Wall clock time and date at job start Tue Mar 31 2020 18:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.46775 * 2 1 4 4 N 1.29937 * 125.37480 * 89.99804 * 3 2 1 5 5 C 1.36080 * 108.47522 * 179.97438 * 4 3 2 6 6 C 1.47415 * 126.44557 * 179.97438 * 5 4 3 7 7 O 1.21617 * 119.99564 * 174.23165 * 6 5 4 8 8 N 1.34778 * 120.00530 * 353.95789 * 6 5 4 9 9 C 1.49721 * 122.75344 * 353.95263 * 8 6 5 10 10 C 1.53161 * 105.59768 * 111.59186 * 9 8 6 11 11 C 1.50957 * 111.96188 * 99.83568 * 10 9 8 12 12 H 1.08997 * 109.52495 * 58.24194 * 11 10 9 13 13 C 1.53585 * 111.30794 * 178.50698 * 11 10 9 14 14 N 1.47173 * 105.65249 * 150.28764 * 13 11 10 15 15 C 1.36934 * 126.09953 * 149.76181 * 14 13 11 16 16 H 1.07994 * 120.00412 * 345.97683 * 15 14 13 17 17 C 1.38817 * 120.00027 * 165.97955 * 15 14 13 18 18 N 1.31622 * 119.99824 * 340.78345 * 17 15 14 19 19 Si 1.86796 * 120.00294 * 160.78447 * 17 15 14 20 20 H 1.48498 * 109.46851 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47222 * 119.99803 * 19 17 15 22 22 H 1.48496 * 109.47106 * 240.00137 * 19 17 15 23 23 C 1.46779 * 107.79836 * 329.73725 * 14 13 11 24 24 C 1.53829 * 107.91272 * 20.29752 * 23 14 13 25 25 H 1.09000 * 111.55316 * 118.11063 * 24 23 14 26 26 C 1.51859 * 109.23185 * 241.13256 * 24 23 14 27 27 C 1.43636 * 122.75415 * 173.66430 * 8 6 5 28 28 C 1.36095 * 107.09753 * 0.22813 * 5 4 3 29 29 O 1.34049 * 125.37867 * 269.99741 * 3 2 1 30 30 H 1.09002 * 109.46846 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47570 * 299.99752 * 1 2 3 32 32 H 1.08999 * 109.47401 * 60.00494 * 1 2 3 33 33 H 1.08997 * 109.47466 * 239.99839 * 2 1 3 34 34 H 1.09002 * 109.46761 * 119.99864 * 2 1 3 35 35 H 1.09007 * 110.21373 * 230.61014 * 9 8 6 36 36 H 1.09006 * 110.21698 * 352.42975 * 9 8 6 37 37 H 1.09003 * 108.98435 * 220.47185 * 10 9 8 38 38 H 1.09000 * 108.98380 * 339.27460 * 10 9 8 39 39 H 1.08995 * 110.21102 * 269.32898 * 13 11 10 40 40 H 1.08998 * 110.21537 * 31.24064 * 13 11 10 41 41 H 0.97002 * 119.99929 * 180.02562 * 18 17 15 42 42 H 1.09002 * 109.77971 * 260.67900 * 23 14 13 43 43 H 1.09007 * 109.77923 * 139.90957 * 23 14 13 44 44 H 1.09001 * 108.91659 * 320.64653 * 26 24 23 45 45 H 1.08996 * 108.92133 * 79.29555 * 26 24 23 46 46 H 1.08990 * 108.42895 * 359.35363 * 27 8 6 47 47 H 1.09002 * 108.42342 * 116.61969 * 27 8 6 48 48 H 1.07997 * 126.52068 * 179.77670 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2829 2.1301 1.0595 5 6 2.7174 3.3575 0.6639 6 6 3.1112 4.4726 1.5440 7 8 3.5827 5.4868 1.0663 8 7 2.9437 4.3704 2.8774 9 6 2.2454 3.2122 3.5197 10 6 3.3312 2.4491 4.2842 11 6 3.3213 2.7781 5.7575 12 1 2.3438 2.5407 6.1772 13 6 4.3909 1.9776 6.5152 14 7 4.7890 2.8236 7.6518 15 6 5.2291 2.3821 8.8710 16 1 5.0982 1.3471 9.1500 17 6 5.8435 3.2650 9.7485 18 7 6.3440 4.3968 9.3003 19 14 5.9600 2.8468 11.5653 20 1 5.3252 1.5270 11.8111 21 1 7.3877 2.7930 11.9703 22 1 5.2593 3.8881 12.3589 23 6 4.6306 4.2250 7.2451 24 6 3.6639 4.2643 6.0492 25 1 2.7642 4.8347 6.2801 26 6 4.3819 4.8468 4.8445 27 6 3.4259 5.3607 3.7993 28 6 2.7145 3.3635 -0.6970 29 8 2.2910 2.1526 -1.0930 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.4797 3.5691 4.2086 36 1 1.7978 2.5730 2.7585 37 1 3.1674 1.3788 4.1589 38 1 4.3055 2.7093 3.8705 39 1 3.9734 1.0369 6.8741 40 1 5.2477 1.7879 5.8688 41 1 6.7737 5.0136 9.9134 42 1 5.5969 4.6355 6.9520 43 1 4.2189 4.8047 8.0714 44 1 5.0187 5.6673 5.1753 45 1 5.0063 4.0735 4.3972 46 1 3.9277 6.1444 3.2319 47 1 2.5696 5.8037 4.3080 48 1 3.0004 4.1853 -1.3367 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000946559107.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:32 Heat of formation + Delta-G solvation = 21.943552 kcal Electronic energy + Delta-G solvation = -29578.819469 eV Core-core repulsion = 25636.461852 eV Total energy + Delta-G solvation = -3942.357617 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.74489 -40.22213 -38.48162 -35.88686 -35.32899 -34.32768 -33.00573 -32.17113 -30.71505 -29.82804 -27.73825 -27.23018 -25.06883 -24.66404 -23.85991 -22.73910 -22.22569 -21.33006 -20.25909 -19.70074 -18.18843 -17.91338 -17.19940 -16.90255 -16.72595 -16.03827 -15.41415 -15.09512 -14.91121 -14.75607 -14.53253 -13.97719 -13.92994 -13.61827 -13.44545 -13.17818 -13.12826 -12.76449 -12.55147 -12.30557 -12.22525 -11.73105 -11.67194 -11.56091 -11.46006 -11.41375 -11.04329 -10.87961 -10.76341 -10.60308 -10.45657 -10.19579 -9.93425 -9.76746 -9.71998 -9.54317 -9.46550 -9.31993 -8.55766 -8.49396 -6.75092 -5.73994 -3.04126 0.85689 1.72197 2.25465 2.91640 3.16067 3.41195 3.48221 3.50610 3.51863 4.32613 4.42995 4.53535 4.65774 4.69623 4.86214 5.04529 5.15331 5.26089 5.26182 5.29370 5.31961 5.34169 5.42099 5.46710 5.49814 5.57165 5.61958 5.69359 5.73533 5.90071 6.00858 6.03474 6.11772 6.22783 6.26972 6.40138 6.45693 6.55503 6.67173 6.68953 6.77839 6.89291 7.10067 7.18422 7.43303 7.44683 7.67627 7.80232 8.08059 8.29246 9.20965 9.85307 10.56846 11.39133 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019957 B = 0.002769 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.695114 B =10111.244255 C =11159.216862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.029 4.029 3 C 0.198 3.802 4 N -0.451 5.451 5 C -0.062 4.062 6 C 0.605 3.395 7 O -0.544 6.544 8 N -0.588 5.588 9 C 0.090 3.910 10 C -0.119 4.119 11 C -0.098 4.098 12 H 0.062 0.938 13 C 0.139 3.861 14 N -0.596 5.596 15 C -0.233 4.233 16 H 0.075 0.925 17 C -0.004 4.004 18 N -0.907 5.907 19 Si 0.903 3.097 20 H -0.279 1.279 21 H -0.292 1.292 22 H -0.290 1.290 23 C 0.175 3.825 24 C -0.101 4.101 25 H 0.067 0.933 26 C -0.126 4.126 27 C 0.109 3.891 28 C 0.008 3.992 29 O -0.196 6.196 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.095 0.905 34 H 0.110 0.890 35 H 0.071 0.929 36 H 0.126 0.874 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.039 0.961 40 H 0.013 0.987 41 H 0.252 0.748 42 H 0.038 0.962 43 H 0.041 0.959 44 H 0.075 0.925 45 H 0.070 0.930 46 H 0.080 0.920 47 H 0.061 0.939 48 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.709 -5.961 -21.868 25.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.067 4.067 3 C -0.011 4.011 4 N -0.182 5.182 5 C -0.181 4.181 6 C 0.393 3.607 7 O -0.423 6.423 8 N -0.319 5.319 9 C -0.031 4.031 10 C -0.157 4.157 11 C -0.118 4.118 12 H 0.081 0.919 13 C 0.012 3.988 14 N -0.320 5.320 15 C -0.362 4.362 16 H 0.093 0.907 17 C -0.202 4.202 18 N -0.553 5.553 19 Si 0.733 3.267 20 H -0.204 1.204 21 H -0.219 1.219 22 H -0.217 1.217 23 C 0.050 3.950 24 C -0.121 4.121 25 H 0.085 0.915 26 C -0.164 4.164 27 C -0.014 4.014 28 C -0.065 4.065 29 O -0.082 6.082 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.113 0.887 34 H 0.129 0.871 35 H 0.089 0.911 36 H 0.143 0.857 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.057 0.943 40 H 0.031 0.969 41 H 0.062 0.938 42 H 0.056 0.944 43 H 0.059 0.941 44 H 0.094 0.906 45 H 0.089 0.911 46 H 0.098 0.902 47 H 0.079 0.921 48 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -12.405 -5.548 -21.331 25.292 hybrid contribution 0.373 0.237 0.494 0.663 sum -12.032 -5.311 -20.837 24.641 Atomic orbital electron populations 1.21797 0.92863 1.03224 1.03050 1.20156 0.96990 0.83903 1.05638 1.26549 0.99102 0.96982 0.78453 1.70739 1.15992 1.02726 1.28709 1.21770 1.09297 0.94163 0.92890 1.16619 0.78254 0.84593 0.81279 1.90811 1.46810 1.29839 1.74798 1.47806 1.54899 1.24691 1.04490 1.23119 0.94790 0.87131 0.98059 1.21594 0.99394 0.99805 0.94940 1.21808 0.99893 0.96098 0.93989 0.91939 1.21278 0.94049 0.93829 0.89598 1.44359 1.76521 1.00890 1.10274 1.18997 1.31906 0.95539 0.89738 0.90728 1.24812 0.98960 0.97697 0.98732 1.70054 1.40331 1.11751 1.33150 0.86194 0.77207 0.77597 0.85681 1.20391 1.21891 1.21661 1.21006 0.95157 0.86759 0.92100 1.22182 0.98802 0.94918 0.96163 0.91474 1.21470 0.98179 1.01707 0.95042 1.20507 0.98584 0.90857 0.91467 1.25249 0.99072 0.86580 0.95636 1.84386 1.63484 1.22440 1.37937 0.90702 0.91528 0.92188 0.88696 0.87144 0.91064 0.85704 0.91660 0.91096 0.94277 0.96924 0.93818 0.94384 0.94075 0.90604 0.91129 0.90153 0.92055 0.75388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.89 37.16 0.37 -0.29 16 2 C -0.03 -0.15 6.56 -27.88 -0.18 -0.33 16 3 C 0.20 1.75 7.56 -13.08 -0.10 1.65 16 4 N -0.45 -5.07 7.94 -7.65 -0.06 -5.13 16 5 C -0.06 -0.76 6.74 -83.02 -0.56 -1.32 16 6 C 0.61 8.93 7.74 -12.52 -0.10 8.84 16 7 O -0.54 -9.24 16.43 5.26 0.09 -9.15 16 8 N -0.59 -8.40 2.67 -175.81 -0.47 -8.87 16 9 C 0.09 1.16 5.94 -2.16 -0.01 1.15 16 10 C -0.12 -1.71 4.58 -27.67 -0.13 -1.84 16 11 C -0.10 -1.68 2.61 -90.13 -0.24 -1.92 16 12 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 13 C 0.14 2.93 6.71 -3.37 -0.02 2.91 16 14 N -0.60 -15.43 3.36 -171.61 -0.58 -16.00 16 15 C -0.23 -6.62 10.18 -15.06 -0.15 -6.77 16 16 H 0.07 2.06 7.90 -52.49 -0.41 1.64 16 17 C 0.00 -0.12 5.27 -17.43 -0.09 -0.21 16 18 N -0.91 -27.11 11.34 55.49 0.63 -26.48 16 19 Si 0.90 22.24 29.60 -169.99 -5.03 17.21 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 C 0.18 4.22 5.00 -3.46 -0.02 4.20 16 24 C -0.10 -1.85 3.14 -89.56 -0.28 -2.13 16 25 H 0.07 1.15 7.76 -51.93 -0.40 0.75 16 26 C -0.13 -2.08 4.51 -28.47 -0.13 -2.20 16 27 C 0.11 1.60 5.66 -6.72 -0.04 1.56 16 28 C 0.01 0.08 11.95 29.96 0.36 0.44 16 29 O -0.20 -1.78 10.73 6.51 0.07 -1.71 16 30 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.89 7.85 -51.92 -0.41 0.48 16 36 H 0.13 1.52 4.51 -51.93 -0.23 1.29 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.07 1.14 5.57 -51.93 -0.29 0.86 16 39 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.01 0.28 7.96 -51.93 -0.41 -0.13 16 41 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 42 H 0.04 1.02 6.97 -51.93 -0.36 0.65 16 43 H 0.04 1.09 7.72 -51.93 -0.40 0.69 16 44 H 0.08 1.28 7.66 -51.93 -0.40 0.89 16 45 H 0.07 1.25 5.77 -51.93 -0.30 0.95 16 46 H 0.08 1.23 7.02 -51.93 -0.36 0.86 16 47 H 0.06 0.84 7.70 -51.93 -0.40 0.44 16 48 H 0.23 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 373.32 15.07 5.63 5.63 Total: -1.00 -33.80 373.32 -8.37 -42.18 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -7.33 Total: -1.42 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: -1.32 Total: 3.75 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: -0.48 Total: -56.47 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.16 Total: -10.86 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.03 Total: 17.21 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.80 -8.37 -42.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946559107.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.119 kcal (2) G-P(sol) polarization free energy of solvation -33.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds