Wall clock time and date at job start Tue Mar 31 2020 18:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47316 * 2 1 4 4 O 1.34259 * 126.53004 * 269.97688 * 3 2 1 5 5 C 1.34046 * 108.22857 * 180.02562 * 4 3 2 6 6 N 1.29930 * 109.24410 * 0.26799 * 5 4 3 7 7 C 1.36069 * 108.47952 * 359.57465 * 6 5 4 8 8 C 1.47415 * 126.45088 * 180.16468 * 7 6 5 9 9 O 1.21610 * 120.00158 * 186.07371 * 8 7 6 10 10 N 1.34776 * 119.99813 * 6.07713 * 8 7 6 11 11 C 1.43510 * 122.54614 * 186.00747 * 10 8 7 12 12 C 1.52198 * 113.97357 * 122.91011 * 11 10 8 13 13 C 1.51152 * 111.76571 * 82.86679 * 12 11 10 14 14 H 1.08996 * 110.23628 * 33.57009 * 13 12 11 15 15 C 1.53400 * 110.93301 * 156.63958 * 13 12 11 16 16 N 1.46624 * 108.10979 * 102.73870 * 15 13 12 17 17 C 1.36931 * 125.32312 * 178.61666 * 16 15 13 18 18 H 1.08004 * 120.00183 * 347.56400 * 17 16 15 19 19 C 1.38814 * 120.00092 * 167.56589 * 17 16 15 20 20 N 1.31619 * 120.00015 * 341.68097 * 19 17 16 21 21 Si 1.86800 * 119.99964 * 161.67503 * 19 17 16 22 22 H 1.48506 * 109.47005 * 94.98260 * 21 19 17 23 23 H 1.48500 * 109.46927 * 214.98191 * 21 19 17 24 24 H 1.48500 * 109.47093 * 334.98525 * 21 19 17 25 25 C 1.46659 * 109.35265 * 358.64255 * 16 15 13 26 26 C 1.54049 * 106.94408 * 18.30117 * 25 16 15 27 27 H 1.09003 * 111.48349 * 91.53186 * 26 25 16 28 28 C 1.51843 * 109.44891 * 214.13455 * 26 25 16 29 29 C 1.49552 * 122.54664 * 6.29711 * 10 8 7 30 30 H 1.09000 * 109.47169 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46948 * 299.99910 * 1 2 3 32 32 H 1.09000 * 109.47236 * 59.99938 * 1 2 3 33 33 H 1.09000 * 109.47101 * 240.00480 * 2 1 3 34 34 H 1.09000 * 109.47236 * 120.00062 * 2 1 3 35 35 H 1.08006 * 125.37553 * 179.97438 * 5 4 3 36 36 H 1.09002 * 108.52485 * 244.19129 * 11 10 8 37 37 H 1.09004 * 108.52696 * 1.71576 * 11 10 8 38 38 H 1.08999 * 109.13098 * 322.23123 * 12 11 10 39 39 H 1.08994 * 108.91275 * 203.35879 * 12 11 10 40 40 H 1.08994 * 109.74763 * 222.41279 * 15 13 12 41 41 H 1.09005 * 109.74725 * 343.07009 * 15 13 12 42 42 H 0.97000 * 120.00116 * 180.02562 * 20 19 17 43 43 H 1.09001 * 109.96999 * 258.92949 * 25 16 15 44 44 H 1.09001 * 109.96540 * 137.67119 * 25 16 15 45 45 H 1.08996 * 109.00855 * 54.29254 * 28 26 25 46 46 H 1.09005 * 108.94275 * 295.46214 * 28 26 25 47 47 H 1.08992 * 110.26598 * 9.14136 * 29 10 8 48 48 H 1.09000 * 110.26918 * 131.09863 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2992 2.1741 -1.0788 5 6 2.7238 3.3738 -0.6579 6 7 2.7362 3.3921 0.6412 7 6 2.3025 2.1843 1.0937 8 6 2.1584 1.7774 2.5032 9 8 1.8645 0.6298 2.7778 10 7 2.3523 2.6774 3.4876 11 6 2.3504 2.3151 4.8762 12 6 3.6294 2.6852 5.6136 13 6 3.6207 4.1290 6.0609 14 1 2.6076 4.4378 6.3183 15 6 4.5717 4.3414 7.2457 16 7 5.7935 4.9759 6.7414 17 6 6.8665 5.3475 7.5066 18 1 6.7813 5.3667 8.5831 19 6 8.0638 5.6996 6.8988 20 7 8.2990 5.3445 5.6534 21 14 9.3412 6.6774 7.8484 22 1 10.3296 5.7470 8.4507 23 1 10.0373 7.6096 6.9256 24 1 8.6721 7.4528 8.9237 25 6 5.6864 5.1510 5.2892 26 6 4.1920 5.0385 4.9325 27 1 3.7047 6.0135 4.9423 28 6 4.0453 4.3833 3.5705 29 6 2.5794 4.1304 3.2160 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8901 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.0146 4.1940 -1.2977 36 1 1.5105 2.8113 5.3624 37 1 2.2033 1.2378 4.9529 38 1 4.4817 2.5232 4.9538 39 1 3.7312 2.0432 6.4884 40 1 4.0996 4.9876 7.9856 41 1 4.8159 3.3805 7.6988 42 1 9.1358 5.5902 5.2288 43 1 6.2509 4.3714 4.7776 44 1 6.0642 6.1328 5.0038 45 1 4.5787 3.4328 3.5745 46 1 4.4859 5.0343 2.8154 47 1 2.4022 4.3499 2.1632 48 1 1.9268 4.7382 3.8428 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000946529470.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:50 Heat of formation + Delta-G solvation = 22.363415 kcal Electronic energy + Delta-G solvation = -29908.458673 eV Core-core repulsion = 25966.119262 eV Total energy + Delta-G solvation = -3942.339411 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.68178 -40.19801 -38.47839 -35.91357 -35.08007 -34.35664 -32.98149 -32.10046 -30.72641 -29.52462 -27.54753 -27.35189 -25.11697 -24.12505 -23.63208 -22.92383 -22.39948 -21.35744 -20.11647 -19.74043 -18.19867 -17.81976 -17.09623 -16.83932 -16.58277 -15.91248 -15.34292 -15.22318 -14.91741 -14.74622 -14.29965 -13.94733 -13.81562 -13.63986 -13.51727 -13.09805 -12.93081 -12.78598 -12.52892 -12.10622 -12.00332 -11.73124 -11.57900 -11.52395 -11.31458 -11.30803 -11.15136 -10.78003 -10.72228 -10.65313 -10.42077 -10.09262 -9.94767 -9.80881 -9.70146 -9.53665 -9.44450 -9.18392 -8.54785 -8.41775 -6.70670 -5.71621 -3.02069 0.90617 1.85306 2.32389 3.00495 3.21645 3.41808 3.48377 3.51148 3.81435 4.31849 4.46649 4.55072 4.77010 4.89643 5.00705 5.07967 5.14653 5.23716 5.26917 5.40662 5.45703 5.50560 5.52639 5.55983 5.56761 5.67114 5.74834 5.83346 5.84669 5.88648 6.01051 6.03834 6.16682 6.23779 6.26745 6.50961 6.52292 6.59970 6.68445 6.72892 6.78114 6.86409 7.12690 7.22783 7.45621 7.49979 7.70834 7.82698 8.13611 8.32360 9.24377 9.88648 10.56483 11.40576 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020990 B = 0.002886 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.633630 B = 9698.226258 C =10426.134008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.048 4.048 3 C 0.042 3.958 4 O -0.200 6.200 5 C 0.173 3.827 6 N -0.454 5.454 7 C -0.066 4.066 8 C 0.606 3.394 9 O -0.542 6.542 10 N -0.589 5.589 11 C 0.111 3.889 12 C -0.125 4.125 13 C -0.091 4.091 14 H 0.066 0.934 15 C 0.141 3.859 16 N -0.598 5.598 17 C -0.233 4.233 18 H 0.074 0.926 19 C -0.005 4.005 20 N -0.909 5.909 21 Si 0.903 3.097 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.181 3.819 26 C -0.108 4.108 27 H 0.066 0.934 28 C -0.118 4.118 29 C 0.091 3.909 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.084 0.916 34 H 0.119 0.881 35 H 0.255 0.745 36 H 0.060 0.940 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.020 0.980 41 H 0.021 0.979 42 H 0.252 0.748 43 H 0.037 0.963 44 H 0.040 0.960 45 H 0.072 0.928 46 H 0.066 0.934 47 H 0.124 0.876 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.899 -6.448 -14.508 23.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.085 4.085 3 C -0.014 4.014 4 O -0.086 6.086 5 C -0.055 4.055 6 N -0.183 5.183 7 C -0.186 4.186 8 C 0.394 3.606 9 O -0.421 6.421 10 N -0.320 5.320 11 C -0.012 4.012 12 C -0.163 4.163 13 C -0.110 4.110 14 H 0.084 0.916 15 C 0.015 3.985 16 N -0.324 5.324 17 C -0.362 4.362 18 H 0.092 0.908 19 C -0.202 4.202 20 N -0.555 5.555 21 Si 0.733 3.267 22 H -0.217 1.217 23 H -0.216 1.216 24 H -0.206 1.206 25 C 0.056 3.944 26 C -0.128 4.128 27 H 0.084 0.916 28 C -0.156 4.156 29 C -0.030 4.030 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.103 0.897 34 H 0.137 0.863 35 H 0.270 0.730 36 H 0.078 0.922 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.038 0.962 41 H 0.039 0.961 42 H 0.062 0.938 43 H 0.055 0.945 44 H 0.058 0.942 45 H 0.090 0.910 46 H 0.085 0.915 47 H 0.141 0.859 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -16.658 -6.509 -14.039 22.737 hybrid contribution 0.866 0.402 0.046 0.956 sum -15.792 -6.107 -13.992 21.965 Atomic orbital electron populations 1.21704 0.93163 1.02871 1.02355 1.20408 0.96986 0.85522 1.05617 1.23769 0.98805 0.95517 0.83325 1.84371 1.63704 1.24221 1.36297 1.28185 0.98780 0.86989 0.91557 1.70738 1.17180 1.20879 1.09494 1.21430 1.10158 0.91567 0.95426 1.16585 0.77088 0.84378 0.82508 1.90750 1.49713 1.18694 1.82962 1.47742 1.68965 1.09327 1.05932 1.20782 0.98196 1.01755 0.80508 1.21544 0.97657 0.96786 1.00284 1.21786 0.98457 0.94361 0.96346 0.91607 1.21134 0.87951 0.95551 0.93838 1.44187 1.14703 1.69777 1.03685 1.18953 0.88788 1.38476 0.89982 0.90810 1.24789 0.96932 1.01810 0.96689 1.70044 1.24593 1.47970 1.12866 0.86248 0.81427 0.80126 0.78877 1.21682 1.21629 1.20602 1.20990 0.88679 1.00004 0.84742 1.22387 0.99823 0.97463 0.93092 0.91603 1.21748 0.95234 1.01738 0.96930 1.23050 0.97010 0.78362 1.04611 0.91055 0.91895 0.92638 0.89740 0.86277 0.72954 0.92162 0.90022 0.90534 0.91011 0.96247 0.96075 0.93846 0.94472 0.94153 0.91001 0.91548 0.85904 0.91148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.89 37.16 0.37 -0.75 16 2 C -0.05 -0.43 5.99 -27.89 -0.17 -0.60 16 3 C 0.04 0.47 6.69 -35.08 -0.23 0.23 16 4 O -0.20 -1.91 10.73 6.52 0.07 -1.84 16 5 C 0.17 1.45 13.19 51.96 0.69 2.14 16 6 N -0.45 -5.36 7.94 -11.48 -0.09 -5.46 16 7 C -0.07 -0.87 6.73 -83.02 -0.56 -1.43 16 8 C 0.61 9.06 7.73 -12.52 -0.10 8.96 16 9 O -0.54 -8.80 14.30 5.27 0.08 -8.72 16 10 N -0.59 -8.49 2.61 -175.29 -0.46 -8.95 16 11 C 0.11 1.57 5.76 -6.03 -0.03 1.53 16 12 C -0.12 -1.99 4.79 -28.07 -0.13 -2.13 16 13 C -0.09 -1.56 2.79 -89.86 -0.25 -1.81 16 14 H 0.07 1.00 7.67 -51.93 -0.40 0.60 16 15 C 0.14 3.00 6.82 -3.77 -0.03 2.97 16 16 N -0.60 -15.54 3.37 -172.12 -0.58 -16.12 16 17 C -0.23 -6.66 10.14 -15.06 -0.15 -6.81 16 18 H 0.07 2.05 7.89 -52.48 -0.41 1.63 16 19 C 0.00 -0.14 5.28 -17.43 -0.09 -0.23 16 20 N -0.91 -27.14 11.12 55.49 0.62 -26.52 16 21 Si 0.90 22.33 29.59 -169.99 -5.03 17.30 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 C 0.18 4.38 4.86 -3.41 -0.02 4.36 16 26 C -0.11 -1.97 2.94 -89.17 -0.26 -2.24 16 27 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 28 C -0.12 -1.89 4.50 -27.36 -0.12 -2.02 16 29 C 0.09 1.23 5.80 -2.39 -0.01 1.22 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.12 1.26 6.38 -51.93 -0.33 0.92 16 35 H 0.25 0.82 8.06 -52.48 -0.42 0.40 16 36 H 0.06 0.77 7.68 -51.93 -0.40 0.37 16 37 H 0.08 1.18 7.01 -51.93 -0.36 0.82 16 38 H 0.08 1.42 5.87 -51.93 -0.30 1.12 16 39 H 0.07 1.11 7.53 -51.93 -0.39 0.72 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.02 0.46 7.40 -51.93 -0.38 0.08 16 42 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 43 H 0.04 1.01 7.22 -51.93 -0.37 0.63 16 44 H 0.04 1.08 7.68 -51.93 -0.40 0.68 16 45 H 0.07 1.31 5.47 -51.93 -0.28 1.02 16 46 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 47 H 0.12 1.60 4.57 -51.93 -0.24 1.36 16 48 H 0.07 0.89 7.82 -51.93 -0.41 0.49 16 LS Contribution 368.44 15.07 5.55 5.55 Total: -1.00 -33.67 368.44 -8.16 -41.83 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -7.21 Total: -0.48 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -1.11 Total: 3.41 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: -0.51 Total: -57.05 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.15 Total: -10.56 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.03 Total: 17.30 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.67 -8.16 -41.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946529470.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.195 kcal (2) G-P(sol) polarization free energy of solvation -33.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds