.03 0.65 6.98 -51.93 -0.36 0.29 16 41 H 0.07 1.81 4.50 -51.93 -0.23 1.58 16 42 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 43 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.07 1.26 7.93 -51.93 -0.41 0.85 16 45 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.05 0.46 7.36 -51.93 -0.38 0.08 16 48 H 0.14 0.86 6.52 -52.48 -0.34 0.52 16 LS Contribution 379.73 15.07 5.72 5.72 Total: -1.00 -34.95 379.73 -8.04 -42.99 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -6.66 Total: 2.92 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: -2.18 Total: 2.56 kcal Atomic # 7 Polarization: -56.78 SS G_CDS: -0.07 Total: -56.86 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.71 Total: -15.90 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -4.14 Total: 18.57 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.95 -8.04 -42.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943777895.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.532 kcal (2) G-P(sol) polarization free energy of solvation -34.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds